BP912166 |
Clone id |
YMU001_000015_H03 |
Library |
YMU01 |
Length |
494 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000015_H03. |
Accession |
BP912166 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL4272Contig1 |
Sequence |
CGTAACTTCTTGTGCTTCCTGTCCTTGTCTTTAAACTCTTCTTTCATTTTACAACTGATA GTAGGCACACCTCGATCAGCCTCTGTCAACGAAATGGAGTCCGACTCTCTCAAAGTGAAC GCCTGCTGCAATACATCAATATCAAATGGATGTATATGCACACCACCAGCCTCAATATCA GGGCCAAGCAGTTGCCCTAACTCCATTCCTTCCCCCCTTCGAATATCAAAATCACCAACC ACGTTTCTCAAATAGTTCGACTCCCCAATTGAAACAGGCAAAGGTTTTTGACAAAACTTC TCATGCAATTCCCTTAGACCATAATGGCTGAGCAAGTCTGCCGCTCCTGTAAGTTCTCGG CTTCTGGGAGCTGAAGTAATAAGCCGGAAAGGACCACCGGAGTCATCTGTCCGATTGCCT GATGTGGCCATAGCCTTAAGCTTCTGCAAAATCAAGGCATGATGTGCGATTCACGCCATG CTTTACAGCATCCC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
A0JLT2 |
Definition |
sp|A0JLT2|MED19_HUMAN Mediator of RNA polymerase II transcription subunit 19 OS=Homo sapiens |
Align length |
72 |
Score (bit) |
50.4 |
E-value |
4.0e-06 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9TTB7 |
Definition |
tr|A9TTB7|A9TTB7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
135 |
Score (bit) |
142.0 |
E-value |
9.0e-33 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP912166|Adiantum capillus-veneris mRNA, clone: YMU001_000015_H03. (494 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9TTB7|A9TTB7_PHYPA Predicted protein OS=Physcomitrella paten... 142 9e-33 tr|Q0ILX9|Q0ILX9_ORYSJ Os12g0614000 protein (Fragment) OS=Oryza ... 132 9e-30 tr|B7EFD0|B7EFD0_ORYSJ cDNA clone:J013162A19, full insert sequen... 132 9e-30 tr|A3CJE7|A3CJE7_ORYSJ Putative uncharacterized protein OS=Oryza... 132 9e-30 tr|B8BN00|B8BN00_ORYSI Putative uncharacterized protein OS=Oryza... 130 3e-29 tr|A9RG55|A9RG55_PHYPA Predicted protein OS=Physcomitrella paten... 129 6e-29 tr|B6UCR9|B6UCR9_MAIZE Putative uncharacterized protein OS=Zea m... 128 1e-28 tr|B4FGE9|B4FGE9_MAIZE Putative uncharacterized protein OS=Zea m... 128 1e-28 tr|A9RTR5|A9RTR5_PHYPA Predicted protein OS=Physcomitrella paten... 128 2e-28 tr|B4FUQ2|B4FUQ2_MAIZE Putative uncharacterized protein OS=Zea m... 127 3e-28 tr|A5BS30|A5BS30_VITVI Putative uncharacterized protein OS=Vitis... 127 3e-28 tr|Q9FMP0|Q9FMP0_ARATH Genomic DNA, chromosome 5, P1 clone:MXC9 ... 126 6e-28 tr|Q6NMK7|Q6NMK7_ARATH At5g12230 OS=Arabidopsis thaliana PE=2 SV=1 126 6e-28 tr|B4FFN1|B4FFN1_MAIZE Putative uncharacterized protein OS=Zea m... 123 5e-27 tr|Q6AST9|Q6AST9_ORYSJ Os03g0641700 protein OS=Oryza sativa subs... 122 7e-27 tr|B8AN43|B8AN43_ORYSI Putative uncharacterized protein OS=Oryza... 