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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912183
Clone id YMU001_000016_B03
Library
Length 208
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000016_B03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTCCAACTAGTCTAAATGATACCTTTGCATAGCTATAAGCTTCCCAACAGAATGGTTCTT
CAAGATCAACAGCAGCAAGATTGAGGTCCTCCTTCGTCATTCTTTCCTGTAGTGTATCTT
GAGCCTGATTCTTATCACTGGCAGTGTCACTCTCAATGTCAAATTCGTCGCTATATCCAT
CTATTGTAAACTGAGACCTATTAACAAC
■■Homology search results ■■ -
sp_hit_id P96722
Definition sp|P96722|YWQJ_BACSU UPF0720 protein ywqJ OS=Bacillus subtilis
Align length 48
Score (bit) 29.6
E-value 4.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912183|Adiantum capillus-veneris mRNA, clone:
YMU001_000016_B03.
         (208 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P96722|YWQJ_BACSU UPF0720 protein ywqJ OS=Bacillus subtilis G...    30   4.9  

>sp|P96722|YWQJ_BACSU UPF0720 protein ywqJ OS=Bacillus subtilis
           GN=ywqJ PE=3 SV=1
          Length = 602

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -1

Query: 208 VVNRSQFTIDGYSDEFDIESDTASDKNQAQDTLQERMTKEDLNLAAVD 65
           +++   +T+D Y+D+         D   A D L E +T E  NL ++D
Sbjct: 132 IIDLDMYTLDDYADKMGDAQKIRRDTITAVDKLDESLTTEYQNLESLD 179
tr_hit_id Q9SKT8
Definition tr|Q9SKT8|Q9SKT8_ARATH Putative uncharacterized protein At2g20790 OS=Arabidopsis thaliana
Align length 59
Score (bit) 58.2
E-value 2.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912183|Adiantum capillus-veneris mRNA, clone:
YMU001_000016_B03.
         (208 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9SKT8|Q9SKT8_ARATH Putative uncharacterized protein At2g2079...    58   2e-07
tr|Q8W0Z6|Q8W0Z6_ARATH At2g20790/F5H14.24 OS=Arabidopsis thalian...    58   2e-07
tr|B6SS12|B6SS12_MAIZE Adaptor complexes medium subunit family p...    57   6e-07
tr|Q2QPI4|Q2QPI4_ORYSJ Adaptor complexes medium subunit family p...    54   4e-06
tr|Q2QPI3|Q2QPI3_ORYSJ Os12g0528300 protein OS=Oryza sativa subs...    54   4e-06
tr|B8BM86|B8BM86_ORYSI Putative uncharacterized protein OS=Oryza...    54   4e-06
tr|Q3E6W7|Q3E6W7_ARATH Uncharacterized protein At2g20790.3 OS=Ar...    50   7e-05
tr|A7NWD0|A7NWD0_VITVI Chromosome chr5 scaffold_2, whole genome ...    48   2e-04
tr|A9T8E7|A9T8E7_PHYPA Predicted protein OS=Physcomitrella paten...    46   0.001
tr|A7Z9J4|A7Z9J4_BACA2 YwqJ OS=Bacillus amyloliquefaciens (strai...    34   4.1  
tr|A8PWI6|A8PWI6_MALGO Putative uncharacterized protein OS=Malas...    34   4.1  
tr|B4WXH0|B4WXH0_9GAMM Conserved domain protein OS=Alcanivorax s...    33   9.1  

>tr|Q9SKT8|Q9SKT8_ARATH Putative uncharacterized protein At2g20790
           OS=Arabidopsis thaliana GN=At2g20790 PE=2 SV=1
          Length = 475

 Score = 58.2 bits (139), Expect = 2e-07
 Identities = 27/59 (45%), Positives = 40/59 (67%)
 Frame = -1

Query: 178 GYSDEFDIESDTASDKNQAQDTLQERMTKEDLNLAAVDLEEPFCWEAYSYAKVSFRLVG 2
           G  D+ + E ++A +    +D L ++M K+   L A +LEEPFCW+AY YAKVSF++VG
Sbjct: 371 GDGDDEESEDESAENVVNVEDFLVQKMNKD---LPAAELEEPFCWQAYDYAKVSFKIVG 426


>tr|Q8W0Z6|Q8W0Z6_ARATH At2g20790/F5H14.24 OS=Arabidopsis thaliana
           GN=At2g20790 PE=2 SV=1
          Length = 613

 Score = 58.2 bits (139), Expect = 2e-07
 Identities = 27/59 (45%), Positives = 40/59 (67%)
 Frame = -1

Query: 178 GYSDEFDIESDTASDKNQAQDTLQERMTKEDLNLAAVDLEEPFCWEAYSYAKVSFRLVG 2
           G  D+ + E ++A +    +D L ++M K+   L A +LEEPFCW+AY YAKVSF++VG
Sbjct: 509 GDGDDEESEDESAENVVNVEDFLVQKMNKD---LPAAELEEPFCWQAYDYAKVSFKIVG 564


>tr|B6SS12|B6SS12_MAIZE Adaptor complexes medium subunit family
           protein OS=Zea mays PE=2 SV=1
          Length = 629

