BP912196 |
Clone id |
YMU001_000016_C04 |
Library |
YMU01 |
Length |
523 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000016_C04. |
Accession |
BP912196 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL1252Contig1 |
Sequence |
GAGTACCTGCGCAAAGTCAGTGCATGCCATCGTGACCTACAAGCACTTCTGTATAAAAGT GTGGTATTGACAGGTGGAACAACAAAGTTGCCAGGTTTCAAGGAAAGACTAGAGTTGGAG CTTCGTCCGATGGTTCCAGCTGAATATGATCTGAAAGTACACGCCCTGGACAACCCGATT GTTGCACCGTGGCGGGGTGGATCTCTCTTTGCTTCAAGTGAAGAATTTGAGAGCTGCTCA ATAACTAAAGGTGAATACGAGGAATTGGGTTCCCTCCGGTGCAGACGAAGGTTTATGCGT TGTTAGAGTCTTATCACAACTGTCTGATTGAATACCCTTATTAGGTGCATACCTTCTTTG ATAAGTTTAGGTATCCTCAAACTACATATTCAAGGGCAACCTGCAAATTTCCTAGTGCAG GTTTTAAAAGCTGGCATGCGTTGAAGTTGAGTCTTATCTATTTGATTGTTGCTAGCAGGA TTGCACACAAAATGGCAGCATTTTGGACATGCCAACAAAAATG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q8LGE3 |
Definition |
sp|Q8LGE3|ARP6_ARATH Actin-related protein 6 OS=Arabidopsis thaliana |
Align length |
96 |
Score (bit) |
123.0 |
E-value |
6.0e-28 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7PF62 |
Definition |
tr|A7PF62|A7PF62_VITVI Chromosome chr11 scaffold_13, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
96 |
Score (bit) |
124.0 |
E-value |
4.0e-27 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP912196|Adiantum capillus-veneris mRNA, clone: YMU001_000016_C04. (523 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7PF62|A7PF62_VITVI Chromosome chr11 scaffold_13, whole genom... 124 4e-27 tr|Q287V0|Q287V0_CARAS Actin-related protein 6 OS=Cardaminopsis ... 123 6e-27 tr|A9PH83|A9PH83_POPTR Putative uncharacterized protein OS=Popul... 123 6e-27 tr|Q287X0|Q287X0_OLIPU Actin-related protein 6 OS=Olimarabidopsi... 122 1e-26 tr|Q287V5|Q287V5_9BRAS Actin-related protein 6 OS=Capsella rubel... 122 1e-26 tr|B6TWX2|B6TWX2_MAIZE Actin-like protein arp6 OS=Zea mays PE=2 ... 122 1e-26 tr|B5B3X5|B5B3X5_PHYPA Actin-related protein 6 OS=Physcomitrella... 115 2e-24 tr|Q7ZV86|Q7ZV86_DANRE ARP6 actin-related protein 6 homolog (Yea... 86 1e-15 tr|Q28HE6|Q28HE6_XENTR ARP6 actin-related protein 6 homolog OS=X... 82 1e-14 tr|Q4TBH5|Q4TBH5_TETNG Chromosome 13 SCAF7124, whole genome shot... 81 3e-14 tr|A2VDB7|A2VDB7_XENLA LOC100037212 protein OS=Xenopus laevis GN... 81 3e-14 tr|B2RYQ1|B2RYQ1_RAT ARP6 actin-related protein 6 homolog (Yeast... 