122 7e-27 tr|A3AKR8|A3AKR8_ORYSJ Putative uncharacterized protein OS=Oryza... 122 7e-27 tr|Q6NQD9|Q6NQD9_ARATH At5g19480 (Putative uncharacterized prote... 108 1e-22 tr|B7FN33|B7FN33_MEDTR Putative uncharacterized protein OS=Medic... 64 5e-09 tr|A7YWK4|A7YWK4_BOVIN MED19 protein OS=Bos taurus GN=MED19 PE=2... 49 2e-04 tr|B6NYI7|B6NYI7_BRAFL Putative uncharacterized protein OS=Branc... 47 4e-04 tr|B6MS72|B6MS72_BRAFL Putative uncharacterized protein OS=Branc... 47 4e-04 tr|Q7PYX5|Q7PYX5_ANOGA AGAP011626-PA OS=Anopheles gambiae GN=AGA... 44 0.003 tr|B0X2N9|B0X2N9_CULQU Mediator complex OS=Culex quinquefasciatu... 44 0.003 tr|B8A5B3|B8A5B3_DANRE Mediator of RNA polymerase II transcripti... 43 0.009 tr|Q4S3K4|Q4S3K4_TETNG Chromosome 1 SCAF14749, whole genome shot... 42 0.016 tr|B1H175|B1H175_XENTR Mediator complex subunit 19 OS=Xenopus tr... 41 0.027 tr|Q2LZ17|Q2LZ17_DROPS GA18960 OS=Drosophila pseudoobscura pseud... 40 0.046 tr|B4GZR6|B4GZR6_DROPE GL22742 OS=Drosophila persimilis GN=GL227... 40 0.046 tr|B3M3V0|B3M3V0_DROAN GF25231 OS=Drosophila ananassae GN=GF2523... 40 0.078
>tr|A9TTB7|A9TTB7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_171835 PE=4 SV=1 Length = 480
Score = 142 bits (358), Expect = 9e-33 Identities = 74/135 (54%), Positives = 98/135 (72%), Gaps = 7/135 (5%) Frame = -1
Query: 389 FRLITSAPRSRELTGAADLLSHYGLRELHEKFCQKPLPVSIGESNYLRNVVGDFDIRRGE 210 FRL+++APR+RELTGA DL+SHY LRE +E FC+KPL + +SNYL NVVGD ++RRGE Sbjct: 207 FRLLSAAPRTRELTGAVDLISHYQLREHYESFCKKPLSTKVSDSNYLSNVVGDTELRRGE 266
Query: 209 GMELGQLL-GP---DIEAGGVHIHPFDIDVLQQAFTLRESDSISLTEADRGVPTISC--- 51 GMEL QL+ GP + + V PFD++VL++AFTL+E+ I L E++RGVP Sbjct: 267 GMELSQLISGPAMTSMPSDRVPFQPFDLEVLRKAFTLKEAGPIFLPESERGVPVAKGDEE 326
Query: 50 KMKEEFKDKDRKHKK 6 K K+ KD+DR HKK Sbjct: 327 KKKKHKKDRDRHHKK 341
>tr|Q0ILX9|Q0ILX9_ORYSJ Os12g0614000 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os12g0614000 PE=4 SV=1 Length = 231
Score = 132 bits (332), Expect = 9e-30 Identities = 65/119 (54%), Positives = 88/119 (73%), Gaps = 1/119 (0%) Frame = -1
Query: 359 RELTGAADLLSHYGLRELHEKFCQKPLPVSIGESNYLRNVVGDFDIRRGEGMELGQLL-G 183 RELTGA DL+SHY L H+ FC+KPLP++I +++YL NVVGD +IR+GEGMEL QL+ Sbjct: 24 RELTGAVDLISHYKLLAHHDFFCKKPLPLAISDTHYLDNVVGDTEIRKGEGMELDQLVQN 83
Query: 182 PDIEAGGVHIHPFDIDVLQQAFTLRESDSISLTEADRGVPTISCKMKEEFKDKDRKHKK 6 + +I PFD++ L QAF LRE+ + L A++G+PTIS K+K E KDK++KHKK Sbjct: 84 AYLRDKPAYIQPFDMETLGQAFQLRETAPVDLPSAEKGIPTISGKLKSESKDKEKKHKK 142
>tr|B7EFD0|B7EFD0_ORYSJ cDNA clone:J013162A19, full insert sequence OS=Oryza sativa subsp. japonica PE=2 SV=1 Length = 220
