NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912174
Clone id YMU001_000016_A01
Library
Length 467
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000016_A01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CAGTGAGATACCACTCTAGAAGAACTAGAATTCTAACCTTGTGTCAAGAATTACGGACCA
AGAGACAGTCCCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAGAGTAACGGAGG
CGCGCAAAGGTTTCCTCAGGCTGGACGGAAATCAGCCTACGAGTGCAAAGGCAGAAGGGA
GCTTGACTGCGAGACCTACCAGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG
TTCCAAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATAACAGGCTGAT
CTTCCCCAAGAGTTCACATCGACGGGAAGGTTTGGCACCTCGATGTCGGCTCTTCGCCAC
CTGTGGCGGTAGTACGTCCCAAGGGTTGGGCTGTTCGCCCATTAAAGCGGTACGTGAGCT
GGGTTCAGAACGTCGTGAGACAGTTCGGTCCATATCCGGTGCGGGCG
■■Homology search results ■■ -
sp_hit_id Q9PLI5
Definition sp|Q9PLI5|Y114_CHLMU Uncharacterized protein TC_0114 OS=Chlamydia muridarum
Align length 79
Score (bit) 89.7
E-value 6.0e-18
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912174|Adiantum capillus-veneris mRNA, clone:
YMU001_000016_A01.
         (467 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9PLI5|Y114_CHLMU Uncharacterized protein TC_0114 OS=Chlamydi...    90   6e-18
sp|P70906|VLP18_BORHE Variable large protein 18 OS=Borrelia herm...    33   0.62 
sp|Q4U0G1|CLAP1_XENLA CLIP-associating protein 1 OS=Xenopus laev...    31   3.1  
sp|A0PT76|LEXA_MYCUA LexA repressor OS=Mycobacterium ulcerans (s...    30   4.0  
sp|A0LUZ1|LEXA_ACIC1 LexA repressor OS=Acidothermus cellulolytic...    30   5.2  
sp|Q5SZD1|CF141_HUMAN Uncharacterized protein C6orf141 OS=Homo s...    30   5.2  
sp|O69979|LEXA_STRCO LexA repressor OS=Streptomyces coelicolor G...    29   8.9  
sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1...    29   8.9  

>sp|Q9PLI5|Y114_CHLMU Uncharacterized protein TC_0114 OS=Chlamydia
           muridarum GN=TC_0114 PE=4 SV=2
          Length = 122

 Score = 89.7 bits (221), Expect = 6e-18
 Identities = 45/79 (56%), Positives = 49/79 (62%)
 Frame = -3

Query: 465 PAPDMDRTVSRRSEPSSRTALMGEQPNPWDVLPPQVAKSRHRGAKPSRRCXXXXXXXXXX 286
           P  D D+TVSRR EPSSRTAL+GEQPNPWD+L PQ A SRHRGAKP RR           
Sbjct: 44  PTKDRDQTVSRRFEPSSRTALIGEQPNPWDLLQPQDAMSRHRGAKPPRRYELLVAISLLS 103

Query: 285 XXXXXXXERRPFHLEPSDH 229
                  +RR FH  P DH
Sbjct: 104 PEYLLSVKRRRFHFPPPDH 122


>sp|P70906|VLP18_BORHE Variable large protein 18 OS=Borrelia hermsii
           GN=vlp18 PE=3 SV=1
          Length = 360

 Score = 33.1 bits (74), Expect = 0.62
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +3

Query: 144 DGNQPTSAKAEGSLTARPTSRAGTKVGLSDPTVPSGRAVA 263
           +G+Q   A A+G+ TA   ++ GTK  LS+   P   AVA
Sbjct: 250 EGDQALGAAADGTTTAMSFAKGGTKDNLSNANTPKAAAVA 289


>sp|Q4U0G1|CLAP1_XENLA CLIP-associating protein 1 OS=Xenopus laevis
           GN=clasp1 PE=2 SV=1
          Length = 1468

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 141 LDGNQPTSAKAEGSLTARPTSRAGTKVGLSDPTVPSGRA 257
           +DGN+P+SA +  S  A  T+R G  +G +    PS  A
Sbjct: 247 VDGNRPSSASSSASSKAPQTARRGVSLGTARRPGPSSAA 285


>sp|A0PT76|LEXA_MYCUA LexA repressor OS=Mycobacterium ulcerans
           (strain Agy99) GN=lexA PE=3 SV=1
          Length = 244

