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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912193
Clone id YMU001_000016_C01
Library
Length 384
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000016_C01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ATCACAAAACGACACTTTCATAGGAACAGAAGAACCAGTTTTCGCTTGAAGTATATCCTT
CTCCTTTCTTTTGATCCTTTCATTAACACGCTTTCCCATTTCCTCTGGATCTTCAACGCT
ATTTTCGATGATTTCTTGAATTTCCCCTATCATCTTTGAAAGCCCCGTCCAAAAAGGCTG
TCATATCCTCATAGCTCCCCTTACTCTCTCCAAACATTTCAGCTTCCACGTTAGCTTCTT
CATTTTTTCCTTCATCCTCCTCTGTCTCATCTTCATCATCTTCTTCTATTACTTGTTTCT
GTTCTGTAGAGAAACTGCTTCCATTTCGCATGTGTGCACTTGCCAAGCATTGCCTTCTCT
TAATCACAGTAATCAATCTAGAAT
■■Homology search results ■■ -
sp_hit_id P50495
Definition sp|P50495|MSP1_PLAFP Merozoite surface protein 1 OS=Plasmodium falciparum (isolate Palo Alto / Uganda)
Align length 51
Score (bit) 33.1
E-value 0.45
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912193|Adiantum capillus-veneris mRNA, clone:
YMU001_000016_C01.
         (384 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P50495|MSP1_PLAFP Merozoite surface protein 1 OS=Plasmodium f...    33   0.45 
sp|P08569|MSP1_PLAFM Merozoite surface protein 1 OS=Plasmodium f...    32   0.76 
sp|P13819|MSP1_PLAFF Merozoite surface protein 1 OS=Plasmodium f...    32   0.76 
sp|P04934|MSP1_PLAFC Merozoite surface protein 1 OS=Plasmodium f...    32   0.76 
sp|P19598|MSP1_PLAF3 Merozoite surface protein 1 OS=Plasmodium f...    32   0.76 
sp|Q74MU5|SYE_NANEQ Glutamyl-tRNA synthetase OS=Nanoarchaeum equ...    29   6.5  
sp|A1RWQ1|SYA_THEPD Alanyl-tRNA synthetase OS=Thermofilum penden...    29   6.5  
sp|Q6IMY1|MTUS1_RAT Mitochondrial tumor suppressor 1 homolog OS=...    29   6.5  
sp|Q8R7B9|ARGJ_THETN Arginine biosynthesis bifunctional protein ...    29   6.5  
sp|Q5HZI1|MTUS1_MOUSE Mitochondrial tumor suppressor 1 homolog O...    29   8.4  

>sp|P50495|MSP1_PLAFP Merozoite surface protein 1 OS=Plasmodium
            falciparum (isolate Palo Alto / Uganda) GN=MSP-1 PE=3
            SV=1
          Length = 1726

 Score = 33.1 bits (74), Expect = 0.45
 Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
 Frame = -1

Query: 168  TGLSKMIGEIQEIIEN---SVEDPEEMGKRVNERIKRKEKDILQAKTGSSV 25
            +GL ++I E++E+I+N   +   P E  K+VNE +K  E  + +AK  + V
Sbjct: 1204 SGLHQLITELKEVIKNKNYTGNSPSENNKKVNEALKSYENFLPEAKVTTVV 1254


>sp|P08569|MSP1_PLAFM Merozoite surface protein 1 OS=Plasmodium
            falciparum (isolate mad20 / Papua New Guinea) GN=MSP-1
            PE=3 SV=3
          Length = 1701

 Score = 32.3 bits (72), Expect = 0.76
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
 Frame = -1

Query: 168  TGLSKMIGEIQEIIEN---SVEDPEEMGKRVNERIKRKEKDILQAKTGSSV 25
            +GL  +I E++E+I+N   +   P E  K+VNE +K  E  + +AK  + V
Sbjct: 1179 SGLHHLITELKEVIKNKNYTGNSPSENNKKVNEALKSYENFLPEAKVTTVV 1229


>sp|P13819|MSP1_PLAFF Merozoite surface protein 1 OS=Plasmodium
            falciparum (isolate FC27 / Papua New Guinea) GN=MSP-1
            PE=2 SV=1
          Length = 1701

 Score = 32.3 bits (72), Expect = 0.76
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
 Frame = -1

