NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912182
Clone id YMU001_000016_B02
Library
Length 418
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000016_B02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GTGCTCCCAGTGGGTACCTTTCTTCAGAGGCGCCGTATCCGCTCTTCATCATGTGTCTGT
TGCTTGTCTGTTGAGGAGGATGTTTGTCACCTCTTGTGGGATTGCTGTGTCACGCGAGAA
TTCCTTCGTCGGGTTTTTGCGTGTATGCGGCTACGTTTTCCCACGACGGTCTTCCATAAG
CGGTTTTGGATTTTTGGTATCTTCTCGTCGGCGTTGCAGTGCTTTGCAGCCTTCTTCATG
TGGGTCAGGTTTTGGGCATACTGGAGCCTGTGGCGACAGCGTAATGGCTATATGTTCCAT
CGCATTCATACGGATCCACTACCTTTCTTCAAGATTTCCCTTCGGCAGTCTTTGCGGTTT
GCCTTGGAAGTTGGGGATATCACGTCAGAGATACATCAACTTTCTTATGAATGCTTTT
■■Homology search results ■■ -
sp_hit_id A1U600
Definition sp|A1U600|IF2_MARAV Translation initiation factor IF-2 OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8)
Align length 57
Score (bit) 32.3
E-value 0.76
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912182|Adiantum capillus-veneris mRNA, clone:
YMU001_000016_B02.
         (418 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A1U600|IF2_MARAV Translation initiation factor IF-2 OS=Marino...    32   0.76 
sp|Q9NSD4|ZN275_HUMAN Zinc finger protein 275 OS=Homo sapiens GN...    30   3.8  
sp|P22808|VND_DROME Homeobox protein vnd OS=Drosophila melanogas...    30   3.8  
sp|P80492|BRAC2_BRAFL Brachyury protein homolog 2 OS=Branchiosto...    30   3.8  
sp|Q17134|BRAC1_BRAFL Brachyury protein homolog 1 OS=Branchiosto...    30   3.8  
sp|P41217|OX2G_HUMAN OX-2 membrane glycoprotein OS=Homo sapiens ...    30   3.8  
sp|P15241|K2M2_SHEEP Keratin, type II microfibrillar, component ...    30   4.9  
sp|Q21UT1|CLPS_RHOFD ATP-dependent Clp protease adapter protein ...    30   4.9  
sp|Q9VCY8|ADRL_DROME ADIPOR-like receptor CG5315 OS=Drosophila m...    30   4.9  
sp|Q47JQ3|NADD_DECAR Probable nicotinate-nucleotide adenylyltran...    29   6.4  
sp|P46013|KI67_HUMAN Antigen KI-67 OS=Homo sapiens GN=MKI67 PE=1...    29   6.4  
sp|P97861|KRT86_MOUSE Keratin, type II cuticular Hb6 OS=Mus musc...    29   8.4  
sp|Q6IMF0|KRT83_MOUSE Keratin, type II cuticular Hb3 OS=Mus musc...    29   8.4  
sp|Q99332|HPH1_YEAST Protein HPH1 OS=Saccharomyces cerevisiae GN...    29   8.4  
sp|Q580R0|CB027_HUMAN Uncharacterized protein C2orf27 OS=Homo sa...    29   8.4  
sp|Q85FR8|RR20_CYAME 30S ribosomal protein S20, chloroplastic OS...    29   8.4  
sp|P58270|DPF3_CHICK Zinc finger protein DPF3 OS=Gallus gallus G...    29   8.4  

>sp|A1U600|IF2_MARAV Translation initiation factor IF-2
           OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM
           11845 / VT8) GN=infB PE=3 SV=1
          Length = 848

 Score = 32.3 bits (72), Expect = 0.76
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = -2

Query: 255 PKPDPHEEGCKALQRRREDTKNPKPLMEDRRGKT*PHTRKNPTKEFSRDTAIPQEVT 85
           P+  P EE    L    E+T   KPL   ++ K   H  + PTK   R+  IP+ +T
Sbjct: 214 PRSRPVEEPV-VLSEDEEETTLRKPLRAKKKPKEKRHAFERPTKPMVREVQIPETIT 269