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +3

Query: 99  ASQRVTEARKGFLRLDGNQPTSAKAEG---SLTARPTSRAGTKVGLSDPT 239
           A Q  T  RKG+LR D N+P +    G   ++TA P +       L +PT
Sbjct: 74  AHQLRTLERKGYLRRDPNRPRAVDVRGADDTVTAAPVTDVAGSDALPEPT 123


>sp|A0LUZ1|LEXA_ACIC1 LexA repressor OS=Acidothermus cellulolyticus
           (strain ATCC 43068 / 11B) GN=lexA PE=3 SV=1
          Length = 275

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +3

Query: 99  ASQRVTEARKGFLRLDGNQPTSAKAEGSLTARPTSRAG 212
           A Q +   RKGFLR D N+P + +   + +A P + AG
Sbjct: 89  AHQLMVLQRKGFLRRDPNRPRAVEIRSAESAVPDASAG 126


>sp|Q5SZD1|CF141_HUMAN Uncharacterized protein C6orf141 OS=Homo
           sapiens GN=C6orf141 PE=2 SV=2
          Length = 244

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 23/57 (40%), Positives = 25/57 (43%)
 Frame = +2

Query: 269 DKSYSRDNRLIFPKSSHRREGLAPRCRLFATCGGSTSQGLGCSPIKAVRELGSERRE 439
           D S S  +   FP+   R   LAP  R  AT G S SQG G     A R LG    E
Sbjct: 21  DSSRSLGDLGPFPREVGRGAPLAPGARNPATAGASRSQGGGHEDRTADRALGPRAGE 77


>sp|O69979|LEXA_STRCO LexA repressor OS=Streptomyces coelicolor
           GN=lexA PE=3 SV=1
          Length = 234

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = +3

Query: 99  ASQRVTEARKGFLRLDGNQPTSAKAEGS---LTARPTSRAGTKVGLSDPTVPSGRAVA 263
           A Q +   RKGFLR D ++P + +  GS    + +PT  AG       P V  GR  A
Sbjct: 68  AHQLMALERKGFLRRDPHRPRAYEVRGSDQAASVQPTDTAGKPAASYVPLV--GRIAA 123


>sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1
            OS=Homo sapiens GN=HERC1 PE=1 SV=1
          Length = 4861

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 129  LCAPPLLFGRPTPHRNCLPGTVSWS 55
            LC PP+    P  H+NCLP   SW+
Sbjct: 3900 LCNPPV----PPHHQNCLPDPASWN 3920
tr_hit_id Q4EE25
Definition tr|Q4EE25|Q4EE25_LISMO Putative uncharacterized protein OS=Listeria monocytogenes str. 4b H7858
Align length 109
Score (bit) 179.0
E-value 8.0e-44
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912174|Adiantum capillus-veneris mRNA, clone:
YMU001_000016_A01.
         (467 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4EE25|Q4EE25_LISMO Putative uncharacterized protein OS=Liste...   179   8e-44
tr|A5ZQM3|A5ZQM3_9FIRM Putative uncharacterized protein OS=Rumin...   179   8e-44
tr|Q848W1|Q848W1_BACME Putative uncharacterized protein OS=Bacil...   161   1e-38
tr|A5ZYK8|A5ZYK8_9FIRM Putative uncharacterized protein OS=Rumin...   157   3e-37
tr|A0Q208|A0Q208_CLONN Putative uncharacterized protein OS=Clost...   148   1e-34
tr|A0PXN7|A0PXN7_CLONN Putative uncharacterized protein OS=Clost...   148   1e-34
tr|B1BEF3|B1BEF3_CLOBO Putative uncharacterized protein (Fragmen...   148   1e-34
tr|B1BEE0|B1BEE0_CLOBO Putative uncharacterized protein OS=Clost...   148   1e-34
tr|B1BE06|B1BE06_CLOBO Putative uncharacterized protein OS=Clost...   148   1e-34
tr|B1QFN6|B1QFN6_CLOBO Putative uncharacterized protein OS=Clost...   144   2e-33
tr|B1QFL7|B1QFL7_CLOBO Putative uncharacterized protein (Fragmen...   144   2e-33
tr|B1RTR7|B1RTR7_CLOPE Putative uncharacterized protein OS=Clost...   144   2e-33
tr|B1RKU9|B1RKU9_CLOPE Putative uncharacterized protein OS=Clost...   144   2e-33
tr|B1RCB4|B1RCB4_CLOPE Putative uncharacterized protein OS=Clost...   144   2e-33
tr|B1BTI8|B1BTI8_CLOPE Putative uncharacterized protein OS=Clost...   144   2e-33
tr|B1BLN6|B1BLN6_CLOPE Putative uncharacterized protein OS=Clost...   144   2e-33
tr|B1BEX7|B1BEX7_CLOPE Putative uncharacterized protein OS=Clost...   144   2e-33
tr|B6G1S6|B6G1S6_9CLOT Putative uncharacterized protein OS=Clost...   143   5e-33
tr|Q877Q8|Q877Q8_CLOTE Putative uncharacterized protein OS=Clost...   141   2e-32
tr|A7DZU9|A7DZU9_CLOSP Hypothetical CTC00065-like protein OS=Clo...   141   2e-32
tr|B1C1N3|B1C1N3_9FIRM Putative uncharacterized protein OS=Clost...   139   5e-32
tr|A8R9P5|A8R9P5_9FIRM Putative uncharacterized protein OS=Eubac...   135   1e-30
tr|B2E6W4|B2E6W4_STRPN Putative uncharacterized protein OS=Strep...   134   3e-30
tr|B5HM15|B5HM15_9ACTO Putative uncharacterized protein OS=Strep...   133   5e-30
tr|B5G7E4|B5G7E4_9ACTO Putative uncharacterized protein OS=Strep...   133   5e-30
tr|B4V362|B4V362_9ACTO Putative uncharacterized protein OS=Strep...   131   2e-29
tr|Q8CQV6|Q8CQV6_STAES Putative uncharacterized protein OS=Staph...   130   3e-29
tr|B0A9C5|B0A9C5_9CLOT Putative uncharacterized protein OS=Clost...   127   4e-28
tr|B0A7G5|B0A7G5_9CLOT Putative uncharacterized protein OS=Clost...   127   4e-28
tr|A5Z309|A5Z309_9FIRM Putative uncharacterized protein OS=Eubac...   125   1e-27

