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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912181
Clone id YMU001_000016_B01
Library
Length 452
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000016_B01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTTGTCTGCAAGTGAATCACACAACATTTTCCACAAGAAACGCAGATGAAGTGTCAAGCA
AGTAAAAACATTCCGTGGTGTTGATCCCCTCACTCACATCCTCAGTAAGCTCAAAGCAAA
AGGTAGCTTTCAGCTCACACCCTGCTCTGCCATGCCCGTGAAAGTAACAACCATGCCCTG
AATCCAGGGAAAACCCAAAGTTACCTGTCGTGGAGAGTAAAAACATACTGCAAGGTACAC
GTCTATGCACAGTATGAAAAGTACAACACCTTACTGTCATATCACCCAATGTATGGAGAC
CAACACGTCGAGAAGCAACGCAATGTCTCCAAACTCAGTGTCTGTGATTGTTCACCTATT
ATTGTTTAAGATTGAATGCAATCAGCTGATCGTTCACGTTTCAAACAGCAACAGACTGCC
GCACGAATACATAAAGACCCTTGCCCAACTCC
■■Homology search results ■■ -
sp_hit_id Q297L2
Definition sp|Q297L2|NRBP_DROPS Nuclear receptor-binding protein homolog OS=Drosophila pseudoobscura pseudoobscura
Align length 58
Score (bit) 30.8
E-value 2.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912181|Adiantum capillus-veneris mRNA, clone:
YMU001_000016_B01.
         (452 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q297L2|NRBP_DROPS Nuclear receptor-binding protein homolog OS...    31   2.8  
sp|P13769|FLP_ZYGBA Recombinase Flp protein OS=Zygosaccharomyces...    30   4.8  

>sp|Q297L2|NRBP_DROPS Nuclear receptor-binding protein homolog
           OS=Drosophila pseudoobscura pseudoobscura GN=Madm PE=3
           SV=2
          Length = 663

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 18/58 (31%), Positives = 31/58 (53%)
 Frame = +3

Query: 30  STRNADEVSSK*KHSVVLIPSLTSSVSSKQKVAFSSHPALPCP*K*QPCPESRENPKL 203
           S+ +ADE +     S  L+P+LT++ +S Q    S+ P    P + QP P+ +  P +
Sbjct: 10  SSGSADEPTLNPSGSATLVPNLTTTNASSQATPASTIPQQQQPQQSQPQPQPQPPPHI 67


>sp|P13769|FLP_ZYGBA Recombinase Flp protein OS=Zygosaccharomyces
           bailii PE=3 SV=1
          Length = 474

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +1

Query: 220 KTYCKVHVYAQYEKYNTLLSYHPMYGDQHVEKQRNVSKLS 339
           K +   H+ A Y   N+L S   +YG+  VE+Q  VSK++
Sbjct: 299 KAHLGRHLMASYLGNNSLKSEATLYGNWSVERQEGVSKMA 338
tr_hit_id Q8DPF1
Definition tr|Q8DPF1|Q8DPF1_STRR6 Putative uncharacterized protein spr1195 OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
Align length 35
Score (bit) 37.0
E-value 0.49
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912181|Adiantum capillus-veneris mRNA, clone:
YMU001_000016_B01.
         (452 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q8DPF1|Q8DPF1_STRR6 Putative uncharacterized protein spr1195 ...    37   0.49 
tr|Q04K09|Q04K09_STRP2 Putative uncharacterized protein OS=Strep...    37   0.49 
tr|A5MGI3|A5MGI3_STRPN Putative uncharacterized protein OS=Strep...    37   0.49 
tr|A5M7S9|A5M7S9_STRPN Glutamate dehydrogenase OS=Streptococcus ...    37   0.49 
tr|Q24F34|Q24F34_TETTH Putative uncharacterized protein OS=Tetra...    34   4.2  
tr|Q52QV1|Q52QV1_9POAL Putative phenylalanine ammonia-lyase OS=B...    33   7.1  
tr|Q23QP1|Q23QP1_TETTH Cation channel family protein OS=Tetrahym...    33   7.1  
tr|B0N9R6|B0N9R6_EUBSP Putative uncharacterized protein OS=Clost...    33   9.3  

>tr|Q8DPF1|Q8DPF1_STRR6 Putative uncharacterized protein spr1195
           OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
           GN=spr1195 PE=4 SV=1
          Length = 307

 Score = 37.0 bits (84), Expect = 0.49
 Identities = 17/35 (48%), Positives = 20/35 (57%)
 Frame = -2

Query: 205 GNFGFSLDSGHGCYFHGHGRAGCELKATFCFELTE 101
           GNF F L+SG+GCYF GH   G +    F  E  E
Sbjct: 104 GNFDFQLESGYGCYFDGHLFFGFQESYLFNIETQE 138


>tr|Q04K09|Q04K09_STRP2 Putative uncharacterized protein
           OS=Streptococcus pneumoniae serotype 2 (strain D39 /
           NCTC 7466) GN=SPD_1171 PE=4 SV=1
          Length = 307

 Score = 37.0 bits (84), Expect = 0.49
 Identities = 17/35 (48%), Positives = 20/35 (57%)
 Frame = -2

