BP912184 |
Clone id |
YMU001_000016_B04 |
Library |
YMU01 |
Length |
515 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000016_B04. |
Accession |
BP912184 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL719Contig1 |
Sequence |
TCCACACGTGACATGCGCTGCTTGATTGGCTTCCATGGCAAGATTGACTGTATGGCAGCA CGAGCAATGCACACTGGTGGCACCACGGATGTACATAAGCAAAGTGCGACAACCACCACA AATCAGCTGAGCCATTTCCGTTCCTGGAGGAGGAACTGCTGTAACTGTGCTGCAAAGTGC ACATCGCACATTGGCAGCTCCTTGAGGATAGACAAGGGAGAGTCCTACAACCACTACAAA CAAGTTGTCCCTGGGATCCAGATGGGGGAGCAGCTGCCATTTGCGGTTGAGGGGGATAGG GCACCAAAGGAACAGGCATGGCACAATATGTCTCTCTAGGCGCTTGTAAACTCGTCAATC AACCTATGTCGTCACTGTGGCAAATGTCACCTGGATAATGCCATGGCCCTGTAGATCGAA GATAAAACCCTGGAAAAACCTTTCTGGGTGACGCGTTGCGAAGCGAGTGGAACACGGAAA CTTACGCAACCCTGAAACGCCCAGGACAAGAGCAG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q5R5C5 |
Definition |
sp|Q5R5C5|NOX4_PONAB NADPH oxidase 4 OS=Pongo abelii |
Align length |
108 |
Score (bit) |
38.5 |
E-value |
0.019 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP912184|Adiantum capillus-veneris mRNA, clone: YMU001_000016_B04. (515 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q5R5C5|NOX4_PONAB NADPH oxidase 4 OS=Pongo abelii GN=NOX4 PE=... 39 0.019 sp|Q9NPH5|NOX4_HUMAN NADPH oxidase 4 OS=Homo sapiens GN=NOX4 PE=... 39 0.019 sp|Q9JHI8|NOX4_MOUSE NADPH oxidase 4 OS=Mus musculus GN=Nox4 PE=... 35 0.27 sp|Q924V1|NOX4_RAT NADPH oxidase 4 OS=Rattus norvegicus GN=Nox4 ... 34 0.35 sp|Q7XJE6|MCA1_ARATH Metacaspase-1 OS=Arabidopsis thaliana GN=AM... 33 1.0 sp|Q2QM17|YAB6_ORYSJ Protein YABBY 6 OS=Oryza sativa subsp. japo... 32 2.3 sp|Q96N77|ZN641_HUMAN Zinc finger protein 641 OS=Homo sapiens GN... 31 3.0 sp|Q10FZ7|YAB2_ORYSJ Protein YABBY 2 OS=Oryza sativa subsp. japo... 31 3.0 sp|Q7XJE5|MCA2_ARATH Metacaspase-2 OS=Arabidopsis thaliana GN=AM... 31 3.9 sp|P18749|ZO6_XENLA Oocyte zinc finger protein XlCOF6 (Fragment)... 30 5.1 sp|P51758|CYCR_RHOGE Photosynthetic reaction center cytochrome c... 30 5.1 sp|Q9LDT3|YAB4_ARATH Axial regulator YABBY 4 OS=Arabidopsis thal... 30 6.7
>sp|Q5R5C5|NOX4_PONAB NADPH oxidase 4 OS=Pongo abelii GN=NOX4 PE=2 SV=2 Length = 578
Score = 38.5 bits (88), Expect = 0.019 Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 2/108 (1%) Frame = -3
Query: 318 CLFLWCPIPLNRKWQ--LLPHLDPRDNLFVVVVGLSLVYPQGAANVRCALCSTVTAVPPP 145 CLF+W + + W+ LL + P + ++GL L + +A+V CS + Sbjct: 18 CLFIWLSMNVLLFWKTFLLYNQGPEYHYLHQMLGLGLCLSRASASVLNLNCSLI------ 71
