BP912207
Clone id YMU001_000016_D04
Library
Length 249
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000016_D04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
GCATATGGGGATGGACTTGCAAAAGTAAGCCGTCCCCGCTCCAATACAAGCAAGAATGGC
TTACAGCTACAAAGGAATACAAATGGTTGCTCGCTAAAATCATCTAACCCACGGCATGTG
CTACCGTATGTGGGAGAAGTCAGGCACGGATCAAAGTAGCTTTGGAGCTGTGTTGCACAC
ATGCTTCTGTGAGTATGGCATGCACAAAGCTTTATGTGCTGACTTCATTTTGCCCCAGGT
TCACACTGT
■■Homology search results ■■ -
sp_hit_id O75445
Definition sp|O75445|USH2A_HUMAN Usherin OS=Homo sapiens
Align length 59
Score (bit) 30.4
E-value 2.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912207|Adiantum capillus-veneris mRNA, clone:
YMU001_000016_D04.
(249 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|O75445|USH2A_HUMAN Usherin OS=Homo sapiens GN=USH2A PE=1 SV=3 30 2.9
sp|Q9I8S4|DCOR2_XENLA Ornithine decarboxylase 2 OS=Xenopus laevi... 29 8.3

>sp|O75445|USH2A_HUMAN Usherin OS=Homo sapiens GN=USH2A PE=1 SV=3
Length = 5202

Score = 30.4 bits (67), Expect = 2.9
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
Frame = -2

Query: 206 CACHTHRSMCATQLQSYFDPCLTSP---TYGSTC-RGLDDFSEQPF-----VFLCSCKP 57
C CH H C T Q Y CL S T G C R L ++++PF V+ +CKP
Sbjct: 518 CQCHGHADNCDTTSQPY--RCLCSQESFTEGLHCDRCLPLYNDKPFRQGDQVYAFNCKP 574


>sp|Q9I8S4|DCOR2_XENLA Ornithine decarboxylase 2 OS=Xenopus laevis
GN=odc1-B PE=2 SV=1
Length = 456

Score = 28.9 bits (63), Expect = 8.3
Identities = 19/65 (29%), Positives = 27/65 (41%)
Frame = -2

Query: 197 HTHRSMCATQLQSYFDPCLTSPTYGSTCRGLDDFSEQPFVFLCSCKPFLLVLERGRLTFA 18
H H + S P TS +G TC GLD +E+ + +LL G T A
Sbjct: 330 HAHPKPILHKKPSPDQPLYTSSLWGPTCDGLDQIAERVQLPELHVGDWLLFENMGAYTIA 389

Query: 17 SPSPY 3
+ S +
Sbjct: 390 ASSNF 394


tr_hit_id Q1MTD2
Definition tr|Q1MTD2|Q1MTD2_DANRE Novel protein similar to vertebrate Usher syndrome 2A (Autosomal recessive, mild) (USH2A) OS=Danio rerio
Align length 44
Score (bit) 33.9
E-value 4.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912207|Adiantum capillus-veneris mRNA, clone:
YMU001_000016_D04.
(249 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q1MTD2|Q1MTD2_DANRE Novel protein similar to vertebrate Usher... 34 4.2
tr|Q008W4|Q008W4_CIOIN Gamma-carboxyglutamic acid protein 2 OS=C... 33 5.5

>tr|Q1MTD2|Q1MTD2_DANRE Novel protein similar to vertebrate Usher
syndrome 2A (Autosomal recessive, mild) (USH2A) OS=Danio
rerio GN=CH211-279E11.1-001 PE=4 SV=2
Length = 5236

Score = 33.9 bits (76), Expect = 4.2
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -2

Query: 206 CACHTHRSMCATQLQSYFDPCL-TSPTYGSTC-RGLDDFSEQPF 81
C CH H C T + Y CL S T+G+ C R + F+++PF
Sbjct: 530 CECHGHADSCDTSVSPYRCACLPESHTHGANCERCIPLFNDKPF 573


>tr|Q008W4|Q008W4_CIOIN Gamma-carboxyglutamic acid protein 2
OS=Ciona intestinalis PE=2 SV=1
Length = 1203

Score = 33.5 bits (75), Expect = 5.5
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Frame = -2

Query: 245 CEPGAK*SQHIKLCACHTHRSMCATQLQSYFDPCLTSPTYGS-TCRGLDDFSEQPFVFLC 69
CE G S H+ C T S +PC+TSP + + C D+S F C
Sbjct: 397 CENGGNCSDHVGFYTCACALEYEGTNCDSRINPCVTSPCFNNGVCAMNRDYS-----FNC 451

Query: 68 SC 63
SC
Sbjct: 452 SC 453