>sp|Q9NSD4|ZN275_HUMAN Zinc finger protein 275 OS=Homo sapiens
           GN=ZNF275 PE=2 SV=1
          Length = 458

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 27/100 (27%), Positives = 34/100 (34%), Gaps = 11/100 (11%)
 Frame = +2

Query: 2   CSQWVPFFRGAVSALHHVSVACLLRRMFVTSCGIAVSRENSFVGFLRV-----------C 148
           C Q    FR + S L H  +    R      CG A    +  +   R+           C
Sbjct: 352 CGQCGKAFRQSSSLLEHARIHSGERPYACGECGKAFRGPSDLIKHRRIHSGLKPYECDKC 411

Query: 149 GYVFPRRSSISGFGFLVSSRRRCSALQPSSCGSGFGHTGA 268
           G  F R S +S    + S  RRC     S CG  F    A
Sbjct: 412 GKAFRRSSGLSRHRRIHSGARRCEC---SQCGRVFKRRSA 448


>sp|P22808|VND_DROME Homeobox protein vnd OS=Drosophila melanogaster
           GN=vnd PE=1 SV=3
          Length = 723

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 19/58 (32%), Positives = 30/58 (51%)
 Frame = -2

Query: 288 AITLSPQAPVCPKPDPHEEGCKALQRRREDTKNPKPLMEDRRGKT*PHTRKNPTKEFS 115
           AIT+SP +P  PK  P      +L+R+RE  +  +   EDR+ +   H R    + F+
Sbjct: 39  AITVSPSSPATPK-RPLRTSTPSLERKRE--REDREDREDRKERQERHERDRDHERFA 93


>sp|P80492|BRAC2_BRAFL Brachyury protein homolog 2 OS=Branchiostoma
           floridae GN=BRA-2 PE=2 SV=1
          Length = 440

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 9/63 (14%)
 Frame = -2

Query: 264 PVCPKPDPHE---------EGCKALQRRREDTKNPKPLMEDRRGKT*PHTRKNPTKEFSR 112
           P+CP P+PH+          GC      R     P P          P+ R +P   +  
Sbjct: 249 PICPPPNPHQFAPSLGLPSHGCDRYSTLRNHRSAPYPH---------PYQRSSPPTNYGH 299

Query: 111 DTA 103
           DTA
Sbjct: 300 DTA 302


>sp|Q17134|BRAC1_BRAFL Brachyury protein homolog 1 OS=Branchiostoma
           floridae GN=BRA-1 PE=2 SV=1
          Length = 448

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 9/63 (14%)
 Frame = -2

Query: 264 PVCPKPDPHE---------EGCKALQRRREDTKNPKPLMEDRRGKT*PHTRKNPTKEFSR 112
           P+CP P+PH+          GC      R     P P          P+ R +P   +  
Sbjct: 257 PICPPPNPHQFAPSLGLPSHGCDRYSTLRNHRSAPYPH---------PYQRSSPPTNYGH 307

Query: 111 DTA 103
           DTA
Sbjct: 308 DTA 310


>sp|P41217|OX2G_HUMAN OX-2 membrane glycoprotein OS=Homo sapiens
           GN=CD200 PE=2 SV=3
          Length = 278

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
 Frame = +3

Query: 117 RIPSSGFCVYAATFSHDGLP*AVLDFWYLL-----VGVAVLCSLLHVGQVLGILEPVATA 281
           ++P SG      T SH     +V    ++      VG  V+C +LH+G V    + V   
Sbjct: 173 KVPRSGIENSTVTLSHPNGTTSVTSILHIKDPKNQVGKEVICQVLHLGTVTDFKQTVNKG 232

Query: 282 *WLYVP 299
            W  VP
Sbjct: 233 YWFSVP 238


>sp|P15241|K2M2_SHEEP Keratin, type II microfibrillar, component 7C
           OS=Ovis aries PE=1 SV=1
          Length = 491

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = +2

Query: 167 RSSISGFGFLVSSRRRCSALQPSSCGSGFGHT--GACGDSVMAICSIA 304
           R    GFG    SR  C   +  SCG  FG+   G CG S   I +++
Sbjct: 42  RGLTGGFG----SRSVCGGFRAGSCGRSFGYRSGGVCGPSPPCITTVS 85