Score = 132 bits (332), Expect = 9e-30 Identities = 65/119 (54%), Positives = 88/119 (73%), Gaps = 1/119 (0%) Frame = -1
Query: 359 RELTGAADLLSHYGLRELHEKFCQKPLPVSIGESNYLRNVVGDFDIRRGEGMELGQLL-G 183 RELTGA DL+SHY L H+ FC+KPLP++I +++YL NVVGD +IR+GEGMEL QL+ Sbjct: 13 RELTGAVDLISHYKLLAHHDFFCKKPLPLAISDTHYLDNVVGDTEIRKGEGMELDQLVQN 72
Query: 182 PDIEAGGVHIHPFDIDVLQQAFTLRESDSISLTEADRGVPTISCKMKEEFKDKDRKHKK 6 + +I PFD++ L QAF LRE+ + L A++G+PTIS K+K E KDK++KHKK Sbjct: 73 AYLRDKPAYIQPFDMETLGQAFQLRETAPVDLPSAEKGIPTISGKLKSESKDKEKKHKK 131
>tr|A3CJE7|A3CJE7_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_035419 PE=4 SV=1 Length = 835
Score = 132 bits (332), Expect = 9e-30 Identities = 65/119 (54%), Positives = 88/119 (73%), Gaps = 1/119 (0%) Frame = -1
Query: 359 RELTGAADLLSHYGLRELHEKFCQKPLPVSIGESNYLRNVVGDFDIRRGEGMELGQLL-G 183 RELTGA DL+SHY L H+ FC+KPLP++I +++YL NVVGD +IR+GEGMEL QL+ Sbjct: 624 RELTGAVDLISHYKLLAHHDFFCKKPLPLAISDTHYLDNVVGDTEIRKGEGMELDQLVQN 683
Query: 182 PDIEAGGVHIHPFDIDVLQQAFTLRESDSISLTEADRGVPTISCKMKEEFKDKDRKHKK 6 + +I PFD++ L QAF LRE+ + L A++G+PTIS K+K E KDK++KHKK Sbjct: 684 AYLRDKPAYIQPFDMETLGQAFQLRETAPVDLPSAEKGIPTISGKLKSESKDKEKKHKK 742
>tr|B8BN00|B8BN00_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_39104 PE=4 SV=1 Length = 220
Score = 130 bits (327), Expect = 3e-29 Identities = 64/119 (53%), Positives = 87/119 (73%), Gaps = 1/119 (0%) Frame = -1
Query: 359 RELTGAADLLSHYGLRELHEKFCQKPLPVSIGESNYLRNVVGDFDIRRGEGMELGQLL-G 183 RELTGA DL+SHY L H+ FC+KPLP++I +++YL NVVGD +IR+GEGMEL QL+ Sbjct: 13 RELTGAVDLISHYKLLAHHDFFCKKPLPLAISDTHYLHNVVGDTEIRKGEGMELDQLVQN 72
Query: 182 PDIEAGGVHIHPFDIDVLQQAFTLRESDSISLTEADRGVPTISCKMKEEFKDKDRKHKK 6 + +I PFD++ L QAF LRE+ + L A++G+PTIS K K E KDK+++HKK Sbjct: 73 AYLRDKPAYIQPFDMETLGQAFQLRETAPVDLPSAEKGIPTISGKPKSESKDKEKRHKK 131
>tr|A9RG55|A9RG55_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_158861 PE=4 SV=1 Length = 333
Score = 129 bits (325), Expect = 6e-29 Identities = 73/155 (47%), Positives = 101/155 (65%), Gaps = 5/155 (3%) Frame = -1
Query: 458 ALILQKLKAMATSGNRTDDSGGPFRLITSAPRSRELTGAADLLSHYGLRELHEKFCQKPL 279 + + Q MA++G+ FR++ APR RELTGA DL+SHY L+E E FC+KP Sbjct: 103 SFVSQSAAGMASNGDCF------FRMLAIAPRPRELTGAVDLVSHYQLKEQFEAFCKKPS 156
Query: 278 PVSIGESNYLRNVVGDFDIRRGEGMELGQLL----GPDIEAGGVHIHPFDIDVLQQAFTL 111 P S+ +S YL NVVGD + RRGEGMEL QL+ G + + V FDI++L++AF L Sbjct: 157 PTSVSDSMYLGNVVGDSEFRRGEGMELCQLVQGSAGSWMPSDRVPFQHFDIELLRRAFAL 216
Query: 110 RESDSISLTEADRGVPTISCKMKEEFKD-KDRKHK 9 +E+ I L E++RG+PTI K K++ +D K RKHK Sbjct: 217 KETGPIFLPESERGLPTIRVKSKDQDEDKKKRKHK 251
