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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912180
Clone id YMU001_000016_A12
Library
Length 558
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000016_A12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CGACGTTGAGTCTGCTCGGGTAGAACGCGTTTTCGACAGTTTTTGGGAGCGTGCACGTGT
TGCTCTCCTCCTGTTTTAGCCACCGCTCTTCTTCTGTTGAGCGAAGAGAAAGCTTCATGT
TTTTGCCATTCGAGTTGTAGGTTAGGCTCCTGTATATCTGTGTTTGAACTCTTTTAAGAA
GGCGTTCTCTTCTTCGATAGTAATCAGAGCTTCCTCTTGAAGGTAGCTTTCTGCTATTTC
GGAGGTGAAGGAAAACCCACTTTGGGCAGTAGGGAACCCACTTCTCTGGTTTGGAGAGAA
ACCATCACAAGACGTTCTGGTGATAGAGGGACTTTCTGGTGGTGTATAGGGAGAAATTTG
GAATCTTTGCTTCATTTTGTAAGGTCTGAGCAGACGGGGAAGCACATCTCTGTCCGTTAG
GATTGAGAGAGGGATCCATTCAGCTCCACTTAACTATGCGCACTGAGTTGCAGCAGCAAC
AGCATCACCGACGGGGTCTGAGCTTAAGCAGTGCAGTTGCCAGTGACAGGGATGACGATC
TCACTCTCTTTAGAGATA
■■Homology search results ■■ -
sp_hit_id Q6BL34
Definition sp|Q6BL34|DBP10_DEBHA ATP-dependent RNA helicase DBP10 OS=Debaryomyces hansenii
Align length 51
Score (bit) 31.6
E-value 2.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912180|Adiantum capillus-veneris mRNA, clone:
YMU001_000016_A12.
         (558 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6BL34|DBP10_DEBHA ATP-dependent RNA helicase DBP10 OS=Debary...    32   2.7  
sp|Q6G0K6|SYI_BARQU Isoleucyl-tRNA synthetase OS=Bartonella quin...    31   4.7  
sp|A7E6F5|ATG2_SCLS1 Autophagy-related protein 2 OS=Sclerotinia ...    30   6.2  
sp|P53552|THO2_YEAST THO complex subunit 2 OS=Saccharomyces cere...    30   8.0  
sp|Q2YTF7|ISDH_STAAB Iron-regulated surface determinant protein ...    30   8.0  
sp|Q9CKC8|ZIPA_PASMU Cell division protein zipA homolog OS=Paste...    30   8.1  
sp|P12689|REV1_YEAST DNA repair protein REV1 OS=Saccharomyces ce...    30   8.1  
sp|Q2M2I3|FA83E_HUMAN Protein FAM83E OS=Homo sapiens GN=FAM83E P...    30   8.1  

>sp|Q6BL34|DBP10_DEBHA ATP-dependent RNA helicase DBP10
            OS=Debaryomyces hansenii GN=DBP10 PE=3 SV=2
          Length = 932

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 19/51 (37%), Positives = 31/51 (60%)
 Frame = -3

Query: 235  SRKLPSRGSSDYYRRRERLLKRVQTQIYRSLTYNSNGKNMKLSLRSTEEER 83
            S KLP +   DY++++E++ K V + + +   YN  G+  K  LRSTE+ R
Sbjct: 864  SPKLPDKFRDDYHKQKEKVKKAVDSGL-KVKGYNKPGQ--KQELRSTEDIR 911


>sp|Q6G0K6|SYI_BARQU Isoleucyl-tRNA synthetase OS=Bartonella quintana
            GN=ileS PE=3 SV=1
          Length = 971

 Score = 30.8 bits (68), Expect = 4.7
 Identities = 15/63 (23%), Positives = 30/63 (47%)
 Frame = -3

Query: 286  EKWVPYCPKWVFLHLRNSRKLPSRGSSDYYRRRERLLKRVQTQIYRSLTYNSNGKNMKLS 107
            E W+ + PK   +HL   R +P    + +   R R +++V+  +  +L +    K +  S
Sbjct: 812  EAWLEHSPKSHSVHLEQFRSVPGEWQNGFLAERWRKVRQVRKVVTGALEFERAAKRIGSS 871

Query: 106  LRS 98
            L +
Sbjct: 872  LEA 874


>sp|A7E6F5|ATG2_SCLS1 Autophagy-related protein 2 OS=Sclerotinia
            sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=atg2
            PE=3 SV=1
          Length = 2159

 Score = 30.4 bits (67), Expect = 6.2
 Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
 Frame = -1