Query: 168  TGLSKMIGEIQEIIEN---SVEDPEEMGKRVNERIKRKEKDILQAKTGSSV 25
            +GL  +I E++E+I+N   +   P E  K+VNE +K  E  + +AK  + V
Sbjct: 1179 SGLHHLITELKEVIKNKNYTGNSPSENNKKVNEALKSYENFLPEAKVTTVV 1229


>sp|P04934|MSP1_PLAFC Merozoite surface protein 1 OS=Plasmodium
            falciparum (isolate Camp / Malaysia) GN=MSP-1 PE=3 SV=2
          Length = 1726

 Score = 32.3 bits (72), Expect = 0.76
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
 Frame = -1

Query: 168  TGLSKMIGEIQEIIEN---SVEDPEEMGKRVNERIKRKEKDILQAKTGSSV 25
            +GL  +I E++E+I+N   +   P E  K+VNE +K  E  + +AK  + V
Sbjct: 1204 SGLHHLITELKEVIKNKNYTGNSPSENNKKVNEALKSYENFLPEAKVTTVV 1254


>sp|P19598|MSP1_PLAF3 Merozoite surface protein 1 OS=Plasmodium
            falciparum (isolate ro-33 / Ghana) GN=MSP-1 PE=2 SV=2
          Length = 1682

 Score = 32.3 bits (72), Expect = 0.76
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
 Frame = -1

Query: 168  TGLSKMIGEIQEIIEN---SVEDPEEMGKRVNERIKRKEKDILQAKTGSSV 25
            +GL  +I E++E+I+N   +   P E  K+VNE +K  E  + +AK  + V
Sbjct: 1161 SGLHHLITELKEVIKNKNYTGNSPSENNKKVNEALKSYENFLPEAKVTTVV 1211


>sp|Q74MU5|SYE_NANEQ Glutamyl-tRNA synthetase OS=Nanoarchaeum
           equitans GN=gltX PE=3 SV=1
          Length = 562

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -1

Query: 144 EIQEIIENSVEDPEEMGKRVNERIKRKEKDI 52
           EI+E+ +  +E  +E+ K   + I++KEKDI
Sbjct: 46  EIKEVEQMDIEQIKELAKAYEQTIEKKEKDI 76


>sp|A1RWQ1|SYA_THEPD Alanyl-tRNA synthetase OS=Thermofilum pendens
           (strain Hrk 5) GN=alaS PE=3 SV=1
          Length = 907

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -1

Query: 165 GLSKMIGEIQEIIENSVEDPEEMGKRVNERIKRKEKDI 52
           G+   +  +QEI++ S E  EE  K +  RI+  EK++
Sbjct: 749 GMGDKLKNLQEILDASYEGLEEKAKSLKSRIEALEKEV 786


>sp|Q6IMY1|MTUS1_RAT Mitochondrial tumor suppressor 1 homolog
           OS=Rattus norvegicus GN=Mtus1 PE=1 SV=1
          Length = 440

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = -1

Query: 162 LSKMIGEIQEIIENSVEDPEEMGKRVNERIKRKEKDILQAKTGSSVPMKVSFCD 1
           L  ++ E QE +E  + D +     +NER+K +E+  L  +  +S   +V + +
Sbjct: 254 LENLLNEKQESLEKQINDLKSENDALNERLKSEEQKQLSREKANSKNPQVMYLE 307


>sp|Q8R7B9|ARGJ_THETN Arginine biosynthesis bifunctional protein
           argJ OS=Thermoanaerobacter tengcongensis GN=argJ PE=3
           SV=1
          Length = 403

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -1

Query: 126 ENSVEDPEEMGKRVNERIKRKEKDILQAKTG 34
           E  +ED + M K+V E ++ +E+D+L   TG
Sbjct: 83  EKGIEDAKSMAKKVAEVLEIEEEDVLVCSTG 113


>sp|Q5HZI1|MTUS1_MOUSE Mitochondrial tumor suppressor 1 homolog OS=Mus
            musculus GN=Mtus1 PE=1 SV=2
          Length = 1210