Query: 205 GNFGFSLDSGHGCYFHGHGRAGCELKATFCFELTE 101
           GNF F L+SG+GCYF GH   G +    F  E  E
Sbjct: 104 GNFDFQLESGYGCYFDGHLFFGFQESYLFNIETQE 138


>tr|A5MGI3|A5MGI3_STRPN Putative uncharacterized protein
           OS=Streptococcus pneumoniae SP18-BS74
           GN=CGSSp18BS74_09905 PE=4 SV=1
          Length = 307

 Score = 37.0 bits (84), Expect = 0.49
 Identities = 17/35 (48%), Positives = 20/35 (57%)
 Frame = -2

Query: 205 GNFGFSLDSGHGCYFHGHGRAGCELKATFCFELTE 101
           GNF F L+SG+GCYF GH   G +    F  E  E
Sbjct: 104 GNFDFQLESGYGCYFDGHLFFGFQESYLFNIETQE 138


>tr|A5M7S9|A5M7S9_STRPN Glutamate dehydrogenase OS=Streptococcus
           pneumoniae SP14-BS69 GN=CGSSp14BS69_04728 PE=4 SV=1
          Length = 307

 Score = 37.0 bits (84), Expect = 0.49
 Identities = 17/35 (48%), Positives = 20/35 (57%)
 Frame = -2

Query: 205 GNFGFSLDSGHGCYFHGHGRAGCELKATFCFELTE 101
           GNF F L+SG+GCYF GH   G +    F  E  E
Sbjct: 104 GNFDFQLESGYGCYFDGHLFFGFQESYLFNIETQE 138


>tr|Q24F34|Q24F34_TETTH Putative uncharacterized protein
            OS=Tetrahymena thermophila SB210 GN=TTHERM_00944120 PE=4
            SV=1
          Length = 1212

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 24/123 (19%), Positives = 52/123 (42%), Gaps = 11/123 (8%)
 Frame = +2

Query: 53   VKQVKTFRGVDPLTHILSKLKAKGSFQLT-PCSAMPVKVTTMP*IQGKPKVTCRGE*KHT 229
            + ++K F  +  +  ++  +  +G + ++  CS +PV + +   +   P      E    
Sbjct: 724  INRLKGFGFIKQVKAVVQNINIQGYYWISFYCSILPVTINSQVSLLSYPLHGGNVE---- 779

Query: 230  ARYTSMHSMKSTTPYCHITQCMETNTSRSNAMSPNSVSVI----------VHLLLFKIEC 379
              +   H  K     C+ITQC+++  S  N    N++ ++          +H + F + C
Sbjct: 780  -YFLVPHGQKILIRICYITQCIDSKYSMLNLQESNNLFILMRHQSPFSGGIHFIEFDVIC 838

Query: 380  NQL 388
            N L
Sbjct: 839  NYL 841


>tr|Q52QV1|Q52QV1_9POAL Putative phenylalanine ammonia-lyase
           OS=Bambusa ventricosa PE=2 SV=1
          Length = 774

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
 Frame = -2

Query: 346 HRH*VWRHCVASRRVG---LHTLGDMTVRCCTFHTVHRRVPCSMFLLSTTGNFGFSLDSG 176
           H+  + R  V SRR G   +H   + T+R C  HTV     CS+ L+   G +  SL S 
Sbjct: 700 HQLSIRRPSVRSRRRGDSKIHQKKNKTLRVCPDHTVTFAFLCSLALVILIGVWRCSLCSC 759

Query: 175 HGCYFHGHGRAGC 137
                + H   GC
Sbjct: 760 SAIACNAHASVGC 772


>tr|Q23QP1|Q23QP1_TETTH Cation channel family protein OS=Tetrahymena
           thermophila SB210 GN=TTHERM_00252410 PE=4 SV=1
          Length = 1167

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
 Frame = +2

Query: 182 IQGKPKVTCRG---E*KHTARYTSMHSMKSTTPYCHITQCMETNTSRSNAMSPNSVSVIV 352
           IQG+   T R       H +RY+  +++       + ++CM+T  ++ NA        I+
Sbjct: 487 IQGENSSTLRSITLNSSHNSRYSDQNNLNKILASANSSRCMQTTQNKQNAEQTQQTCKIL 546

Query: 353 HLLL-FKIECNQLIVH--VSNSNRLPHEYIKTLAQ 448
            LL   ++   Q+I++  V+N  +L  E    L+Q
Sbjct: 547 ELLSNIQLHYLQIIINFFVNNKTKLEEEQQIDLSQ 581


>tr|B0N9R6|B0N9R6_EUBSP Putative uncharacterized protein
           OS=Clostridium scindens ATCC 35704 GN=CLOSCI_00178 PE=4
           SV=1
          Length = 485

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 19/61 (31%), Positives = 32/61 (52%)
 Frame = +1

Query: 244 YAQYEKYNTLLSYHPMYGDQHVEKQRNVSKLSVCDCSPIIV*D*MQSADRSRFKQQQTAA 423
           Y   EK  TLL+   + G  H + +  +  LS CDCS +I  +   S + +++KQ  + A
Sbjct: 126 YVDQEKGWTLLNRGIVIGSIHFKIEELIRGLSDCDCSELIRKEAQLSREMTKYKQMFSVA 185

Query: 424 R 426
           +
Sbjct: 186 Q 186