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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912164
Clone id YMU001_000015_G12
Library
Length 593
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000015_G12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTGGGCAATCCACTTGAGTGGGACATCAAAGTCATACGGCACATGCTCCATAGCCAAATA
CCAAAACTTTTGCTTGCCTGTATATTAGCCAATTTCTATATGAAGCAACAAAGGTCTTGA
ATGCACCAGGAGAGCACACAGTCCCTGCATCTCATTGCAGTAAGAAGATGTTCTGATGAA
ATTTCCAGCCATCATTGGGCAAGAATGGCCCAATCCCTTAATCAAAGCATGAGCTGAGAC
CAGGAAGGGACACCAATTCTAGAGCCACCCCGGATAATATAAGGTACGCACTTACCTCGT
CCTTGCAAAATAGAAATGCATGTGGTAATGAATAACTTCTGTAGAACCCATCCATTTTCG
TACTTCATGAAACCGTAAGTCAGCATTGGCAAGTATCATATTATTTTGGAACATCAACGT
CACTCTGCAGAGCTAAAGAGCAAAATCCACTTCCTTGGAGCAGTTAATCAAACAAAACCC
TTGTCAGTACCTTTGATAAAACAAAAACCCTACTGTCCAACTCGACAGCAGAAGCAACTC
ACGTCATTGCTTCATAATGAGCAACAACATCAAGAGTACCTGCAGGTAATATC
■■Homology search results ■■ -
sp_hit_id Q117V9
Definition sp|Q117V9|HYPA_TRIEI Probable hydrogenase nickel incorporation protein hypA OS=Trichodesmium erythraeum (strain IMS101)
Align length 34
Score (bit) 34.3
E-value 0.48
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912164|Adiantum capillus-veneris mRNA, clone:
YMU001_000015_G12.
         (593 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q117V9|HYPA_TRIEI Probable hydrogenase nickel incorporation p...    34   0.48 
sp|Q3M482|HYPA_ANAVT Probable hydrogenase nickel incorporation p...    34   0.48 
sp|Q9Z7V1|HEMH_CHLPN Ferrochelatase OS=Chlamydia pneumoniae GN=h...    34   0.63 
sp|Q9EYH3|HYPA_NOSP7 Hydrogenase nickel incorporation protein hy...    32   1.8  
sp|Q45256|HYPA2_BRAJA Probable hydrogenase nickel incorporation ...    32   1.8  
sp|Q21R10|HYPA_RHOFD Probable hydrogenase nickel incorporation p...    32   2.4  
sp|A4YNU5|HYPA_BRASO Probable hydrogenase nickel incorporation p...    31   4.1  
sp|Q478M5|HYPA_DECAR Probable hydrogenase nickel incorporation p...    30   7.0  
sp|O30461|HYPA_ANASP Hydrogenase nickel incorporation protein hy...    30   7.0  
sp|Q9ANP8|HYPA1_BRAJA Probable hydrogenase nickel incorporation ...    30   7.0  
sp|Q8YMT3|SURE_ANASP 5'-nucleotidase surE OS=Anabaena sp. (strai...    30   9.1  

>sp|Q117V9|HYPA_TRIEI Probable hydrogenase nickel incorporation
           protein hypA OS=Trichodesmium erythraeum (strain IMS101)
           GN=hypA PE=3 SV=1
          Length = 114

 Score = 34.3 bits (77), Expect = 0.48
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 328 LPHAFLFCKDEVSAYLILSGVALELVSLPGLSSC 227
           +P+A  FC D  +   +L G  LE++ +PGL  C
Sbjct: 37  MPNAIEFCFDVCTQGTVLEGATLEIIKIPGLGKC 70


>sp|Q3M482|HYPA_ANAVT Probable hydrogenase nickel incorporation
           protein hypA OS=Anabaena variabilis (strain ATCC 29413 /
           PCC 7937) GN=hypA PE=3 SV=1
          Length = 113

 Score = 34.3 bits (77), Expect = 0.48
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -2