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = -1

Query: 162  LSKMIGEIQEIIENSVEDPEEMGKRVNERIKRKEKDILQAKTGSSVPMKVSFCD 1
            L  ++ E QE +E  + D +     +NER+K +E+  L  +  +S   +V + +
Sbjct: 1024 LEDLLNEKQESLEKQINDLKSENDALNERLKSEEQKQLSREKANSKNPQVMYLE 1077
tr_hit_id A9RLA1
Definition tr|A9RLA1|A9RLA1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 48
Score (bit) 56.2
E-value 8.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912193|Adiantum capillus-veneris mRNA, clone:
YMU001_000016_C01.
         (384 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RLA1|A9RLA1_PHYPA Predicted protein OS=Physcomitrella paten...    56   8e-07
tr|A9NZ41|A9NZ41_PICSI Putative uncharacterized protein OS=Picea...    54   3e-06
tr|A7PEC4|A7PEC4_VITVI Chromosome chr11 scaffold_13, whole genom...    48   2e-04
tr|A7QNQ5|A7QNQ5_VITVI Chromosome undetermined scaffold_133, who...    47   5e-04
tr|Q5JKR3|Q5JKR3_ORYSJ cDNA clone:J013135L15, full insert sequen...    46   0.001
tr|B8AAC5|B8AAC5_ORYSI Putative uncharacterized protein OS=Oryza...    46   0.001
tr|A2ZUD8|A2ZUD8_ORYSJ Putative uncharacterized protein OS=Oryza...    46   0.001
tr|Q9FT95|Q9FT95_ARATH Putative uncharacterized protein F8L15_13...    45   0.001
tr|Q8VZD1|Q8VZD1_ARATH Putative uncharacterized protein (At5g084...    45   0.001
tr|B4FZE4|B4FZE4_MAIZE Putative uncharacterized protein OS=Zea m...    42   0.020
tr|Q9M0E3|Q9M0E3_ARATH Putative uncharacterized protein AT4g2940...    40   0.059
tr|Q5XV66|Q5XV66_ARATH Putative uncharacterized protein OS=Arabi...    40   0.059
tr|Q0DW79|Q0DW79_ORYSJ Os02g0827600 protein OS=Oryza sativa subs...    40   0.076
tr|B8AF65|B8AF65_ORYSI Putative uncharacterized protein OS=Oryza...    40   0.076
tr|B4FUY6|B4FUY6_MAIZE Putative uncharacterized protein OS=Zea m...    40   0.076
tr|A3ACX7|A3ACX7_ORYSJ Putative uncharacterized protein OS=Oryza...    40   0.076
tr|Q01AC5|Q01AC5_OSTTA Homology to unknown gene OS=Ostreococcus ...    36   0.85 
tr|A9S7A0|A9S7A0_PHYPA Predicted protein OS=Physcomitrella paten...    35   1.9  

>tr|A9RLA1|A9RLA1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_116227 PE=4 SV=1
          Length = 304

 Score = 56.2 bits (134), Expect = 8e-07
 Identities = 26/48 (54%), Positives = 37/48 (77%)
 Frame = -1

Query: 144 EIQEIIENSVEDPEEMGKRVNERIKRKEKDILQAKTGSSVPMKVSFCD 1
           E+QEI+ +++EDPE M +RV  R++RK +DIL++K GS  PM VSF D
Sbjct: 110 ELQEIMGDALEDPEAMKRRVENRVQRKSRDILESKKGSVNPMAVSFRD 157


>tr|A9NZ41|A9NZ41_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 276

 Score = 54.3 bits (129), Expect = 3e-06
 Identities = 24/42 (57%), Positives = 34/42 (80%)
 Frame = -1

Query: 132 IIENSVEDPEEMGKRVNERIKRKEKDILQAKTGSSVPMKVSF 7
           I+  + +DPE++ KR+ ERIK+K+KDILQ KTGS+ PM V+F
Sbjct: 88  ILMGNFDDPEKLRKRIEERIKKKQKDILQTKTGSAEPMIVTF 129


>tr|A7PEC4|A7PEC4_VITVI Chromosome chr11 scaffold_13, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00016609001
           PE=4 SV=1
          Length = 293

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 20/46 (43%), Positives = 33/46 (71%)
 Frame = -1

Query: 144 EIQEIIENSVEDPEEMGKRVNERIKRKEKDILQAKTGSSVPMKVSF 7
           E  EI+ + ++DP++   ++ ER++RK   IL  KTGS++PMKV+F
Sbjct: 102 EFAEILGSCLDDPQKARSKMEERLRRKRNKILHTKTGSALPMKVTF 147


