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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912165
Clone id YMU001_000015_H01
Library
Length 573
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000015_H01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTACTCTCAAGGTATGTGACAATGGTGCCAAGACAACACACTTGGCAAAGCCTGTTACTG
GCAAAGGGTCGCCTGCTACAGTTGGTCAAGAGCCCAACATGGACAAGGAAAGGCGGCGAG
TTGACAAAGAGAATATCAAGTTCGCAGGCAAAGATGGATCTTTGGTAATGGCTTGAAAGC
TTACATGTGCCGCCCCCCATTGAAAAGCTCGAGCTCGCTGAGTTTCGGTTGCCAGCTTGC
TGGGAGGAAGCTTTATCCTGCATATTTGCCTGAGATGGGTTATGTGCTGATATTTTGAGT
ATATTCGAGTTTCTTGGGTTTTGTAATTTTCTAATTTCTGGTTTTGCCCCATTTTTGCTG
TTGTATAGCGCATGTGAATTTTATAGCCCAGCTTTTGCAGCGACAGAAAGGGGTGCTTTG
GGGTCAGATGGCCTGTGTATGGTATGATGTGGGTGCCAGCCTTTGAGGTATTTGTCGAAG
GAATTTGGGTGCTAGCCCCAACAGGTTTCAAAGCCTTCTCTTACTAGCCCAAACTTGTAA
CCCGTATATGAAGCTGATTATTTTCCAGCTCTC
■■Homology search results ■■ -
sp_hit_id Q01778
Definition sp|Q01778|HUNB_MUSDO Protein hunchback OS=Musca domestica
Align length 66
Score (bit) 35.0
E-value 0.26
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912165|Adiantum capillus-veneris mRNA, clone:
YMU001_000015_H01.
         (573 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q01778|HUNB_MUSDO Protein hunchback OS=Musca domestica GN=hb ...    35   0.26 
sp|P50242|ESR1_SALSA Estrogen receptor (Fragment) OS=Salmo salar...    31   5.0  
sp|A1L3F5|CMIP_XENLA C-Maf-inducing protein OS=Xenopus laevis GN...    31   5.0  
sp|P55197|AF10_HUMAN Protein AF-10 OS=Homo sapiens GN=MLLT10 PE=...    31   5.0  
sp|A7MH59|MNMC_ENTS8 tRNA 5-methylaminomethyl-2-thiouridine bios...    30   6.5  
sp|Q9C104|GDE1_SCHPO Glycerophosphodiester phosphodiesterase gde...    30   6.6  
sp|Q6UIM1|ZNHI3_MACMU Zinc finger HIT domain-containing protein ...    30   8.5  
sp|B3LVW5|PDE6_DROAN cGMP-specific 3',5'-cyclic phosphodiesteras...    30   8.5  
sp|P32639|BRR2_YEAST Pre-mRNA-splicing helicase BRR2 OS=Saccharo...    30   8.5  
sp|Q91ZU6|BPA1_MOUSE Bullous pemphigoid antigen 1, isoforms 1/2/...    30   8.5  
sp|O54826|AF10_MOUSE Protein AF-10 OS=Mus musculus GN=Mllt10 PE=...    30   8.5  

>sp|Q01778|HUNB_MUSDO Protein hunchback OS=Musca domestica GN=hb
           PE=3 SV=2
          Length = 817

 Score = 35.0 bits (79), Expect = 0.26
 Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
 Frame = -2

Query: 284 HNPSQANMQDKASSQQAGN-RNSASSSFSMGGGTCKLSSHYQRSIFACE-LDILFVNSPP 111
           HNP+ AN    +++  +GN  NS+S+S S    +    +    +++ C+  DI F ++  
Sbjct: 719 HNPTTANTSASSTASSSGNSSNSSSTSTSSNSNSSSAGNSPNTTMYECKYCDIFFKDAVL 778

Query: 110 FLVHVG 93
           + +H+G
Sbjct: 779 YTIHMG 784


>sp|P50242|ESR1_SALSA Estrogen receptor (Fragment) OS=Salmo salar
           GN=esr1 PE=2 SV=1
          Length = 535

 Score = 30.8 bits (68), Expect = 5.0
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -2

Query: 266 NMQDKASSQQAGNRNSASSSFSMGGGTC 183
           +++ + +  Q G RNS+SSS S GGG C
Sbjct: 203 DLEHRTAPPQDGGRNSSSSSLSGGGGWC 230