Query: 328 LPHAFLFCKDEVSAYLILSGVALELVSLPGLSSC 227
           +P A  FC D  S   +L G  LE++ +PGL+ C
Sbjct: 37  MPDAIKFCFDICSQGTVLEGAVLEILEIPGLAKC 70


>sp|Q9Z7V1|HEMH_CHLPN Ferrochelatase OS=Chlamydia pneumoniae GN=hemH
           PE=3 SV=1
          Length = 327

 Score = 33.9 bits (76), Expect = 0.63
 Identities = 31/117 (26%), Positives = 44/117 (37%), Gaps = 5/117 (4%)
 Frame = -3

Query: 336 VIHYHMHFYFARTR*VRTLYYPGWL*NWCPFLVSAHALIKGLGHSCPMMAGNFIRTSSYC 157
           V+H H+  + A+ R  + L     L NW P       L K L          F R     
Sbjct: 41  VLHRHLFTFIAKKRVPKVLPQYQSLQNWSPIYFDTETLAKTLSEILRAPVIPFHRYLPST 100

Query: 156 NEMQGLCALLVHSR-----PLLLHIEIG*YTGKQKFWYLAMEHVPYDFDVPLKWIAQ 1
           +E   L    +H+R     PL  H     Y+         M+HVP   ++P+ WI Q
Sbjct: 101 HEKTLLALRTLHTRHVIGIPLFPHFT---YSVTGSIVRFFMKHVP---EIPISWIPQ 151


>sp|Q9EYH3|HYPA_NOSP7 Hydrogenase nickel incorporation protein hypA
           OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102)
           GN=hypA PE=3 SV=1
          Length = 113

 Score = 32.3 bits (72), Expect = 1.8
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 328 LPHAFLFCKDEVSAYLILSGVALELVSLPGLSSC 227
           +P A  FC D  +   +L G  LE++ +PGL  C
Sbjct: 37  MPDAIRFCFDICTQGTVLEGATLEILEIPGLGRC 70


>sp|Q45256|HYPA2_BRAJA Probable hydrogenase nickel incorporation
           protein hypA 2 OS=Bradyrhizobium japonicum GN=hypA2 PE=3
           SV=1
          Length = 113

 Score = 32.3 bits (72), Expect = 1.8
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -2

Query: 337 SYSLPHAFLFCKDEVSAYLILSGVALELVSLPGLSSC 227
           S+  P A  FC + V+A  I  G  LE+V  PG + C
Sbjct: 37  SHVAPEALQFCFEAVAARTIAQGAKLEIVETPGTAWC 73


>sp|Q21R10|HYPA_RHOFD Probable hydrogenase nickel incorporation
           protein hypA OS=Rhodoferax ferrireducens (strain DSM
           15236 / ATCC BAA-621 / T118) GN=hypA PE=3 SV=1
          Length = 113

 Score = 32.0 bits (71), Expect = 2.4
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 325 PHAFLFCKDEVSAYLILSGVALELVSLPGLSSC 227
           P A +FC D V+   +  G  LE+++LPG + C
Sbjct: 41  PEAMVFCFDAVTRDSVAQGARLEIMTLPGTAWC 73


>sp|A4YNU5|HYPA_BRASO Probable hydrogenase nickel incorporation
           protein hypA OS=Bradyrhizobium sp. (strain ORS278)
           GN=hypA PE=3 SV=1
          Length = 113

 Score = 31.2 bits (69), Expect = 4.1
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 337 SYSLPHAFLFCKDEVSAYLILSGVALELVSLPGLSSC 227
           S+  P A  FC + V+A+ I  G ALE++   G + C
Sbjct: 37  SHVAPEALRFCFEAVTAHTIARGAALEIIEQKGSAWC 73


>sp|Q478M5|HYPA_DECAR Probable hydrogenase nickel incorporation
           protein hypA OS=Dechloromonas aromatica (strain RCB)
           GN=hypA PE=3 SV=1
          Length = 113