>sp|Q21UT1|CLPS_RHOFD ATP-dependent Clp protease adapter protein
           clpS OS=Rhodoferax ferrireducens (strain DSM 15236 /
           ATCC BAA-621 / T118) GN=clpS PE=3 SV=1
          Length = 120

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 279 LSPQAPVCPKPDPHEEGCKALQRRREDTKNP 187
           ++P+ P+  +PD  E G   L+RR + TK P
Sbjct: 7   VNPKVPLVQEPDRDEGGAVVLERRTQKTKPP 37


>sp|Q9VCY8|ADRL_DROME ADIPOR-like receptor CG5315 OS=Drosophila
           melanogaster GN=CG5315 PE=1 SV=2
          Length = 444

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 271 WRQRNGYMFHRIHTDPLPFFKISLRQSLRFALEVGDITSEI 393
           W Q N ++ HR H  PLP F+   +   R   E G+I + +
Sbjct: 172 WLQDNDFL-HRGHRPPLPSFRACFKSIFRVHTETGNIWTHL 211


>sp|Q47JQ3|NADD_DECAR Probable nicotinate-nucleotide
           adenylyltransferase OS=Dechloromonas aromatica (strain
           RCB) GN=nadD PE=3 SV=1
          Length = 217

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -2

Query: 318 WIRMNAMEHIAITLSPQAPVCPKPDPHEEGCKALQRRREDTKNPK 184
           W  + A+ H+A++  P  PV     PHE   +   RRR D +  K
Sbjct: 120 WRDIFALAHVAVSHRPGFPVEISSLPHELASEFTDRRRADVRGLK 164
tr_hit_id A4YJA4
Definition tr|A4YJA4|A4YJA4_BRASO Putative uncharacterized protein OS=Bradyrhizobium sp. (strain ORS278)
Align length 76
Score (bit) 35.0
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912182|Adiantum capillus-veneris mRNA, clone:
YMU001_000016_B02.
         (418 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A4YJA4|A4YJA4_BRASO Putative uncharacterized protein OS=Brady...    35   1.9  
tr|Q57WV4|Q57WV4_9TRYP Putative uncharacterized protein OS=Trypa...    34   4.1  
tr|Q0EVZ1|Q0EVZ1_9PROT Carbon starvation regulatory protein OS=M...    33   7.0  
tr|A6EYK3|A6EYK3_9ALTE Translation initiation factor IF-2 OS=Mar...    33   7.0  
tr|B3E6S1|B3E6S1_GEOLS Putative uncharacterized protein OS=Geoba...    33   9.2  
tr|Q8SAZ6|Q8SAZ6_ORYSA Putative non-LTR retroelement reverse tra...    33   9.2  
tr|Q7G6D1|Q7G6D1_ORYSJ Putative non-LTR retroelement reverse tra...    33   9.2  
tr|B2A9T3|B2A9T3_PODAN Predicted CDS Pa_1_1710 OS=Podospora anse...    33   9.2  

>tr|A4YJA4|A4YJA4_BRASO Putative uncharacterized protein
           OS=Bradyrhizobium sp. (strain ORS278) GN=BRADO0007 PE=4
           SV=1
          Length = 248

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 13/76 (17%)
 Frame = +1

Query: 130 RVFACMRLRFPTTVFHKRFW-----------IFGIFSSALQCFAAFFMWVRFWAYWSLWR 276
           RV A + L+   T+   RFW           +  + S ALQ F A+ +   F+ +W   R
Sbjct: 39  RVLAVILLQVGVTLATGRFWMQLFDGASLLELRALPSPALQGFLAWLIGTFFFYWWHRIR 98

Query: 277 QRNGY--MFHRIHTDP 318
             NG+  +FH+IH  P
Sbjct: 99  HLNGWWQLFHQIHHSP 114


>tr|Q57WV4|Q57WV4_9TRYP Putative uncharacterized protein
           OS=Trypanosoma brucei GN=Tb927.3.710 PE=4 SV=1
          Length = 665