>sp|A1L3F5|CMIP_XENLA C-Maf-inducing protein OS=Xenopus laevis
           GN=cmip PE=2 SV=1
          Length = 739

 Score = 30.8 bits (68), Expect = 5.0
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 7/42 (16%)
 Frame = -2

Query: 548 YTGYKFGLVREG-FETCWG*HPNSF------DKYLKGWHPHH 444
           ++G ++ L++EG  + C   HP +F       K+L+ W PHH
Sbjct: 13  FSGMRYKLLQEGDIQVCAIRHPRTFLSKILTSKFLRRWEPHH 54


>sp|P55197|AF10_HUMAN Protein AF-10 OS=Homo sapiens GN=MLLT10 PE=1
           SV=1
          Length = 1027

 Score = 30.8 bits (68), Expect = 5.0
 Identities = 23/103 (22%), Positives = 40/103 (38%), Gaps = 4/103 (3%)
 Frame = -2

Query: 491 HPNSFDKYLKGWHPHHTIHRPSDPKAPLSVAAKAGL*NSHALYNSKNGAKPEIRKLQNPR 312
           H     K  K    H   H+     +P  V +            S N     +++L++  
Sbjct: 227 HHEKEKKKYKEKDKHKQKHKKQPEPSPALVPSLTVTTEKTYTSTSNNSISGSLKRLEDTT 286

Query: 311 ----NSNILKISAHNPSQANMQDKASSQQAGNRNSASSSFSMG 195
               N+N  ++SAH  S  ++ +   S+  G ++SA SS   G
Sbjct: 287 ARFTNANFQEVSAHTSSGKDVSETRGSEGKGKKSSAHSSGQRG 329


>sp|A7MH59|MNMC_ENTS8 tRNA 5-methylaminomethyl-2-thiouridine
           biosynthesis bifunctional protein mnmC OS=Enterobacter
           sakazakii (strain ATCC BAA-894) GN=mnmC PE=3 SV=2
          Length = 670

 Score = 30.4 bits (67), Expect = 6.5
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
 Frame = -3

Query: 505 PVGAS-TQIPSTNTSKAGTHIIPYTGHLTPKHPFLSLQKLGYKIH-----MRYTTAKMGQ 344
           PVG   + IP+T    A   ++ Y G+LTP++P  ++  +G   H     MRY      +
Sbjct: 479 PVGGQVSHIPTTPGLGALRQVLCYDGYLTPQNPANAMHCIGASYHRGVSEMRYQEEDQQR 538

Query: 343 NQK 335
           N++
Sbjct: 539 NRQ 541


>sp|Q9C104|GDE1_SCHPO Glycerophosphodiester phosphodiesterase gde1
           OS=Schizosaccharomyces pombe GN=gde1 PE=1 SV=1
          Length = 1076

 Score = 30.4 bits (67), Expect = 6.6
 Identities = 20/58 (34%), Positives = 31/58 (53%)
 Frame = +1

Query: 127 KRISSSQAKMDLW*WLESLHVPPPIEKLELAEFRLPACWEEALSCIFA*DGLCADILS 300
           K ++SSQ   ++   LE L +  P++K  LA  +L    E   +CI A D +  DIL+
Sbjct: 118 KALNSSQNDSEVKDKLEKLSIHHPLKKDLLAFIQLDIAAEVVTACINAPDSVLVDILA 175


>sp|Q6UIM1|ZNHI3_MACMU Zinc finger HIT domain-containing protein 3
           (Fragment) OS=Macaca mulatta GN=ZNHIT3 PE=2 SV=1
          Length = 147

 Score = 30.0 bits (66), Expect = 8.5
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +3

Query: 27  AKTTHLAKPVTGKGSPATVGQEPNMDKERRRVDKENIKFAGKDGSL 164
           A  T   KPV  K    ++    N D+E  RV  +N+K  GK  +L
Sbjct: 48  ALPTKTXKPVENKDDDDSIADFLNSDEEEDRVSLQNLKNLGKSATL 93


>sp|B3LVW5|PDE6_DROAN cGMP-specific 3',5'-cyclic phosphodiesterase
            OS=Drosophila ananassae GN=Pde6 PE=3 SV=1
          Length = 1158

 Score = 30.0 bits (66), Expect = 8.5
 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
 Frame = -2