>tr|A7QNQ5|A7QNQ5_VITVI Chromosome undetermined scaffold_133, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00002621001 PE=4 SV=1
          Length = 295

 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 21/48 (43%), Positives = 35/48 (72%)
 Frame = -1

Query: 144 EIQEIIENSVEDPEEMGKRVNERIKRKEKDILQAKTGSSVPMKVSFCD 1
           E++ ++ +S+ +PE M KRV ER+++K +D  ++KTGS +  KVSF D
Sbjct: 104 ELRAVLGDSIGNPELMRKRVEERVRKKGRDFRKSKTGSVLAYKVSFRD 151


>tr|Q5JKR3|Q5JKR3_ORYSJ cDNA clone:J013135L15, full insert sequence
           OS=Oryza sativa subsp. japonica GN=B1064G04.11 PE=2 SV=1
          Length = 281

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 23/46 (50%), Positives = 30/46 (65%)
 Frame = -1

Query: 144 EIQEIIENSVEDPEEMGKRVNERIKRKEKDILQAKTGSSVPMKVSF 7
           EI +I+    +DP +   R+ ERIK+K   I+QAKTGS  PMKV F
Sbjct: 89  EIGDIMGEYFDDPNKAQSRMEERIKKKRHKIVQAKTGSPNPMKVVF 134


>tr|B8AAC5|B8AAC5_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_02422 PE=4 SV=1
          Length = 281

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 23/46 (50%), Positives = 30/46 (65%)
 Frame = -1

Query: 144 EIQEIIENSVEDPEEMGKRVNERIKRKEKDILQAKTGSSVPMKVSF 7
           EI +I+    +DP +   R+ ERIK+K   I+QAKTGS  PMKV F
Sbjct: 89  EIGDIMGEYFDDPNKAQSRMEERIKKKRHKIVQAKTGSPNPMKVVF 134


>tr|A2ZUD8|A2ZUD8_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_002160 PE=4 SV=1
          Length = 261

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 23/46 (50%), Positives = 30/46 (65%)
 Frame = -1

Query: 144 EIQEIIENSVEDPEEMGKRVNERIKRKEKDILQAKTGSSVPMKVSF 7
           EI +I+    +DP +   R+ ERIK+K   I+QAKTGS  PMKV F
Sbjct: 89  EIGDIMGEYFDDPNKAQSRMEERIKKKRHKIVQAKTGSPNPMKVVF 134


>tr|Q9FT95|Q9FT95_ARATH Putative uncharacterized protein F8L15_130
           OS=Arabidopsis thaliana GN=F8L15_130 PE=4 SV=1
          Length = 287

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 20/48 (41%), Positives = 34/48 (70%)
 Frame = -1

Query: 144 EIQEIIENSVEDPEEMGKRVNERIKRKEKDILQAKTGSSVPMKVSFCD 1
           E++ ++ +S+ +PE M K+V ER+++K KD  + KTGS +  KV+F D
Sbjct: 96  ELRAVLGDSIGNPELMRKKVEERVRKKGKDFQKQKTGSVLSFKVNFRD 143


>tr|Q8VZD1|Q8VZD1_ARATH Putative uncharacterized protein
           (At5g08400/F8L15_130) OS=Arabidopsis thaliana
           GN=At5g08400 PE=2 SV=1
          Length = 333

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 20/48 (41%), Positives = 34/48 (70%)
 Frame = -1

Query: 144 EIQEIIENSVEDPEEMGKRVNERIKRKEKDILQAKTGSSVPMKVSFCD 1
           E++ ++ +S+ +PE M K+V ER+++K KD  + KTGS +  KV+F D
Sbjct: 142 ELRAVLGDSIGNPELMRKKVEERVRKKGKDFQKQKTGSVLSFKVNFRD 189


>tr|B4FZE4|B4FZE4_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 289

 Score = 41.6 bits (96), Expect = 0.020
 Identities = 20/46 (43%), Positives = 31/46 (67%)
 Frame = -1

Query: 144 EIQEIIENSVEDPEEMGKRVNERIKRKEKDILQAKTGSSVPMKVSF 7
           EI +I+ +  +DP++   R+ +RI++K   I+Q KTGS  PMKV F
Sbjct: 97  EIGDIMGDYFDDPKKGQTRMEDRIRKKRHKIVQTKTGSPNPMKVVF 142