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 12/74 (16%)
 Frame = +1

Query: 151 LRFPTTVFHKRFWIFGIFSSAL----QCFAAFF--------MWVRFWAYWSLWRQRNGYM 294
           LR P   FH R W+ G  + +L     C   FF        + VR W    L  ++   +
Sbjct: 261 LRTPADAFHFRMWLTGSVTGSLFLLGGCLCIFFSFVIGTKELGVRLWRAVPLEGRQRTVL 320

Query: 295 FHRIHTDPLPFFKI 336
           F  +  D LP F I
Sbjct: 321 FEEVEGDDLPCFPI 334


>tr|Q0EVZ1|Q0EVZ1_9PROT Carbon starvation regulatory protein
           OS=Mariprofundus ferrooxydans PV-1 GN=SPV1_13042 PE=4
           SV=1
          Length = 560

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
 Frame = +2

Query: 173 SISGFGFLVSSRRRCSALQPSSCGSGFGHTGACGDSVMAICSIAFIRIHYLSSRFPFGSL 352
           ++SGF  LV+S      L   S     G+ G  G+S++A+ ++        SSR  + S 
Sbjct: 299 AVSGFHGLVASGTTSKQLNKESDAPFVGYIGMVGESLLALLAVLATTAGAFSSRADWESF 358

Query: 353 -------CGLPWKLGISRQRYINFL 406
                   GL  KLGI  Q   NF+
Sbjct: 359 YGSWDKAVGLHQKLGIFIQGNANFI 383


>tr|A6EYK3|A6EYK3_9ALTE Translation initiation factor IF-2
           OS=Marinobacter algicola DG893 GN=MDG893_04082 PE=3 SV=1
          Length = 848

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = -2

Query: 255 PKPDPHEEGCKALQRRREDTKNPKPLMEDRRGKT*PHTRKNPTKEFSRDTAIPQEVT 85
           P+  P EE    +    EDT   KPL   ++ K   H  + PTK   R+  IP+ +T
Sbjct: 216 PRSRPVEEPL-IINEEEEDTTLRKPLRAKKKPKEKRHAFERPTKPMVREVDIPETIT 271


>tr|B3E6S1|B3E6S1_GEOLS Putative uncharacterized protein
           OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 /
           SZ) GN=Glov_1174 PE=3 SV=1
          Length = 111

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 270 QAPVCPKPDPHEEGCKALQRRREDTKNPKPLMEDRRGKT 154
           Q PV  +P PH+E  KA     ++TK P   + D++  T
Sbjct: 62  QQPVVQQPAPHQEAPKAAAETVKETKKPDSKISDKKSNT 100


>tr|Q8SAZ6|Q8SAZ6_ORYSA Putative non-LTR retroelement reverse
           transcriptase OS=Oryza sativa GN=OSJNBa0029P16.15 PE=4
           SV=1
          Length = 362

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +1

Query: 235 FMWVRFWAYWSLWRQRNGYMFHRIHTDPLPF--FKISLRQSL 354
           F+ + F A W +W+QRNG +F  +   PL F  +K+  R+ L
Sbjct: 302 FLEIFFIAAWYIWKQRNGMIFQNV---PLTFHGWKVQFRKEL 340


>tr|Q7G6D1|Q7G6D1_ORYSJ Putative non-LTR retroelement reverse
           transcriptase (Retrotransposon protein, putative,
           unclassified) OS=Oryza sativa subsp. japonica
           GN=OSJNAb0022I16.17 PE=4 SV=1
          Length = 362

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +1

Query: 235 FMWVRFWAYWSLWRQRNGYMFHRIHTDPLPF--FKISLRQSL 354
           F+ + F A W +W+QRNG +F  +   PL F  +K+  R+ L
Sbjct: 302 FLEIFFIAAWYIWKQRNGMIFQNV---PLTFHGWKVQFRKEL 340


>tr|B2A9T3|B2A9T3_PODAN Predicted CDS Pa_1_1710 OS=Podospora
           anserina PE=4 SV=1
          Length = 809

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = -1

Query: 220 TATPTRRYQKSKTAYGRPSWENVAAYTQKPDEGILA*HSNPTRGDKHPPQQTSNRH 53
           T TPTR      T+ G+PS E       KP  G+   H +    +K P  +  +R+
Sbjct: 433 TRTPTRSPSFGTTSEGQPSEETARNRISKPGTGVFEAHEDAIEDEKPPRHRKRDRY 488