Query: 377  SHALYNSKNGAKPE--IRKLQNPRNSNILKISAHNPSQANMQDKASSQQAGN--RNSASS 210
            S  LYNS +G+KP+  ++ L++  + ++   S  +PSQ         Q AG+  R SASS
Sbjct: 1074 SKTLYNSMDGSKPKTSLKLLESHVSEDMDDKSPTSPSQ--------PQAAGSMGRMSASS 1125

Query: 209  SFSMGGG 189
            S S  GG
Sbjct: 1126 STSSAGG 1132


>sp|P32639|BRR2_YEAST Pre-mRNA-splicing helicase BRR2 OS=Saccharomyces
            cerevisiae GN=BRR2 PE=1 SV=2
          Length = 2163

 Score = 30.0 bits (66), Expect = 8.5
 Identities = 20/67 (29%), Positives = 33/67 (49%)
 Frame = -2

Query: 281  NPSQANMQDKASSQQAGNRNSASSSFSMGGGTCKLSSHYQRSIFACELDILFVNSPPFLV 102
            N S   M  +AS+  AGNRNS+S          +++S + +   A E D+L V     + 
Sbjct: 1560 NFSMLQMAFEASAAAAGNRNSSSVFLPSRKDCMEVASAFMKFSKAIEWDMLNVEEEQIVP 1619

Query: 101  HVGLLTN 81
            ++  LT+
Sbjct: 1620 YIEKLTD 1626


>sp|Q91ZU6|BPA1_MOUSE Bullous pemphigoid antigen 1, isoforms 1/2/3/4
            OS=Mus musculus GN=Dst PE=1 SV=1
          Length = 7389

 Score = 30.0 bits (66), Expect = 8.5
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
 Frame = -2

Query: 455  HPHHTIHRPSDPKAPLSV-AAKAGL*NSHALYNSKNGAKPEIRKLQNPRNSNILKISAHN 279
            HP  T     + +A LS   A  G+    +L N++  A  EIR +Q P +S ILK     
Sbjct: 2654 HPELTTEADEEDEASLSTHMATKGV----SLSNAEGTASEEIRLVQGPDSSGILKAE--- 2706

Query: 278  PSQANMQDKASSQQAGNRNSASSSFSMGGG 189
                ++++ +      + N   S   +GGG
Sbjct: 2707 ----DLENVSPEISPSSDNIVRSEAELGGG 2732
tr_hit_id A5UAN9
Definition tr|A5UAN9|A5UAN9_HAEIE Thioredoxin-dependent thiol peroxidase OS=Haemophilus influenzae (strain PittEE)
Align length 46
Score (bit) 35.8
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912165|Adiantum capillus-veneris mRNA, clone:
YMU001_000015_H01.
         (573 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5UAN9|A5UAN9_HAEIE Thioredoxin-dependent thiol peroxidase OS...    36   1.7  
tr|A4NLT8|A4NLT8_HAEIN TonB OS=Haemophilus influenzae PittHH GN=...    36   1.7  
tr|A4NG09|A4NG09_HAEIN TonB OS=Haemophilus influenzae PittAA GN=...    36   1.7  
tr|Q21FN4|Q21FN4_SACD2 Polysaccharide lyase-like protein OS=Sacc...    35   2.3  
tr|Q5CV93|Q5CV93_CRYPV Trehalose-6-phosphate synthase of likely ...    35   2.3  
tr|Q967A4|Q967A4_MUSDO Hunchback (Fragment) OS=Musca domestica P...    35   3.0  
tr|Q967A3|Q967A3_MUSDO Hunchback (Fragment) OS=Musca domestica P...    35   3.0  
tr|Q967A2|Q967A2_MUSDO Hunchback (Fragment) OS=Musca domestica P...    35   3.0  
tr|Q967A1|Q967A1_MUSDO Hunchback (Fragment) OS=Musca domestica P...    35   3.0  
tr|Q967A0|Q967A0_MUSDO Hunchback (Fragment) OS=Musca domestica P...    35   3.0  
tr|Q4H3L4|Q4H3L4_CIOIN Mitogen-activated protein kinase OS=Ciona...    35   3.0  
tr|Q2QM35|Q2QM35_ORYSJ Os12g0619000 protein OS=Oryza sativa subs...    35   3.9  
tr|B8BN20|B8BN20_ORYSI Putative uncharacterized protein OS=Oryza...    35   3.9  
tr|A3CJI1|A3CJI1_ORYSJ Putative uncharacterized protein OS=Oryza...    35   3.9  
tr|Q24BZ6|Q24BZ6_TETTH Putative uncharacterized protein OS=Tetra...    35   3.9  
tr|B6KNT1|B6KNT1_TOXGO Putative uncharacterized protein OS=Toxop...    35   3.9  
tr|B4NFC6|B4NFC6_DROWI GK22618 OS=Drosophila willistoni GN=GK226...    35   3.9  
tr|B4L4C3|B4L4C3_DROMO GI15729 OS=Drosophila mojavensis GN=GI157...    35   3.9  
tr|A4N8J2|A4N8J2_HAEIN TonB OS=Haemophilus influenzae 3655 GN=CG...    34   5.0  
tr|A5K2N2|A5K2N2_PLAVI Putative uncharacterized protein OS=Plasm...    34   6.6  
tr|A8PXW4|A8PXW4_MALGO Putative uncharacterized protein OS=Malas...    33   8.6  
tr|B4KGK1|B4KGK1_DROMO GI18084 OS=Drosophila mojavensis GN=GI180...    33   8.6  
tr|B4JFH9|B4JFH9_DROGR GH19324 OS=Drosophila grimshawi GN=GH1932...    33   8.6  
tr|B3LY94|B3LY94_DROAN GF18765 OS=Drosophila ananassae GN=GF1876...    33   8.6  