 Score = 30.4 bits (67), Expect = 7.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 325 PHAFLFCKDEVSAYLILSGVALELVSLPGLSSC 227
           P A  FC + V+   I  G ALE++++PG   C
Sbjct: 41  PEAIKFCFEAVTHGSIAQGAALEIIAVPGAGWC 73


>sp|O30461|HYPA_ANASP Hydrogenase nickel incorporation protein hypA
           OS=Anabaena sp. (strain PCC 7120) GN=hypA PE=3 SV=1
          Length = 113

 Score = 30.4 bits (67), Expect = 7.0
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 328 LPHAFLFCKDEVSAYLILSGVALELVSLPGLSSC 227
           +P A  FC D  S    L G  LE+  +PGL+ C
Sbjct: 37  MPDAVQFCFDICSKGTSLEGAVLEIREIPGLAKC 70


>sp|Q9ANP8|HYPA1_BRAJA Probable hydrogenase nickel incorporation
           protein hypA 1 OS=Bradyrhizobium japonicum GN=hypA1 PE=3
           SV=1
          Length = 113

 Score = 30.4 bits (67), Expect = 7.0
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 337 SYSLPHAFLFCKDEVSAYLILSGVALELVSLPGLSSC 227
           S++ P A  FC    +   +  G AL +V LPG++ C
Sbjct: 37  SHAAPEAIRFCFAVAAMRTVAEGAALNIVELPGVAWC 73
tr_hit_id Q1K0G9
Definition tr|Q1K0G9|Q1K0G9_DESAC Putative uncharacterized protein OS=Desulfuromonas acetoxidans DSM 684
Align length 51
Score (bit) 34.7
E-value 4.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912164|Adiantum capillus-veneris mRNA, clone:
YMU001_000015_G12.
         (593 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q1K0G9|Q1K0G9_DESAC Putative uncharacterized protein OS=Desul...    35   4.2  
tr|Q8GKU5|Q8GKU5_ANAVA HypA-like protein OS=Anabaena variabilis ...    34   5.5  
tr|B4AX53|B4AX53_9CHRO Hydrogenase nickel insertion protein HypA...    34   7.2  

>tr|Q1K0G9|Q1K0G9_DESAC Putative uncharacterized protein
           OS=Desulfuromonas acetoxidans DSM 684 GN=Dace_2272 PE=4
           SV=1
          Length = 94

 Score = 34.7 bits (78), Expect = 4.2
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +1

Query: 442 KIHFLGAVNQTKPLSVPLIKQKPYCPTRQQ-KQLTSLLHNEQQHQEYLQVI 591
           K+H  GAVNQ  P+S   IKQ+P          + + LHNEQQ QE  +++
Sbjct: 36  KVH--GAVNQVLPVSQDAIKQRPSTKGAYVCVSVLTYLHNEQQRQEIYRLL 84


>tr|Q8GKU5|Q8GKU5_ANAVA HypA-like protein OS=Anabaena variabilis
           GN=hypA PE=4 SV=1
          Length = 113

 Score = 34.3 bits (77), Expect = 5.5
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -2

Query: 328 LPHAFLFCKDEVSAYLILSGVALELVSLPGLSSC 227
           +P A  FC D  S   +L G  LE++ +PGL+ C
Sbjct: 37  MPDAIKFCFDICSQGTVLEGAVLEILEIPGLAKC 70


>tr|B4AX53|B4AX53_9CHRO Hydrogenase nickel insertion protein HypA
           OS=Cyanothece sp. PCC 7822 GN=Cyan7822DRAFT_0945 PE=4
           SV=1
          Length = 114

 Score = 33.9 bits (76), Expect = 7.2
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 328 LPHAFLFCKDEVSAYLILSGVALELVSLPGLSSC 227
           +P A  FC D      +L G  LE+V +PGL  C
Sbjct: 37  MPEAIRFCFDVCCQDTVLEGATLEIVEIPGLGKC 70