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NBDC - LSDB Archive
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BP912145
Clone id YMU001_000015_F04
Library
Length 298
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000015_F04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTGGCGGGGATCAATCAATCATTACTAATCCAGATTCCCATTCGCATCTTCTTCATCTGA
GTCATCGCCTTCCAATGTCCATGCCTTACCACTATTAGGCTGAGCAGCTGAGGTGTCTCC
TCTCTTTTTCATCTCCTCCTCCTCTTTCTTTCTCCGAAGCTCCTGCCACTCCTGAACTCT
CCGGCGCCGTTTCTCGGCCTCTTCCTCCAGCTTCTTCTGCTCCTCTTCAAGGTCCTCCTC
CTGTGGTGGGGCATCTTTCTTAGCTCTTAGTTCTGCTTCCTCCTCTTTGCGTCGCCTC
■■Homology search results ■■ -
sp_hit_id Q8H0U8
Definition sp|Q8H0U8|RH42_ARATH DEAD-box ATP-dependent RNA helicase 42 OS=Arabidopsis thaliana
Align length 48
Score (bit) 57.0
E-value 3.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912145|Adiantum capillus-veneris mRNA, clone:
YMU001_000015_F04.
         (298 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8H0U8|RH42_ARATH DEAD-box ATP-dependent RNA helicase 42 OS=A...    57   3e-08
sp|Q9SF41|RH45_ARATH DEAD-box ATP-dependent RNA helicase 45 OS=A...    48   2e-05
sp|Q84UQ1|RH42_ORYSJ DEAD-box ATP-dependent RNA helicase 42 OS=O...    39   0.011
sp|Q0J7Y8|RH45_ORYSJ DEAD-box ATP-dependent RNA helicase 45 OS=O...    38   0.014
sp|Q62780|DDX46_RAT Probable ATP-dependent RNA helicase DDX46 OS...    32   1.00 
sp|Q5R6D8|DDX46_PONAB Probable ATP-dependent RNA helicase DDX46 ...    32   1.00 
sp|Q569Z5|DDX46_MOUSE Probable ATP-dependent RNA helicase DDX46 ...    32   1.00 
sp|Q7L014|DDX46_HUMAN Probable ATP-dependent RNA helicase DDX46 ...    32   1.00 

>sp|Q8H0U8|RH42_ARATH DEAD-box ATP-dependent RNA helicase 42
           OS=Arabidopsis thaliana GN=RH42 PE=2 SV=2
          Length = 1166

 Score = 57.0 bits (136), Expect = 3e-08
 Identities = 26/48 (54%), Positives = 30/48 (62%)
 Frame = -2

Query: 192 KRRRRVQEWQELXXXXXXXXXXXRGDTSAAQPNSGKAWTLEGDDSDEE 49
           KRRRRVQEWQEL           +GD    +P +GKAWTLEG+  DEE
Sbjct: 281 KRRRRVQEWQELKRKKEEAESESKGDADGNEPKAGKAWTLEGESDDEE 328


>sp|Q9SF41|RH45_ARATH DEAD-box ATP-dependent RNA helicase 45
           OS=Arabidopsis thaliana GN=RH45 PE=3 SV=1
          Length = 989

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 24/55 (43%), Positives = 31/55 (56%)
 Frame = -2

Query: 192 KRRRRVQEWQELXXXXXXXXXXXRGDTSAAQPNSGKAWTLEGDDSDEEDANGNLD 28
           KRRRRVQEWQEL           +G      P +GKAWTL+G+  DE  ++  +D
Sbjct: 163 KRRRRVQEWQELKRQNEEAQIESKG------PETGKAWTLDGESDDEVKSDSEMD 211


>sp|Q84UQ1|RH42_ORYSJ DEAD-box ATP-dependent RNA helicase 42
           OS=Oryza sativa subsp. japonica GN=Os08g0159900 PE=2
           SV=1
          Length = 1049

 Score = 38.5 bits (88), Expect = 0.011
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 14/61 (22%)
 Frame = -2

Query: 189 RRRRVQEWQELXXXXXXXXXXXRGDT-------SAAQP-------NSGKAWTLEGDDSDE 52
           RRRR++EWQE+           + +        +AA P       N+GK WTL+G++SDE
Sbjct: 176 RRRRIKEWQEMKRREEETKRREQEEAGVGTSAAAAAAPAEAEDGGNAGKKWTLDGEESDE 235

Query: 51  E 49
           E
Sbjct: 236 E 236


>sp|Q0J7Y8|RH45_ORYSJ DEAD-box ATP-dependent RNA helicase 45
           OS=Oryza sativa subsp. japonica GN=Os08g0154200 PE=3
           SV=2
          Length = 947

 Score = 38.1 bits (87), Expect = 0.014
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 12/59 (20%)
 Frame = -2

Query: 189 RRRRVQEWQELXXXXXXXXXXXRGDTSAA------------QPNSGKAWTLEGDDSDEE 49
           RRRRV+EWQE              + +A               N+GK WTL+G++SDEE
Sbjct: 37  RRRRVKEWQEQKRLEEEEAKRREQEAAAGAGTPAAAAGADGDSNAGKKWTLDGEESDEE 95


