BP912169
Clone id YMU001_000015_H06
Library
Length 535
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000015_H06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
TCCTCATGAATCATATCCCAAATACTTTTAGGAAATCAAATTTAAAGCAATGGCGGTATC
CATCCTGCTCTCACCGCTCTTCCAAAGTATAACTGCTATCTAGCTCCAACACTCCAGAAG
CTAAACTACGTGGCCGCAACACAATGATTGTAGAAAAGGGTGTGGATTTCACAGAAGTCC
CATCCTATGAGGTCGATTTCCTCAGGCAAAGACAAACCAAAAGAGTTAAGGTTGAGGACA
AATGACAAAAGACTTGGTTGATCACATTAAGCTATAGATAACACGAGAAGTTTGGCTCCT
AAAACCTGCACAATGCTGACTTGATAAAGCGCAACCCAGAAACATTAGGCGCCCAGTTGT
CCAAAAGCATCCATATGAGCCAAGAAGCCAACAGGCCAACTCCTACTTAGTTCAATGCCG
TCTAGGCTCTTTAGTGCTCCTTGCTACAGAGCCTCCTTGCTCTTGCCCAAAGCCACCATA
ACTCATCCCCTGATACCCCATATTCGCAGCAGGATAGAACCCTCCATATGCACCT
■■Homology search results ■■ -
sp_hit_id Q92F56
Definition sp|Q92F56|TILS_LISIN Bifunctional protein tilS/hprT OS=Listeria innocua
Align length 38
Score (bit) 31.2
E-value 3.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912169|Adiantum capillus-veneris mRNA, clone:
YMU001_000015_H06.
(535 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q92F56|TILS_LISIN Bifunctional protein tilS/hprT OS=Listeria ... 31 3.3
sp|P37472|HPRT_BACSU Hypoxanthine-guanine phosphoribosyltransfer... 30 9.5
sp|Q6CJ45|GAR1_KLULA H/ACA ribonucleoprotein complex subunit 1 O... 30 9.7

>sp|Q92F56|TILS_LISIN Bifunctional protein tilS/hprT OS=Listeria
innocua GN=tilS/hprT PE=3 SV=1
Length = 648

Score = 31.2 bits (69), Expect = 3.3
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +3

Query: 120 AKLRGRNTMIVEKGVDFTEVPSYEVDFLRQRQTKRVKV 233
A + GR+ +I+E +D SY VD ++ R+ K VK+
Sbjct: 556 ASVEGRDVLIIEDIIDSGRTLSYLVDLIKYRKAKSVKL 593


>sp|P37472|HPRT_BACSU Hypoxanthine-guanine phosphoribosyltransferase
OS=Bacillus subtilis GN=hprT PE=3 SV=1
Length = 180

Score = 29.6 bits (65), Expect = 9.5
Identities = 19/77 (24%), Positives = 36/77 (46%)
Frame = +3

Query: 3 LMNHIPNTFRKSNLKQWRYPSCSHRSSKV*LLSSSNTPEAKLRGRNTMIVEKGVDFTEVP 182
L+ HI + Y + + S +V ++ +T + GR+ +I+E +D
Sbjct: 52 LIKHIDTYLEMDFMDVSSYGNSTVSSGEVKIIKDLDT---SVEGRDILIIEDIIDSGLTL 108

Query: 183 SYEVDFLRQRQTKRVKV 233
SY V+ R R+ K +K+
Sbjct: 109 SYLVELFRYRKAKSIKI 125


>sp|Q6CJ45|GAR1_KLULA H/ACA ribonucleoprotein complex subunit 1
OS=Kluyveromyces lactis GN=GAR1 PE=3 SV=1
Length = 219

Score = 29.6 bits (65), Expect = 9.7
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -2

Query: 534 GAYGGFYPAANMGYQGMSYGGFGQEQGGS 448
G GGF + G +G S GGFG +GGS
Sbjct: 181 GGRGGFSGGSRGGSRGGSRGGFGGSRGGS 209


tr_hit_id A8IBY2
Definition tr|A8IBY2|A8IBY2_CHLRE Predicted protein (Fragment) OS=Chlamydomonas reinhardtii
Align length 37
Score (bit) 33.5
E-value 7.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912169|Adiantum capillus-veneris mRNA, clone:
YMU001_000015_H06.
(535 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A8IBY2|A8IBY2_CHLRE Predicted protein (Fragment) OS=Chlamydom... 33 7.2

>tr|A8IBY2|A8IBY2_CHLRE Predicted protein (Fragment)
OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_111269 PE=4
SV=1
Length = 600

Score = 33.5 bits (75), Expect = 7.2
Identities = 18/37 (48%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Frame = -2

Query: 534 GAYGGFYPAANMGYQGMSY-----GGFGQEQGGSVAR 439
G YGG Y A GY G Y GGFG E+GG R
Sbjct: 62 GGYGGGYGAPRGGYGGGGYGGGGRGGFGGERGGYAGR 98