>tr|A5UAN9|A5UAN9_HAEIE Thioredoxin-dependent thiol peroxidase
           OS=Haemophilus influenzae (strain PittEE) GN=bcp PE=4
           SV=1
          Length = 263

 Score = 35.8 bits (81), Expect = 1.7
 Identities = 18/46 (39%), Positives = 26/46 (56%)
 Frame = -2

Query: 356 KNGAKPEIRKLQNPRNSNILKISAHNPSQANMQDKASSQQAGNRNS 219
           KN  K E++  Q P N ++ K   +  S AN+ DKAS+  A N N+
Sbjct: 116 KNKPKKEVKPQQKPINKDLPKGDKNIDSSANVNDKASTTSAANSNA 161


>tr|A4NLT8|A4NLT8_HAEIN TonB OS=Haemophilus influenzae PittHH
           GN=CGSHiHH_00508 PE=4 SV=1
          Length = 267

 Score = 35.8 bits (81), Expect = 1.7
 Identities = 18/46 (39%), Positives = 26/46 (56%)
 Frame = -2

Query: 356 KNGAKPEIRKLQNPRNSNILKISAHNPSQANMQDKASSQQAGNRNS 219
           KN  K E++  Q P N ++ K   +  S AN+ DKAS+  A N N+
Sbjct: 120 KNKPKKEVKPQQKPINKDLPKGDKNIDSSANVNDKASTTSAANSNA 165


>tr|A4NG09|A4NG09_HAEIN TonB OS=Haemophilus influenzae PittAA
           GN=CGSHiAA_01765 PE=4 SV=1
          Length = 261

 Score = 35.8 bits (81), Expect = 1.7
 Identities = 18/46 (39%), Positives = 26/46 (56%)
 Frame = -2

Query: 356 KNGAKPEIRKLQNPRNSNILKISAHNPSQANMQDKASSQQAGNRNS 219
           KN  K E++  Q P N ++ K   +  S AN+ DKAS+  A N N+
Sbjct: 114 KNKPKKEVKPQQKPINKDLPKGDKNIDSSANVNDKASTTSAANSNA 159


>tr|Q21FN4|Q21FN4_SACD2 Polysaccharide lyase-like protein
           OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 /
           DSM 17024) GN=ply9B PE=4 SV=1
          Length = 652

 Score = 35.4 bits (80), Expect = 2.3
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = -2

Query: 335 IRKLQNPRNSNILKISAHNPSQANMQDKASSQQAGNRNSASSSFSMGGGTC 183
           ++ L    N N L I+    S ++    +SS  + + +S+SSS S GGG C
Sbjct: 508 VKFLDGSTNFNYLNITTGGSSSSSSSSSSSSSSSSSSSSSSSSSSSGGGAC 558


>tr|Q5CV93|Q5CV93_CRYPV Trehalose-6-phosphate synthase of likely
           plant origin OS=Cryptosporidium parvum Iowa II
           GN=cgd8_4940 PE=4 SV=1
          Length = 1417