Query: 435  IPLSILTDRDVLPRLLRPYKMKQRFQISPYTPPESPSITRTSCDG------FSPNQRSGF 274
            +PL +  D+D L  + R ++ K+   + P  P E P + R   +       F P +R  +
Sbjct: 1849 LPLRLHVDQDALDFITRFFEFKEESDVIPGAPSEEPFLQRVEVNSVQVKLDFKP-KRVDY 1907

Query: 273  PTAQSGFSFTSEIAESYLQEEALITI 196
               +SG   T+E     + +EA +T+
Sbjct: 1908 AGLRSG--HTTEFMNFLILDEADMTL 1931


>sp|P53552|THO2_YEAST THO complex subunit 2 OS=Saccharomyces
            cerevisiae GN=THO2 PE=1 SV=1
          Length = 1597

 Score = 30.0 bits (66), Expect = 8.0
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = -3

Query: 199  YRRRERLLKRVQTQIYRSLTYNSNGKNMKLSLRSTEEERWLKQEESNTCTLPKTVENAFY 20
            +++ E +  + QTQ YR      N ++   + R+ E +R+    +SNT  LP+  +   Y
Sbjct: 1538 FKKDETIRNKFQTQDYR------NTRDSGAAHRANENQRYNGNRKSNTQALPQGPKGGNY 1591

Query: 19   PSR 11
             SR
Sbjct: 1592 VSR 1594


>sp|Q2YTF7|ISDH_STAAB Iron-regulated surface determinant protein H
           OS=Staphylococcus aureus (strain bovine RF122 / ET3-1)
           GN=isdH PE=1 SV=2
          Length = 893

 Score = 30.0 bits (66), Expect = 8.0
 Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
 Frame = -3

Query: 229 KLPSRGSSDYYRRRERLLKRVQTQIYRSLTYNSNGKNMKLSLRSTEEERWL--KQEESNT 56
           KLP +  ++Y ++ ++    +  Q+  ++T   N       L   +E  ++  + EE+N 
Sbjct: 503 KLPEKYKAEYKKKLDQTRVELADQVKSAVTEFENVTPTNDQLTDVQEAHFVVFESEENNE 562

Query: 55  CTLPKTVENAFYPSRLN 5
             +   VE+ FY + LN
Sbjct: 563 SVMDGFVEHPFYTATLN 579


>sp|Q9CKC8|ZIPA_PASMU Cell division protein zipA homolog
           OS=Pasteurella multocida GN=zipA PE=3 SV=1
          Length = 323

 Score = 30.0 bits (66), Expect = 8.1
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
 Frame = -1

Query: 402 LPRLLRPYKMKQRFQISPYTPPESPSITRTSCDGFSPNQRSGFPTAQSGFSFTSEIAESY 223
           LP+  +PY+ K    I P TPP SP++T  +      NQ  G  T         ++A+  
Sbjct: 105 LPKEEQPYQAK----IEPDTPPTSPALTTIAEVENYANQEEGIDTHSE--QLRQQLADLA 158

Query: 222 LQEEA--LITIEEENAFLK 172
            Q  +  L  ++EE A ++
Sbjct: 159 QQSPSVTLAALQEEQALME 177


>sp|P12689|REV1_YEAST DNA repair protein REV1 OS=Saccharomyces
           cerevisiae GN=REV1 PE=1 SV=2
          Length = 985

 Score = 30.0 bits (66), Expect = 8.1
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -1

Query: 378 KMKQRFQISPYTPPESPSITRTSCDGFSPNQRSGFPTAQSGFSFT 244
           K+ +R + +P  PP+   + R  CD FS + R G PT + G   T
Sbjct: 667 KLMRRCKDAPIEPPKYMGMGR--CDSFSRSSRLGIPTNEFGIIAT 709


>sp|Q2M2I3|FA83E_HUMAN Protein FAM83E OS=Homo sapiens GN=FAM83E PE=2
           SV=1
          Length = 478

 Score = 30.0 bits (66), Expect = 8.1
 Identities = 33/129 (25%), Positives = 50/129 (38%), Gaps = 13/129 (10%)
 Frame = -1

Query: 486 DAVAAATQCA*LSGAEWIPLSILTDRDVLPRLLRPYKMKQRFQISPYTPPESPSITRTSC 307
           D V AAT+        W+P+ +L DR  LP  L   ++ Q+  ++P+            C
Sbjct: 172 DLVDAATR-------RWVPVYLLLDRQQLPAFL---ELAQQLGVNPWNTENVDVRVVRGC 221

Query: 306 DGFSPNQRSGFPTAQSGF-------------SFTSEIAESYLQEEALITIEEENAFLKEF 166
              S  +R    T +  F             SFT   A  +     L+T E  +AF  EF
Sbjct: 222 SFQSRWRRQVSGTVREKFVLLDGERVISGSYSFTWSDARLHRGLVTLLTGEIVDAFSLEF 281