>tr|B6UCR9|B6UCR9_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 205
Score = 128 bits (322), Expect = 1e-28 Identities = 63/119 (52%), Positives = 86/119 (72%), Gaps = 1/119 (0%) Frame = -1
Query: 359 RELTGAADLLSHYGLRELHEKFCQKPLPVSIGESNYLRNVVGDFDIRRGEGMELGQLL-G 183 RELTGA DL+SHY L H+ FC+KPLP++I +++YL NVVGD +IR+GEGMEL QL+ Sbjct: 13 RELTGAVDLISHYKLLPHHDFFCKKPLPLAISDTHYLHNVVGDTEIRKGEGMELDQLVHN 72
Query: 182 PDIEAGGVHIHPFDIDVLQQAFTLRESDSISLTEADRGVPTISCKMKEEFKDKDRKHKK 6 + +I PFD++ L QAF LRE+ + L ++G+PTIS K K E KDK++KHK+ Sbjct: 73 AYLRDKPAYIQPFDMETLGQAFQLRETALVDLPSTEKGIPTISGKPKSESKDKEKKHKR 131
>tr|B4FGE9|B4FGE9_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 205
Score = 128 bits (322), Expect = 1e-28 Identities = 63/119 (52%), Positives = 86/119 (72%), Gaps = 1/119 (0%) Frame = -1
Query: 359 RELTGAADLLSHYGLRELHEKFCQKPLPVSIGESNYLRNVVGDFDIRRGEGMELGQLL-G 183 RELTGA DL+SHY L H+ FC+KPLP++I +++YL NVVGD +IR+GEGMEL QL+ Sbjct: 13 RELTGAVDLISHYKLLPHHDFFCKKPLPLAISDTHYLHNVVGDTEIRKGEGMELDQLVHN 72
Query: 182 PDIEAGGVHIHPFDIDVLQQAFTLRESDSISLTEADRGVPTISCKMKEEFKDKDRKHKK 6 + +I PFD++ L QAF LRE+ + L ++G+PTIS K K E KDK++KHK+ Sbjct: 73 AYLRDKPAYIQPFDMETLGQAFQLRETALVDLPSTEKGIPTISGKPKSESKDKEKKHKR 131
>tr|A9RTR5|A9RTR5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_160931 PE=4 SV=1 Length = 287
Score = 128 bits (321), Expect = 2e-28 Identities = 72/140 (51%), Positives = 93/140 (66%), Gaps = 5/140 (3%) Frame = -1
Query: 413 RTDDSGGPFRLITSAPRSRELTGAADLLSHYGLRELHEKFCQKPLPVSIGESNYLRNVVG 234 + + S G FR RSREL+G DL+SHY LRE E C+KPLP SI +S YL NVVG Sbjct: 38 KLETSCGHFR------RSRELSGTVDLISHYQLREPFEAICKKPLPTSISDSKYLSNVVG 91
Query: 233 DFDIRRGEGMELGQLL----GPDIEAGGVHIHPFDIDVLQQAFTLRESDSISLTEADRGV 66 D +IRRG+ MELGQL+ G + + V PFDI+VL++AF L+ES ISL E++RG+ Sbjct: 92 DSEIRRGDDMELGQLIQGPAGSSMPSDRVPFQPFDIEVLRRAFALKESGPISLPESERGL 151
Query: 65 PTISCKMK-EEFKDKDRKHK 9 P I K K ++ + K RKHK Sbjct: 152 PIIRSKSKHQDDEKKKRKHK 171
>tr|B4FUQ2|B4FUQ2_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 218
Score = 127 bits (319), Expect = 3e-28 Identities = 62/119 (52%), Positives = 86/119 (72%), Gaps = 1/119 (0%) Frame = -1
Query: 359 RELTGAADLLSHYGLRELHEKFCQKPLPVSIGESNYLRNVVGDFDIRRGEGMELGQLL-G 183 RELTGA DL++HY L H+ FC+KPLP++I +++YL N+VGD +IR+GEGMEL QL+ Sbjct: 13 RELTGAVDLINHYKLLPHHDFFCKKPLPLAISDTHYLHNIVGDTEIRKGEGMELDQLVQN 72
Query: 182 PDIEAGGVHIHPFDIDVLQQAFTLRESDSISLTEADRGVPTISCKMKEEFKDKDRKHKK 6 + +I PFD++ L QAF LRE+ + L ++G+PTIS K K E KDK++KHKK Sbjct: 73 AYMRDKPAYIQPFDMETLGQAFQLRETAPVVLPSTEKGIPTISGKPKSESKDKEKKHKK 131
|