>tr|Q4EE25|Q4EE25_LISMO Putative uncharacterized protein OS=Listeria
           monocytogenes str. 4b H7858 GN=LMOh7858_1903 PE=4 SV=1
          Length = 112

 Score =  179 bits (453), Expect = 8e-44
 Identities = 88/109 (80%), Positives = 93/109 (85%)
 Frame = +3

Query: 141 LDGNQPTSAKAEGSLTARPTSRAGTKVGLSDPTVPSGRAVAQRIKVTLGITG*SSPRVHI 320
           +DGN   S KA+GSLTAR TSRAGTKVGLSDP VP GRA+AQRIK T GITG S PRVHI
Sbjct: 1   MDGNHSQSVKAQGSLTARLTSRAGTKVGLSDPVVPHGRAIAQRIKATPGITGLSPPRVHI 60

Query: 321 DGKVWHLDVGSSPPVAVVRPKGWAVRPLKRYVSWVQNVVRQFGPYPVRA 467
           DG+VWHLDVGSS P AVV PKGWAVRPLKR+ SWVQNVVRQFGPYP RA
Sbjct: 61  DGEVWHLDVGSSHPGAVVGPKGWAVRPLKRHASWVQNVVRQFGPYPSRA 109


>tr|A5ZQM3|A5ZQM3_9FIRM Putative uncharacterized protein
           OS=Ruminococcus obeum ATCC 29174 GN=RUMOBE_01295 PE=4
           SV=1
          Length = 109

 Score =  179 bits (453), Expect = 8e-44
 Identities = 89/109 (81%), Positives = 91/109 (83%)
 Frame = +3

Query: 141 LDGNQPTSAKAEGSLTARPTSRAGTKVGLSDPTVPSGRAVAQRIKVTLGITG*SSPRVHI 320
           +DGN P SAKAEGSLTA PT  AGTKVGLSDP V SG A+AQRIK TLGITG S PRVHI
Sbjct: 1   MDGNHPKSAKAEGSLTATPTGGAGTKVGLSDPVVLSGNAIAQRIKATLGITGLSLPRVHI 60

Query: 321 DGKVWHLDVGSSPPVAVVRPKGWAVRPLKRYVSWVQNVVRQFGPYPVRA 467
           DG VWHLDVGSS P AVV PKGWAVRPLKRY SWVQNVVRQFGPYP  A
Sbjct: 61  DGVVWHLDVGSSHPGAVVGPKGWAVRPLKRYASWVQNVVRQFGPYPAWA 109