>sp|Q62780|DDX46_RAT Probable ATP-dependent RNA helicase DDX46
           OS=Rattus norvegicus GN=Ddx46 PE=1 SV=1
          Length = 1032

 Score = 32.0 bits (71), Expect = 1.00
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -2

Query: 192 KRRRRVQEWQELXXXXXXXXXXXRGDTSAAQPNSGKAWTLEGDDSDEED 46
           KR+ RV++W+E                   +   GK W+LE DD DE+D
Sbjct: 162 KRKERVEKWREEQRKKAMENIGEL-KKEIEEMKQGKKWSLEDDDDDEDD 209


>sp|Q5R6D8|DDX46_PONAB Probable ATP-dependent RNA helicase DDX46
           OS=Pongo abelii GN=DDX46 PE=2 SV=1
          Length = 1032

 Score = 32.0 bits (71), Expect = 1.00
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -2

Query: 192 KRRRRVQEWQELXXXXXXXXXXXRGDTSAAQPNSGKAWTLEGDDSDEED 46
           KR+ RV++W+E                   +   GK W+LE DD DE+D
Sbjct: 162 KRKERVEKWREEQRKKAMENIGEL-KKEIEEMKQGKKWSLEDDDDDEDD 209


>sp|Q569Z5|DDX46_MOUSE Probable ATP-dependent RNA helicase DDX46
           OS=Mus musculus GN=Ddx46 PE=2 SV=2
          Length = 1032

 Score = 32.0 bits (71), Expect = 1.00
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -2

Query: 192 KRRRRVQEWQELXXXXXXXXXXXRGDTSAAQPNSGKAWTLEGDDSDEED 46
           KR+ RV++W+E                   +   GK W+LE DD DE+D
Sbjct: 162 KRKERVEKWREEQRKKAMENIGEL-KKEIEEMKQGKKWSLEDDDDDEDD 209


>sp|Q7L014|DDX46_HUMAN Probable ATP-dependent RNA helicase DDX46
           OS=Homo sapiens GN=DDX46 PE=1 SV=2
          Length = 1031

 Score = 32.0 bits (71), Expect = 1.00
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -2

Query: 192 KRRRRVQEWQELXXXXXXXXXXXRGDTSAAQPNSGKAWTLEGDDSDEED 46
           KR+ RV++W+E                   +   GK W+LE DD DE+D
Sbjct: 162 KRKERVEKWREEQRKKAMENIGEL-KKEIEEMKQGKKWSLEDDDDDEDD 209
tr_hit_id A7P8T9
Definition tr|A7P8T9|A7P8T9_VITVI Chromosome chr3 scaffold_8, whole genome shotgun sequence OS=Vitis vinifera
Align length 51
Score (bit) 51.6
E-value 2.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912145|Adiantum capillus-veneris mRNA, clone:
YMU001_000015_F04.
         (298 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7P8T9|A7P8T9_VITVI Chromosome chr3 scaffold_8, whole genome ...    52   2e-05
tr|Q0WM14|Q0WM14_ARATH Putative RNA helicase (Fragment) OS=Arabi...    48   3e-04
tr|A9TSN9|A9TSN9_PHYPA Predicted protein OS=Physcomitrella paten...    46   0.001
tr|B8BAX3|B8BAX3_ORYSI Putative uncharacterized protein OS=Oryza...    39   0.17 
tr|A3BPV3|A3BPV3_ORYSJ Putative uncharacterized protein OS=Oryza...    39   0.17 
tr|B8BAV6|B8BAV6_ORYSI Putative uncharacterized protein OS=Oryza...    38   0.22 
tr|A3BPQ7|A3BPQ7_ORYSJ Putative uncharacterized protein OS=Oryza...    38   0.22 
tr|B3S7I1|B3S7I1_TRIAD Putative uncharacterized protein OS=Trich...    35   1.8  
tr|B5XEX1|B5XEX1_SALSA Anamorsin OS=Salmo salar GN=CPIN1 PE=2 SV=1     33   9.2  
tr|B5DFX9|B5DFX9_SALSA Cytokine induced apoptosis inhibitor 1 OS...    33   9.2  

>tr|A7P8T9|A7P8T9_VITVI Chromosome chr3 scaffold_8, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00036305001
           PE=4 SV=1
          Length = 971

 Score = 51.6 bits (122), Expect = 2e-05
 Identities = 26/51 (50%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
 Frame = -2

Query: 192 KRRRRVQEWQELXXXXXXXXXXXRGDTSAA-QPNSGKAWTLEGDDSDEEDA 43
           KRRRRVQEWQEL            G+ + A +P SGK WTLEG+  DE+ A
Sbjct: 274 KRRRRVQEWQELKRKREESEREKLGEAANADEPKSGKTWTLEGESDDEDVA 324


>tr|Q0WM14|Q0WM14_ARATH Putative RNA helicase (Fragment)
           OS=Arabidopsis thaliana GN=At3g09620 PE=2 SV=1
          Length = 632