 Score = 35.4 bits (80), Expect = 2.3
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = -2

Query: 311 NSNILKISAHNPSQANMQDKASSQQAGNRNSASSSFSMGGGTCKLSSHYQRS 156
           NSN LK + H      + D +SS  +GN +++SSS S    +   SS Y  S
Sbjct: 479 NSNSLKNNGHRIIGNGVSDTSSSSSSGNSSNSSSSSSSSSSSSSSSSEYSES 530


>tr|Q967A4|Q967A4_MUSDO Hunchback (Fragment) OS=Musca domestica PE=4
           SV=1
          Length = 540

 Score = 35.0 bits (79), Expect = 3.0
 Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
 Frame = -2

Query: 284 HNPSQANMQDKASSQQAGN-RNSASSSFSMGGGTCKLSSHYQRSIFACE-LDILFVNSPP 111
           HNP+ AN    +++  +GN  NS+S+S S    +    +    +++ C+  DI F ++  
Sbjct: 443 HNPTTANTSASSTASSSGNSSNSSSTSTSSNSNSSSAGNSPNTTMYECKYCDIFFKDAVL 502

Query: 110 FLVHVG 93
           + +H+G
Sbjct: 503 YTIHMG 508


>tr|Q967A3|Q967A3_MUSDO Hunchback (Fragment) OS=Musca domestica PE=4
           SV=1
          Length = 538

 Score = 35.0 bits (79), Expect = 3.0
 Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
 Frame = -2

Query: 284 HNPSQANMQDKASSQQAGN-RNSASSSFSMGGGTCKLSSHYQRSIFACE-LDILFVNSPP 111
           HNP+ AN    +++  +GN  NS+S+S S    +    +    +++ C+  DI F ++  
Sbjct: 441 HNPTTANTSASSTASSSGNSSNSSSTSTSSNSNSSSAGNSPNTTMYECKYCDIFFKDAVL 500

Query: 110 FLVHVG 93
           + +H+G
Sbjct: 501 YTIHMG 506


>tr|Q967A2|Q967A2_MUSDO Hunchback (Fragment) OS=Musca domestica PE=4
           SV=1
          Length = 538

 Score = 35.0 bits (79), Expect = 3.0
 Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
 Frame = -2

Query: 284 HNPSQANMQDKASSQQAGN-RNSASSSFSMGGGTCKLSSHYQRSIFACE-LDILFVNSPP 111
           HNP+ AN    +++  +GN  NS+S+S S    +    +    +++ C+  DI F ++  
Sbjct: 440 HNPTTANTSASSTASSSGNSSNSSSTSTSSNSNSSSAGNSPNTTMYECKYCDIFFKDAVL 499

Query: 110 FLVHVG 93
           + +H+G
Sbjct: 500 YTIHMG 505


>tr|Q967A1|Q967A1_MUSDO Hunchback (Fragment) OS=Musca domestica PE=4
           SV=1
          Length = 521

 Score = 35.0 bits (79), Expect = 3.0
 Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
 Frame = -2

Query: 284 HNPSQANMQDKASSQQAGN-RNSASSSFSMGGGTCKLSSHYQRSIFACE-LDILFVNSPP 111
           HNP+ AN    +++  +GN  NS+S+S S    +    +    +++ C+  DI F ++  
Sbjct: 442 HNPTTANTSASSTASSSGNSSNSSSTSTSSNSNSSSAGNSPNTTMYECKYCDIFFKDAVL 501

Query: 110 FLVHVG 93
           + +H+G
Sbjct: 502 YTIHMG 507


>tr|Q967A0|Q967A0_MUSDO Hunchback (Fragment) OS=Musca domestica PE=4
           SV=1
          Length = 541

 Score = 35.0 bits (79), Expect = 3.0
 Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
 Frame = -2

Query: 284 HNPSQANMQDKASSQQAGN-RNSASSSFSMGGGTCKLSSHYQRSIFACE-LDILFVNSPP 111
           HNP+ AN    +++  +GN  NS+S+S S    +    +    +++ C+  DI F ++  
Sbjct: 443 HNPTTANTSASSTASSSGNSSNSSSTSTSSNSNSSSAGNSPNTTMYECKYCDIFFKDAVL 502

Query: 110 FLVHVG 93
           + +H+G
Sbjct: 503 YTIHMG 508