>tr|Q848W1|Q848W1_BACME Putative uncharacterized protein OS=Bacillus
           megaterium PE=4 SV=1
          Length = 95

 Score =  161 bits (408), Expect = 1e-38
 Identities = 78/92 (84%), Positives = 81/92 (88%)
 Frame = +3

Query: 183 LTARPTSRAGTKVGLSDPTVPSGRAVAQRIKVTLGITG*SSPRVHIDGKVWHLDVGSSPP 362
           +TAR TSRAGTKVGLSDP VP GRA+AQRIK T GITG S PRVHIDG+VWHLDVGSS P
Sbjct: 1   MTARTTSRAGTKVGLSDPVVPHGRAIAQRIKATPGITGLSPPRVHIDGEVWHLDVGSSHP 60

Query: 363 VAVVRPKGWAVRPLKRYVSWVQNVVRQFGPYP 458
            AVV PKGWAVRPLKRY SWVQNVVRQFGPYP
Sbjct: 61  GAVVGPKGWAVRPLKRYASWVQNVVRQFGPYP 92


>tr|A5ZYK8|A5ZYK8_9FIRM Putative uncharacterized protein
           OS=Ruminococcus obeum ATCC 29174 GN=RUMOBE_04125 PE=4
           SV=1
          Length = 108

 Score =  157 bits (397), Expect = 3e-37
 Identities = 79/100 (79%), Positives = 82/100 (82%)
 Frame = +3

Query: 168 KAEGSLTARPTSRAGTKVGLSDPTVPSGRAVAQRIKVTLGITG*SSPRVHIDGKVWHLDV 347
           ++ GSLTA PT  AGTKVGLSDP V SG A+AQRIK TLGITG S PRVHIDG VWHLDV
Sbjct: 9   QSRGSLTATPTGGAGTKVGLSDPVVLSGNAIAQRIKATLGITGLSLPRVHIDGVVWHLDV 68

Query: 348 GSSPPVAVVRPKGWAVRPLKRYVSWVQNVVRQFGPYPVRA 467
           GSS P AVV  KGWAVRPLKRY SWVQNVVRQFGPYP  A
Sbjct: 69  GSSHPGAVVGLKGWAVRPLKRYASWVQNVVRQFGPYPAWA 108


>tr|A0Q208|A0Q208_CLONN Putative uncharacterized protein
           OS=Clostridium novyi (strain NT) GN=NT01CX_0152 PE=4
           SV=1
          Length = 213

 Score =  148 bits (374), Expect = 1e-34
 Identities = 72/98 (73%), Positives = 78/98 (79%)
 Frame = -1

Query: 356 RRADIEVPNLPVDVNSWGRSACYP*SNFYPLSDGPSTWNRRITKADFRPCSTGRSRSQAP 177
           RRADIEVPNLPVDV+SWGRSACYP  +FYPLSDGPS  N RITK DFRPCST   RSQAP
Sbjct: 2   RRADIEVPNLPVDVDSWGRSACYPRGSFYPLSDGPSIQNHRITKPDFRPCSTCMCRSQAP 61

Query: 176 FCLCTRRLISVQPEETFARLRYSLGGLRPIETVYLGLS 63
           FCLCT R IS + E TF RLRY LGG RP +T +L +S
Sbjct: 62  FCLCTLRAISDRAEGTFGRLRYLLGGDRPSQTAHLAMS 99


>tr|A0PXN7|A0PXN7_CLONN Putative uncharacterized protein
           OS=Clostridium novyi (strain NT) GN=NT01CX_0251 PE=4
           SV=1
          Length = 213

 Score =  148 bits (374), Expect = 1e-34
 Identities = 72/98 (73%), Positives = 78/98 (79%)
 Frame = -1

Query: 356 RRADIEVPNLPVDVNSWGRSACYP*SNFYPLSDGPSTWNRRITKADFRPCSTGRSRSQAP 177
           RRADIEVPNLPVDV+SWGRSACYP  +FYPLSDGPS  N RITK DFRPCST   RSQAP
Sbjct: 2   RRADIEVPNLPVDVDSWGRSACYPRGSFYPLSDGPSIQNHRITKPDFRPCSTCMCRSQAP 61

Query: 176 FCLCTRRLISVQPEETFARLRYSLGGLRPIETVYLGLS 63
           FCLCT R IS + E TF RLRY LGG RP +T +L +S
Sbjct: 62  FCLCTLRAISDRAEGTFGRLRYLLGGDRPSQTAHLAMS 99