 Score = 47.8 bits (112), Expect = 3e-04
 Identities = 24/55 (43%), Positives = 31/55 (56%)
 Frame = -2

Query: 192 KRRRRVQEWQELXXXXXXXXXXXRGDTSAAQPNSGKAWTLEGDDSDEEDANGNLD 28
           KRRRRVQEWQEL           +G      P +GKAWTL+G+  DE  ++  +D
Sbjct: 129 KRRRRVQEWQELKRQNEEAQIESKG------PETGKAWTLDGESDDEVKSDSEMD 177


>tr|A9TSN9|A9TSN9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_149955 PE=3 SV=1
          Length = 1072

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 25/55 (45%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
 Frame = -2

Query: 192 KRRRRVQEWQELXXXXXXXXXXXR------GDTSAAQPNSGKAWTLEGDDSDEED 46
           KRRRRVQEWQEL           R       D  ++  N+ K WTLEG+DSD+E+
Sbjct: 239 KRRRRVQEWQELRRRKDEEDRQKRESVQADADVVSSPKNAKKTWTLEGEDSDDEE 293


>tr|B8BAX3|B8BAX3_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_27901 PE=4 SV=1
          Length = 1049

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 14/61 (22%)
 Frame = -2

Query: 189 RRRRVQEWQELXXXXXXXXXXXRGDT-------SAAQP-------NSGKAWTLEGDDSDE 52
           RRRR++EWQE+           + +        +AA P       N+GK WTL+G++SDE
Sbjct: 176 RRRRIKEWQEMKRREEETKRREQEEAGVGTSAAAAAAPAEAEDGGNAGKKWTLDGEESDE 235

Query: 51  E 49
           E
Sbjct: 236 E 236


>tr|A3BPV3|A3BPV3_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_025075 PE=3 SV=1
          Length = 1039

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 14/61 (22%)
 Frame = -2

Query: 189 RRRRVQEWQELXXXXXXXXXXXRGDT-------SAAQP-------NSGKAWTLEGDDSDE 52
           RRRR++EWQE+           + +        +AA P       N+GK WTL+G++SDE
Sbjct: 176 RRRRIKEWQEMKRREEETKRREQEEAGVGTSAAAAAAPAEAEDGGNAGKKWTLDGEESDE 235

Query: 51  E 49
           E
Sbjct: 236 E 236


>tr|B8BAV6|B8BAV6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_27844 PE=4 SV=1
          Length = 238

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 12/59 (20%)
 Frame = -2

Query: 189 RRRRVQEWQELXXXXXXXXXXXRGDTSAA------------QPNSGKAWTLEGDDSDEE 49
           RRRRV+EWQE              + +A               N+GK WTL+G++SDEE
Sbjct: 16  RRRRVKEWQEQKRLEEEEAKRREQEAAAGAGTPAAAAGADGDSNAGKKWTLDGEESDEE 74


>tr|A3BPQ7|A3BPQ7_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_025029 PE=4 SV=1
          Length = 1574

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 12/59 (20%)
 Frame = -2

Query: 189 RRRRVQEWQELXXXXXXXXXXXRGDTSAA------------QPNSGKAWTLEGDDSDEE 49
           RRRRV+EWQE              + +A               N+GK WTL+G++SDEE
Sbjct: 696 RRRRVKEWQEQKRLEEEEAKRREQEAAAGAGTPAAAAGADGDSNAGKKWTLDGEESDEE 754


>tr|B3S7I1|B3S7I1_TRIAD Putative uncharacterized protein
           OS=Trichoplax adhaerens GN=TRIADDRAFT_30653 PE=4 SV=1
          Length = 976

 Score = 35.0 bits (79), Expect = 1.8
 Identities = 18/48 (37%), Positives = 22/48 (45%)
 Frame = -2

Query: 192 KRRRRVQEWQELXXXXXXXXXXXRGDTSAAQPNSGKAWTLEGDDSDEE 49
           KRR RV+ WQ +             +    Q   GK WTLE DD D+E
Sbjct: 108 KRRERVEAWQRIRKVQLDEQKKVTTEDDEEQ--KGKKWTLEDDDDDDE 153


>tr|B5XEX1|B5XEX1_SALSA Anamorsin OS=Salmo salar GN=CPIN1 PE=2 SV=1
          Length = 313

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 117 DTSAAQPNSGKAWTLEGDDSDEEDAN 40
           D  A  PN+ KAWTL  +D D++D +
Sbjct: 185 DKPALDPNAAKAWTLSANDMDDDDVD 210


>tr|B5DFX9|B5DFX9_SALSA Cytokine induced apoptosis inhibitor 1
           OS=Salmo salar GN=ciapin1 PE=2 SV=1
          Length = 312

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 117 DTSAAQPNSGKAWTLEGDDSDEEDAN 40
           D  A  PN+ KAWTL  +D D++D +
Sbjct: 184 DKPALDPNAAKAWTLSANDMDDDDVD 209