 Score = 56.6 bits (135), Expect = 6e-07
 Identities = 26/59 (44%), Positives = 38/59 (64%)
 Frame = -1

Query: 178 GYSDEFDIESDTASDKNQAQDTLQERMTKEDLNLAAVDLEEPFCWEAYSYAKVSFRLVG 2
           GY+++ D E D   +     D + E++ K+   L AVDLEEP  W+AY+YAKVSF++ G
Sbjct: 522 GYTEDSDSEQDNVKNGASLDDYIMEKINKD---LQAVDLEEPLSWQAYNYAKVSFKVTG 577


>tr|Q2QPI4|Q2QPI4_ORYSJ Adaptor complexes medium subunit family
           protein, expressed (Putative uncharacterized protein)
           OS=Oryza sativa subsp. japonica GN=LOC_Os12g34370 PE=4
           SV=2
          Length = 619

 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 26/58 (44%), Positives = 37/58 (63%)
 Frame = -1

Query: 175 YSDEFDIESDTASDKNQAQDTLQERMTKEDLNLAAVDLEEPFCWEAYSYAKVSFRLVG 2
           + ++ D E D   +     D L E+M K+   L AV+LEEP  W+AY+YAKVSF++VG
Sbjct: 515 FVEDSDSEQDNTKNGANLDDYLMEKMNKD---LQAVNLEEPLSWQAYNYAKVSFKIVG 569


>tr|Q2QPI3|Q2QPI3_ORYSJ Os12g0528300 protein OS=Oryza sativa subsp.
           japonica GN=Os12g0528300 PE=4 SV=1
          Length = 437

 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 26/58 (44%), Positives = 37/58 (63%)
 Frame = -1

Query: 175 YSDEFDIESDTASDKNQAQDTLQERMTKEDLNLAAVDLEEPFCWEAYSYAKVSFRLVG 2
           + ++ D E D   +     D L E+M K+   L AV+LEEP  W+AY+YAKVSF++VG
Sbjct: 352 FVEDSDSEQDNTKNGANLDDYLMEKMNKD---LQAVNLEEPLSWQAYNYAKVSFKIVG 406


>tr|B8BM86|B8BM86_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_38560 PE=4 SV=1
          Length = 619

 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 26/58 (44%), Positives = 37/58 (63%)
 Frame = -1

Query: 175 YSDEFDIESDTASDKNQAQDTLQERMTKEDLNLAAVDLEEPFCWEAYSYAKVSFRLVG 2
           + ++ D E D   +     D L E+M K+   L AV+LEEP  W+AY+YAKVSF++VG
Sbjct: 515 FVEDSDSEQDNTKNGANLDDYLMEKMNKD---LQAVNLEEPLSWQAYNYAKVSFKIVG 569


>tr|Q3E6W7|Q3E6W7_ARATH Uncharacterized protein At2g20790.3
           OS=Arabidopsis thaliana GN=At2g20790 PE=4 SV=1
          Length = 427

 Score = 49.7 bits (117), Expect = 7e-05
 Identities = 24/57 (42%), Positives = 35/57 (61%)
 Frame = -1

Query: 178 GYSDEFDIESDTASDKNQAQDTLQERMTKEDLNLAAVDLEEPFCWEAYSYAKVSFRL 8
           G  D+ + E ++A +    +D L ++M K+   L A +LEEPFCW+AY YAKV   L
Sbjct: 371 GDGDDEESEDESAENVVNVEDFLVQKMNKD---LPAAELEEPFCWQAYDYAKVCMSL 424


>tr|A7NWD0|A7NWD0_VITVI Chromosome chr5 scaffold_2, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00019873001
           PE=4 SV=1
          Length = 606

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 19/34 (55%), Positives = 26/34 (76%)
 Frame = -1

Query: 103 RMTKEDLNLAAVDLEEPFCWEAYSYAKVSFRLVG 2
           +  K   +L   DLEEPFCW+AY+YAKV+F++VG
Sbjct: 522 KQIKMSKDLPPADLEEPFCWQAYNYAKVTFKIVG 555


>tr|A9T8E7|A9T8E7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_192614 PE=4 SV=1
          Length = 600

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 18/45 (40%), Positives = 28/45 (62%)
 Frame = -1

Query: 136 DKNQAQDTLQERMTKEDLNLAAVDLEEPFCWEAYSYAKVSFRLVG 2
           D +   D+ +    K + N+ A D+E+P CWEAYS+AK S ++ G
Sbjct: 504 DSDTEFDSQENEAFKGEANVQAADMEDPLCWEAYSFAKASIKVTG 548


>tr|A7Z9J4|A7Z9J4_BACA2 YwqJ OS=Bacillus amyloliquefaciens (strain
           FZB42) GN=ywqJ PE=4 SV=1
          Length = 582

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = -1

Query: 208 VVNRSQFTIDGYSDEFDIESDTASDKNQAQDTLQERMTKEDLNLAAVD 65
           +++   +T+D Y+D+      T  D   A DTL E +T E  NL ++D
Sbjct: 132 IIHLDTYTLDDYADKMGDAQKTRRDTITAVDTLDESLTAEYQNLESLD 179