80 5e-14 tr|A6H7G6|A6H7G6_BOVIN ACTR6 protein OS=Bos taurus GN=ACTR6 PE=2... 79 1e-13 tr|Q7Z4D2|Q7Z4D2_HUMAN MSTP136 OS=Homo sapiens PE=2 SV=1 79 1e-13 tr|Q53GH2|Q53GH2_HUMAN ARP6 actin-related protein 6 homolog (Fra... 79 1e-13 tr|B3KW37|B3KW37_HUMAN cDNA FLJ42081 fis, clone TBAES2000004, hi... 79 1e-13 tr|Q54KZ7|Q54KZ7_DICDI Actin related protein 6 OS=Dictyostelium ... 78 2e-13 tr|B6LXB5|B6LXB5_BRAFL Putative uncharacterized protein OS=Branc... 78 2e-13 tr|B3SC04|B3SC04_TRIAD Putative uncharacterized protein OS=Trich... 78 3e-13 tr|A7SYR0|A7SYR0_NEMVE Predicted protein OS=Nematostella vectens... 77 4e-13 tr|B6PKG5|B6PKG5_BRAFL Putative uncharacterized protein OS=Branc... 77 7e-13 tr|Q9XZB9|Q9XZB9_OXYNO Actin OS=Oxytricha nova PE=3 SV=1 75 3e-12 tr|Q6WMS6|Q6WMS6_BRABE Actin-related protein 6 OS=Branchiostoma ... 75 3e-12 tr|Q4UGT7|Q4UGT7_THEAN Actin-related protein, putative OS=Theile... 74 6e-12 tr|Q4N8V8|Q4N8V8_THEPA Putative uncharacterized protein OS=Theil... 70 5e-11 tr|B0DKF0|B0DKF0_LACBS Actin-1 OS=Laccaria bicolor (strain S238N... 70 8e-11 tr|B4ZFL1|B4ZFL1_AMPCA Actin (Fragment) OS=Amphidinium carterae ... 69 1e-10 tr|Q9NA98|Q9NA98_CAEEL Protein Y53F4B.22, confirmed by transcrip... 69 1e-10 tr|Q4CS91|Q4CS91_TRYCR Actin-related protein 3, putative OS=Tryp... 69 1e-10 tr|Q1HMJ5|Q1HMJ5_TRYCR Actin-related protein 3 OS=Trypanosoma cr... 69 1e-10
>tr|A7PF62|A7PF62_VITVI Chromosome chr11 scaffold_13, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00016923001 PE=3 SV=1 Length = 426
Score = 124 bits (310), Expect = 4e-27 Identities = 54/96 (56%), Positives = 75/96 (78%) Frame = +1
Query: 7 LRKVSACHRDLQALLYKSVVLTGGTTKLPGFKERLELELRPMVPAEYDLKVHALDNPIVA 186 +R V++CH DL +LY+S++LTGG+T P F +RLE+ELRP+VP +Y +K+ ++PI+ Sbjct: 329 IRAVNSCHPDLHPVLYQSIILTGGSTLFPQFAQRLEMELRPLVPDDYQVKITTQEDPILG 388
Query: 187 PWRGGSLFASSEEFESCSITKGEYEELGSLRCRRRF 294 WRGGSL ASS +FE+ +TK EYEELGS RCR+RF Sbjct: 389 VWRGGSLLASSPDFEAMCVTKSEYEELGSARCRKRF 424
>tr|Q287V0|Q287V0_CARAS Actin-related protein 6 OS=Cardaminopsis arenosa GN=Aa_33520 PE=3 SV=1 Length = 420
Score = 123 bits (308), Expect = 6e-27 Identities = 56/96 (58%), Positives = 74/96 (77%) Frame = +1
Query: 7 LRKVSACHRDLQALLYKSVVLTGGTTKLPGFKERLELELRPMVPAEYDLKVHALDNPIVA 186 +R +++CH LQ +LY+S++LTGG+T P KERLE ELRP+VP +D+K+ ++PI+ Sbjct: 323 VRAINSCHSCLQPVLYQSIILTGGSTLFPQLKERLEGELRPLVPDHFDVKITTQEDPILG 382