Query: 165 KHRYTGA*P 139
           +  Y  + P
Sbjct: 282 RTLYAASCP 290
tr_hit_id Q0V3G9
Definition tr|Q0V3G9|Q0V3G9_PHANO Putative uncharacterized protein OS=Phaeosphaeria nodorum
Align length 54
Score (bit) 35.4
E-value 2.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912180|Adiantum capillus-veneris mRNA, clone:
YMU001_000016_A12.
         (558 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q0V3G9|Q0V3G9_PHANO Putative uncharacterized protein OS=Phaeo...    35   2.1  
tr|Q8IC29|Q8IC29_PLAF7 Putative uncharacterized protein MAL7P1.1...    35   2.7  
tr|B8NR51|B8NR51_ASPFL Putative uncharacterized protein OS=Asper...    35   2.7  
tr|B0C3K4|B0C3K4_ACAM1 Putative uncharacterized protein OS=Acary...    34   4.7  
tr|Q6DN95|Q6DN95_9SACH RNA polymerase subunit II-2 (Fragment) OS...    34   4.7  
tr|A5DVP4|A5DVP4_LODEL DNA-directed RNA polymerase OS=Lodderomyc...    34   4.7  
tr|A5C9C7|A5C9C7_VITVI Putative uncharacterized protein OS=Vitis...    33   7.9  
tr|Q9Y133|Q9Y133_DROME Metabotropic GABA-B receptor subtype 2, i...    33   7.9  
tr|Q9BML6|Q9BML6_DROME Metabotropic GABA-B receptor subtype 2 OS...    33   7.9  
tr|Q8IN24|Q8IN24_DROME Metabotropic GABA-B receptor subtype 2, i...    33   7.9  
tr|Q7RKF6|Q7RKF6_PLAYO Chloroquine resistance marker protein, pu...    33   7.9  

>tr|Q0V3G9|Q0V3G9_PHANO Putative uncharacterized protein
           OS=Phaeosphaeria nodorum GN=SNOG_01445 PE=4 SV=2
          Length = 694

 Score = 35.4 bits (80), Expect = 2.1
 Identities = 23/54 (42%), Positives = 28/54 (51%), Gaps = 10/54 (18%)
 Frame = -1

Query: 357 ISPYTPPESPSITRTSCD----GFSPNQRSGFPT------AQSGFSFTSEIAES 226
           +SP TPP SPS T++       G SP +    PT       Q+GF FT EI ES
Sbjct: 1   MSPATPPRSPSPTKSRSSPPKRGDSPTKGRDSPTKLKLEVGQNGFHFTCEIPES 54


>tr|Q8IC29|Q8IC29_PLAF7 Putative uncharacterized protein MAL7P1.17
           OS=Plasmodium falciparum (isolate 3D7) GN=MAL7P1.17 PE=4
           SV=1
          Length = 3535

 Score = 35.0 bits (79), Expect = 2.7
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
 Frame = -3

Query: 256 VFLHLRNSRKLPSRGSSDYYRRRERLLKR-VQTQIYRSLTYNSNGKNMKLSLRSTEEERW 80
           +F H+  S  +  + +   Y ++E LLKR    QIY    YN + K++K +         
Sbjct: 580 MFKHILLSAVIKYKHTQKVYTKQELLLKRKANKQIYEQKYYNESNKSIKSN--------- 630

Query: 79  LKQEESNTCTLPKTVENAFY 20
            K+ +SN C   K V+   Y
Sbjct: 631 -KRNKSNKCKEMKNVQKGIY 649


>tr|B8NR51|B8NR51_ASPFL Putative uncharacterized protein
           OS=Aspergillus flavus NRRL3357 GN=AFLA_005260 PE=4 SV=1
          Length = 1161

 Score = 35.0 bits (79), Expect = 2.7
 Identities = 22/63 (34%), Positives = 34/63 (53%)
 Frame = -3

Query: 247 HLRNSRKLPSRGSSDYYRRRERLLKRVQTQIYRSLTYNSNGKNMKLSLRSTEEERWLKQE 68
           H RNS    + G + Y   R R  KR+   + + +T NS+G+ +K    S+EEE   + E
Sbjct: 465 HWRNSN---AHGGAHYLHPRARKNKRIVAVVEKDVT-NSDGEQLKTESESSEEEYSSQSE 520

Query: 67  ESN 59
           ES+
Sbjct: 521 ESD 523


>tr|B0C3K4|B0C3K4_ACAM1 Putative uncharacterized protein
           OS=Acaryochloris marina (strain MBIC 11017) GN=AM1_4867
           PE=4 SV=1
          Length = 668

 Score = 34.3 bits (77), Expect = 4.7
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
 Frame = -1