>tr|B1BEF3|B1BEF3_CLOBO Putative uncharacterized protein (Fragment)
           OS=Clostridium botulinum C str. Eklund GN=CBC_A1887 PE=4
           SV=1
          Length = 107

 Score =  148 bits (374), Expect = 1e-34
 Identities = 72/98 (73%), Positives = 78/98 (79%)
 Frame = -1

Query: 356 RRADIEVPNLPVDVNSWGRSACYP*SNFYPLSDGPSTWNRRITKADFRPCSTGRSRSQAP 177
           RRADIEVPNLPVDV+SWGRSACYP  +FYPLSDGPS  N RITK DFRPCST   RSQAP
Sbjct: 2   RRADIEVPNLPVDVDSWGRSACYPRGSFYPLSDGPSIQNHRITKPDFRPCSTCMCRSQAP 61

Query: 176 FCLCTRRLISVQPEETFARLRYSLGGLRPIETVYLGLS 63
           FCLCT R IS + E TF RLRY LGG RP +T +L +S
Sbjct: 62  FCLCTLRAISDRAEGTFGRLRYLLGGDRPSQTAHLAMS 99


>tr|B1BEE0|B1BEE0_CLOBO Putative uncharacterized protein
           OS=Clostridium botulinum C str. Eklund GN=CBC_A1890 PE=4
           SV=1
          Length = 210

 Score =  148 bits (374), Expect = 1e-34
 Identities = 72/98 (73%), Positives = 78/98 (79%)
 Frame = -1

Query: 356 RRADIEVPNLPVDVNSWGRSACYP*SNFYPLSDGPSTWNRRITKADFRPCSTGRSRSQAP 177
           RRADIEVPNLPVDV+SWGRSACYP  +FYPLSDGPS  N RITK DFRPCST   RSQAP
Sbjct: 2   RRADIEVPNLPVDVDSWGRSACYPRGSFYPLSDGPSIQNHRITKPDFRPCSTCMCRSQAP 61

Query: 176 FCLCTRRLISVQPEETFARLRYSLGGLRPIETVYLGLS 63
           FCLCT R IS + E TF RLRY LGG RP +T +L +S
Sbjct: 62  FCLCTLRAISDRAEGTFGRLRYLLGGDRPSQTAHLAMS 99


>tr|B1BE06|B1BE06_CLOBO Putative uncharacterized protein
           OS=Clostridium botulinum C str. Eklund GN=CBC_0392 PE=4
           SV=1
          Length = 213

 Score =  148 bits (374), Expect = 1e-34
 Identities = 72/98 (73%), Positives = 78/98 (79%)
 Frame = -1

Query: 356 RRADIEVPNLPVDVNSWGRSACYP*SNFYPLSDGPSTWNRRITKADFRPCSTGRSRSQAP 177
           RRADIEVPNLPVDV+SWGRSACYP  +FYPLSDGPS  N RITK DFRPCST   RSQAP
Sbjct: 2   RRADIEVPNLPVDVDSWGRSACYPRGSFYPLSDGPSIQNHRITKPDFRPCSTCMCRSQAP 61

Query: 176 FCLCTRRLISVQPEETFARLRYSLGGLRPIETVYLGLS 63
           FCLCT R IS + E TF RLRY LGG RP +T +L +S
Sbjct: 62  FCLCTLRAISDRAEGTFGRLRYLLGGDRPSQTAHLAMS 99


>tr|B1QFN6|B1QFN6_CLOBO Putative uncharacterized protein
           OS=Clostridium botulinum NCTC 2916 GN=CBN_0042 PE=4 SV=1
          Length = 218

 Score =  144 bits (364), Expect = 2e-33
 Identities = 71/98 (72%), Positives = 77/98 (78%)
 Frame = -1

Query: 356 RRADIEVPNLPVDVNSWGRSACYP*SNFYPLSDGPSTWNRRITKADFRPCSTGRSRSQAP 177
           RRADIEVPNLPVDV+SWGRSACYP  +FYPLSDGP T   RITK DFRPCST   RSQAP
Sbjct: 2   RRADIEVPNLPVDVDSWGRSACYPRGSFYPLSDGPPTRYHRITKPDFRPCSTCMCRSQAP 61

Query: 176 FCLCTRRLISVQPEETFARLRYSLGGLRPIETVYLGLS 63
           FCLCT R IS + E TF RLRY LGG RP +T +L +S
Sbjct: 62  FCLCTLRAISDRAEGTFGRLRYFLGGDRPSQTAHLTMS 99