Query: 187 PWRGGSLFASSEEFESCSITKGEYEELGSLRCRRRF 294 WRGGSL ASS +FES +TK EYEELGS RCRRRF Sbjct: 383 VWRGGSLLASSPDFESMCVTKAEYEELGSARCRRRF 418
>tr|A9PH83|A9PH83_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 424
Score = 123 bits (308), Expect = 6e-27 Identities = 56/96 (58%), Positives = 74/96 (77%) Frame = +1
Query: 7 LRKVSACHRDLQALLYKSVVLTGGTTKLPGFKERLELELRPMVPAEYDLKVHALDNPIVA 186 +R V++CH L LLY+S++LTGG+T P F ERLE+ELRP+VP +Y +K+ ++PI+ Sbjct: 327 VRAVNSCHPLLHPLLYQSIILTGGSTLFPRFAERLEMELRPLVPDDYQVKITTQEDPILG 386
Query: 187 PWRGGSLFASSEEFESCSITKGEYEELGSLRCRRRF 294 WRGGSL ASS +FE+ +TK EYEELGS RCRRRF Sbjct: 387 VWRGGSLLASSPDFEAMCVTKAEYEELGSARCRRRF 422
>tr|Q287X0|Q287X0_OLIPU Actin-related protein 6 OS=Olimarabidopsis pumila GN=Op_33520 PE=3 SV=1 Length = 423
Score = 122 bits (306), Expect = 1e-26 Identities = 57/96 (59%), Positives = 73/96 (76%) Frame = +1
Query: 7 LRKVSACHRDLQALLYKSVVLTGGTTKLPGFKERLELELRPMVPAEYDLKVHALDNPIVA 186 +R VS+CH LQ +LY+S++LTGG+T P KERLE ELRP+VP +D+K+ ++PI+ Sbjct: 326 VRAVSSCHSYLQPVLYQSIILTGGSTLFPQLKERLEGELRPLVPDHFDVKITTQEDPILG 385
Query: 187 PWRGGSLFASSEEFESCSITKGEYEELGSLRCRRRF 294 WRGGSL ASS +FES +TK EYEEL S RCRRRF Sbjct: 386 VWRGGSLLASSPDFESICVTKAEYEELASARCRRRF 421
>tr|Q287V5|Q287V5_9BRAS Actin-related protein 6 OS=Capsella rubella GN=Cr_33520 PE=3 SV=1 Length = 423
Score = 122 bits (306), Expect = 1e-26 Identities = 56/96 (58%), Positives = 74/96 (77%) Frame = +1
Query: 7 LRKVSACHRDLQALLYKSVVLTGGTTKLPGFKERLELELRPMVPAEYDLKVHALDNPIVA 186 +R +S+CH LQ +LY+S++LTGG+T P K+RLE ELRP+VP +D+K+ ++PI+ Sbjct: 326 VRAISSCHSYLQPVLYQSIILTGGSTLFPQLKDRLEGELRPLVPDHFDVKITTQEDPILG 385
Query: 187 PWRGGSLFASSEEFESCSITKGEYEELGSLRCRRRF 294 WRGGSL ASS +FES +TK EYEELGS RCRRRF Sbjct: 386 VWRGGSLLASSPDFESMCVTKTEYEELGSARCRRRF 421
>tr|B6TWX2|B6TWX2_MAIZE Actin-like protein arp6 OS=Zea mays PE=2 SV=1 Length = 455
Score = 122 bits (306), Expect = 1e-26 Identities = 57/96 (59%), Positives = 72/96 (75%) Frame = +1
Query: 7 LRKVSACHRDLQALLYKSVVLTGGTTKLPGFKERLELELRPMVPAEYDLKVHALDNPIVA 186 +R V ACH LQ +L++S++LTGG+T P F ERLE ELRP+VP +Y +K+ +NPI Sbjct: 333 VRAVQACHPYLQPVLFESIILTGGSTLFPRFTERLERELRPLVPDDYKVKITRQENPIFG 392
Query: 187 PWRGGSLFASSEEFESCSITKGEYEELGSLRCRRRF 294 WRGGS+ ASS +FES ITK EYEE+GS RCRRRF Sbjct: 393 VWRGGSILASSPDFESMCITKSEYEEMGSARCRRRF 428