Query: 432 PLSILTDRDVLPRLLRPYKMKQRFQISPYTP-------PESPSITRTSCDGFSPNQRSGF 274
           P+ +    ++ P LL+P     R Q  P  P       P SP+IT TS  G  P   + F
Sbjct: 32  PMLVAGPYELNPGLLQPIVQPDRSQKKPARPQASPQPFPSSPAITPTSPSGAGPQGGASF 91

Query: 273 PT 268
           PT
Sbjct: 92  PT 93


>tr|Q6DN95|Q6DN95_9SACH RNA polymerase subunit II-2 (Fragment)
           OS=Lodderomyces elongisporus PE=3 SV=1
          Length = 356

 Score = 34.3 bits (77), Expect = 4.7
 Identities = 22/78 (28%), Positives = 34/78 (43%)
 Frame = -1

Query: 534 HPCHWQLHCLSSDPVGDAVAAATQCA*LSGAEWIPLSILTDRDVLPRLLRPYKMKQRFQI 355
           H  HW L C +  P G A       + +S      +S+ T  D +   LR + ++    +
Sbjct: 112 HNTHWGLVCPAETPEGQACGLVKNLSLMSC-----ISVGTPSDPILSFLRDWGLEP---L 163

Query: 354 SPYTPPESPSITRTSCDG 301
             YTP  SP +TR   +G
Sbjct: 164 EDYTPANSPDVTRVFVNG 181


>tr|A5DVP4|A5DVP4_LODEL DNA-directed RNA polymerase OS=Lodderomyces
           elongisporus GN=LELG_01430 PE=3 SV=1
          Length = 1238

 Score = 34.3 bits (77), Expect = 4.7
 Identities = 22/78 (28%), Positives = 34/78 (43%)
 Frame = -1

Query: 534 HPCHWQLHCLSSDPVGDAVAAATQCA*LSGAEWIPLSILTDRDVLPRLLRPYKMKQRFQI 355
           H  HW L C +  P G A       + +S      +S+ T  D +   LR + ++    +
Sbjct: 513 HNTHWGLVCPAETPEGQACGLVKNLSLMSC-----ISVGTPSDPILSFLRDWGLEP---L 564

Query: 354 SPYTPPESPSITRTSCDG 301
             YTP  SP +TR   +G
Sbjct: 565 EDYTPANSPDVTRVFVNG 582


>tr|A5C9C7|A5C9C7_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_026971 PE=4 SV=1
          Length = 165

 Score = 33.5 bits (75), Expect = 7.9
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -3

Query: 190 RERLLKRVQTQIYRSLTYNSNGKNMKLSLRST-EEERWLKQEESNTCTLPKTVENAFYPS 14
           R + +  V   ++ SLT N+ G+N K  +  T   E WL+ +     ++ KT E  F+ S
Sbjct: 7   RRKFVVHVSATLHGSLTNNNRGQNDKKKIHDTITPEDWLRNDGGTLVSVGKTFELGFFNS 66


>tr|Q9Y133|Q9Y133_DROME Metabotropic GABA-B receptor subtype 2,
            isoform B OS=Drosophila melanogaster GN=GABA-B-R2 PE=2
            SV=1
          Length = 1221

 Score = 33.5 bits (75), Expect = 7.9
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +3

Query: 441  QLHLTMRTELQQQQHHRRGLSLSSAVASDRDDDL 542
            Q H  M+ + QQQQHH R L   ++V++  DD++
Sbjct: 905  QQHQQMQQQQQQQQHHHRHLEKRNSVSAQTDDNI 938


>tr|Q9BML6|Q9BML6_DROME Metabotropic GABA-B receptor subtype 2
            OS=Drosophila melanogaster GN=GABA-B-R2 PE=2 SV=1
          Length = 1220

 Score = 33.5 bits (75), Expect = 7.9
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +3

Query: 441  QLHLTMRTELQQQQHHRRGLSLSSAVASDRDDDL 542
            Q H  M+ + QQQQHH R L   ++V++  DD++
Sbjct: 904  QQHQQMQQQQQQQQHHHRHLEKRNSVSAQTDDNI 937


>tr|Q8IN24|Q8IN24_DROME Metabotropic GABA-B receptor subtype 2,
            isoform A OS=Drosophila melanogaster GN=GABA-B-R2 PE=1
            SV=1
          Length = 1220

 Score = 33.5 bits (75), Expect = 7.9
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +3

Query: 441  QLHLTMRTELQQQQHHRRGLSLSSAVASDRDDDL 542
            Q H  M+ + QQQQHH R L   ++V++  DD++
Sbjct: 904  QQHQQMQQQQQQQQHHHRHLEKRNSVSAQTDDNI 937