Query: 144 GTEMAQLICGGCRTLLMYIRGATSVHCSCCHTVNLAMEANQAAHVTCG 1 + CRTLL Y+RG+ V ++ ++ H+TCG Sbjct: 72 -------LLPMCRTLLAYLRGSQKVP---SRRTRRLLDKSRTFHITCG 109
>sp|Q9NPH5|NOX4_HUMAN NADPH oxidase 4 OS=Homo sapiens GN=NOX4 PE=1 SV=2 Length = 578
Score = 38.5 bits (88), Expect = 0.019 Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 2/108 (1%) Frame = -3
Query: 318 CLFLWCPIPLNRKWQ--LLPHLDPRDNLFVVVVGLSLVYPQGAANVRCALCSTVTAVPPP 145 CLF+W + + W+ LL + P + ++GL L + +A+V CS + Sbjct: 18 CLFIWLSMNVLLFWKTFLLYNQGPEYHYLHQMLGLGLCLSRASASVLNLNCSLI------ 71
Query: 144 GTEMAQLICGGCRTLLMYIRGATSVHCSCCHTVNLAMEANQAAHVTCG 1 + CRTLL Y+RG+ V ++ ++ H+TCG Sbjct: 72 -------LLPMCRTLLAYLRGSQKVP---SRRTRRLLDKSRTFHITCG 109
>sp|Q9JHI8|NOX4_MOUSE NADPH oxidase 4 OS=Mus musculus GN=Nox4 PE=1 SV=1 Length = 578
Score = 34.7 bits (78), Expect = 0.27 Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 2/108 (1%) Frame = -3
Query: 318 CLFLWCPIPLNRKWQ--LLPHLDPRDNLFVVVVGLSLVYPQGAANVRCALCSTVTAVPPP 145 CL +W + + W+ LL + P ++GL L + +A+V CS + Sbjct: 18 CLLIWLSLNVLLFWKTFLLYNQGPEYYYIHQMLGLGLCLSRASASVLNLNCSLI------ 71
Query: 144 GTEMAQLICGGCRTLLMYIRGATSVHCSCCHTVNLAMEANQAAHVTCG 1 + CRT+L Y+RG+ V ++ ++ H+TCG Sbjct: 72 -------LLPMCRTVLAYLRGSQKVP---SRRTRRLLDKSKTLHITCG 109
>sp|Q924V1|NOX4_RAT NADPH oxidase 4 OS=Rattus norvegicus GN=Nox4 PE=1 SV=2 Length = 578
Score = 34.3 bits (77), Expect = 0.35 Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 2/108 (1%) Frame = -3
Query: 318 CLFLWCPIPLNRKWQ--LLPHLDPRDNLFVVVVGLSLVYPQGAANVRCALCSTVTAVPPP 145 CL +W + + W+ LL + P ++GL L + +A+V CS + Sbjct: 18 CLLVWLSLNVLLFWKTFLLYNQGPEYYYIHQMLGLGLCLSRASASVLNLNCSLI------ 71
Query: 144 GTEMAQLICGGCRTLLMYIRGATSVHCSCCHTVNLAMEANQAAHVTCG 1 + CRT+L Y+RG+ V ++ ++ H+TCG Sbjct: 72 -------LLPMCRTVLAYLRGSQKVP---SRRTRRLLDKSKTLHITCG 109
>sp|Q7XJE6|MCA1_ARATH Metacaspase-1 OS=Arabidopsis thaliana GN=AMC1 PE=1 SV=1 Length = 367
Score = 32.7 bits (73), Expect = 1.0 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 3/39 (7%) Frame = -3
Query: 153 PPPGTEMAQLI---CGGCRTLLMYIRGATSVHCSCCHTV 46 PPP + A + C GCRT L GA S+ C+ C V Sbjct: 4 PPPSSIYAPPMLVNCSGCRTPLQLPSGARSIRCALCQAV 42
Score = 31.6 bits (70), Expect = 2.3 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = -3