>tr|B5B3X5|B5B3X5_PHYPA Actin-related protein 6 OS=Physcomitrella patens GN=ARP6 PE=2 SV=1 Length = 446
Score = 115 bits (287), Expect = 2e-24 Identities = 52/98 (53%), Positives = 74/98 (75%) Frame = +1
Query: 7 LRKVSACHRDLQALLYKSVVLTGGTTKLPGFKERLELELRPMVPAEYDLKVHALDNPIVA 186 +R ++AC +L ALLY+SV+LTGG T LPGFK RLE ELRP+V ++++ + +D PI+A Sbjct: 349 VRAINACEPELHALLYQSVLLTGGNTLLPGFKNRLEHELRPLVTDDFNINIEIVDCPILA 408
Query: 187 PWRGGSLFASSEEFESCSITKGEYEELGSLRCRRRFMR 300 W+G SL A+ EF + ++TK EYEE G+LRCR+RF + Sbjct: 409 AWKGASLMAARPEFHTWAVTKAEYEEDGTLRCRQRFQK 446
>tr|Q7ZV86|Q7ZV86_DANRE ARP6 actin-related protein 6 homolog (Yeast) OS=Danio rerio GN=actr6 PE=2 SV=1 Length = 396
Score = 85.5 bits (210), Expect = 1e-15 Identities = 37/87 (42%), Positives = 55/87 (63%) Frame = +1
Query: 34 DLQALLYKSVVLTGGTTKLPGFKERLELELRPMVPAEYDLKVHALDNPIVAPWRGGSLFA 213 ++Q YK++VLTGG T PGF++R+ E+R + P EYD+ V +NPI W GG L A Sbjct: 308 EMQPHFYKNIVLTGGNTLFPGFRDRVYKEVRALAPVEYDVSVVLPNNPICYSWEGGKLLA 367
Query: 214 SSEEFESCSITKGEYEELGSLRCRRRF 294 + +FE ++T+ +YEE G C +F Sbjct: 368 ENPDFEEMAVTRDDYEENGHYICEEKF 394
>tr|Q28HE6|Q28HE6_XENTR ARP6 actin-related protein 6 homolog OS=Xenopus tropicalis GN=actr6 PE=2 SV=1 Length = 396
Score = 82.4 bits (202), Expect = 1e-14 Identities = 34/87 (39%), Positives = 56/87 (64%) Frame = +1
Query: 34 DLQALLYKSVVLTGGTTKLPGFKERLELELRPMVPAEYDLKVHALDNPIVAPWRGGSLFA 213 ++Q YK++VLTGG T PGF+ER+ E+R + P ++D+ V +NPI W GG + + Sbjct: 308 EMQPHFYKNIVLTGGNTLFPGFRERVFSEVRKLTPTDFDVSVILPENPISYAWEGGKIIS 367
Query: 214 SSEEFESCSITKGEYEELGSLRCRRRF 294 +++FE +T+ +YEE G + C +F Sbjct: 368 ENDDFEDMVVTREDYEENGHIICEEKF 394
>tr|Q4TBH5|Q4TBH5_TETNG Chromosome 13 SCAF7124, whole genome shotgun sequence. (Fragment) OS=Tetraodon nigroviridis GN=GSTENG00003756001 PE=3 SV=1 Length = 424
Score = 81.3 bits (199), Expect = 3e-14 Identities = 37/93 (39%), Positives = 55/93 (59%) Frame = +1
Query: 16 VSACHRDLQALLYKSVVLTGGTTKLPGFKERLELELRPMVPAEYDLKVHALDNPIVAPWR 195 + + ++Q Y+++VLTGG T PGF++RLE ELR +VPA + V NPI W Sbjct: 331 IQSLPEEMQPHFYQNIVLTGGNTLFPGFRKRLEAELRSLVPAHLPVSVLLPQNPICYSWE 390
Query: 196 GGSLFASSEEFESCSITKGEYEELGSLRCRRRF 294 GG L A S +++ +T+ +YEE G C +F Sbjct: 391 GGKLLAHSPDYDEIVVTREDYEENGHCICEEKF 423
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