Query: 216 LVYPQGAANVRCALCSTVTAVPPPGT 139 L P GA ++RCALC VT + P T Sbjct: 25 LQLPSGARSIRCALCQAVTHIADPRT 50
>sp|Q2QM17|YAB6_ORYSJ Protein YABBY 6 OS=Oryza sativa subsp. japonica GN=YAB6 PE=2 SV=1 Length = 207
Score = 31.6 bits (70), Expect = 2.3 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 3/34 (8%) Frame = -3
Query: 189 VRCALCSTVTAVPPPGTEMAQLI---CGGCRTLL 97 V C C+T+ AV PG M ++ CG C LL Sbjct: 14 VHCNFCNTILAVSVPGNSMLNIVTVRCGHCTNLL 47
>sp|Q96N77|ZN641_HUMAN Zinc finger protein 641 OS=Homo sapiens GN=ZNF641 PE=2 SV=2 Length = 438
Score = 31.2 bits (69), Expect = 3.0 Identities = 36/128 (28%), Positives = 47/128 (36%), Gaps = 8/128 (6%) Frame = +1
Query: 121 NQLSHFRSWRRNCCNCAA--KCTSHIGSSLRID-KGESYNHYKQVVPGIQMGEQLPFAVE 291 +Q +H C C +C SH+ S R+ +G+S G ++GE P + Sbjct: 310 HQKTHLHDKTSRCSECGKNFRCNSHLASHQRVHAEGKSCK-------GQEVGES-PGTRK 361
Query: 292 GDRAPKEQAWHNMSL*ALVNSSINLCRHCGKC-----HLDNAMAL*IEDKTLEKPFWVTR 456 RAP H +C CGK HL T EKPF R Sbjct: 362 RQRAPPVPKCH-------------VCTECGKSFGRRHHLVRHWLT----HTGEKPFQCPR 404
Query: 457 CEASGTRK 480 CE S RK Sbjct: 405 CEKSFGRK 412
>sp|Q10FZ7|YAB2_ORYSJ Protein YABBY 2 OS=Oryza sativa subsp. japonica GN=YAB2 PE=2 SV=1 Length = 186
Score = 31.2 bits (69), Expect = 3.0 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 3/40 (7%) Frame = -3
Query: 207 PQGAANVRCALCSTVTAVPPPGTEMAQLI---CGGCRTLL 97 P+ V C C+T+ AV P M ++ CG C +LL Sbjct: 9 PEHVCYVHCNFCNTIFAVSVPSNSMLNIVTVRCGHCTSLL 48
>sp|Q7XJE5|MCA2_ARATH Metacaspase-2 OS=Arabidopsis thaliana GN=AMC2 PE=2 SV=1 Length = 418
Score = 30.8 bits (68), Expect = 3.9 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%) Frame = -3
Query: 120 CGGCRTLLMYIRGATSVHCSCCHTVNL-AMEANQAAHVT 7 C CRT L GAT + C+ CH L A E +H + Sbjct: 7 CSSCRTPLHLPPGATRIRCAICHAFTLIAPEPRLQSHAS 45
>sp|P18749|ZO6_XENLA Oocyte zinc finger protein XlCOF6 (Fragment) OS=Xenopus laevis PE=3 SV=1 Length = 453
Score = 30.4 bits (67), Expect = 5.1 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%) Frame = +1
Query: 367 CRHCGKCHLD-NAMAL*IEDKTLEKPFWVTRCEASGTRK 480 C CGKC D +A+ + T EKPF T C S T K Sbjct: 153 CTQCGKCFSDKSALKYHHKTHTGEKPFACTECGKSFTEK 191
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9SGA0 |
Definition |
tr|A9SGA0|A9SGA0_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens |
Align length |
72 |
Score (bit) |
136.0 |
E-value |
5.0e-31 |
Report |
|