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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912213
Clone id YMU001_000016_D12
Library
Length 396
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000016_D12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ACATAATTTTGAAAAAAATGCACAATTATCAGGCTTGAGCAATGAGTTACAAGAGAGGGG
ATAAGCAACCCCTTCTTATTCTTTGGAAGATAAACAAGCACGCCAAAGAAGTATAATAAA
ACTTGTGCTTTGGGATACTTGTTTGACATGTGCCTCTGTGTAACAATCCCTCCATAAACC
CACATATGACCCCAGACATCAATGAGGCAGATCTCGACAGAAAGCTTCCTCACTCTGCCG
CCTATACGTTATTCATCTGAGTCGGATCCTGGATTTTCTCCACCTCGCCGAACACTACTC
TTCTTGCCCTTTACCCTTTGCATTGACATTTCTCCATCCAATGTCAACATGCTGGACTTT
GCCAGCCTCTCTTCCAGCTCCTCTGTAGTGAACTCA
■■Homology search results ■■ -
sp_hit_id O64628
Definition sp|O64628|TXND9_ARATH Thioredoxin domain-containing protein 9 homolog OS=Arabidopsis thaliana
Align length 47
Score (bit) 37.0
E-value 0.031
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912213|Adiantum capillus-veneris mRNA, clone:
YMU001_000016_D12.
         (396 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O64628|TXND9_ARATH Thioredoxin domain-containing protein 9 ho...    37   0.031
sp|Q11183|TXND9_CAEEL Thioredoxin domain-containing protein 9 ho...    33   0.34 
sp|Q5SSZ5|TENS3_MOUSE Tensin-3 OS=Mus musculus GN=Tns3 PE=1 SV=1       33   0.44 
sp|P69205|CH60_TROWT 60 kDa chaperonin OS=Tropheryma whipplei (s...    33   0.58 
sp|P69204|CH60_TROWH 60 kDa chaperonin OS=Tropheryma whipplei GN...    33   0.58 
sp|Q83NN0|CH60_TROW8 60 kDa chaperonin OS=Tropheryma whipplei (s...    33   0.58 
sp|Q93G07|CH60_LACAC 60 kDa chaperonin OS=Lactobacillus acidophi...    31   1.7  
sp|Q43298|CH62_MAIZE Chaperonin CPN60-2, mitochondrial OS=Zea ma...    31   2.2  
sp|Q0S3B9|CH602_RHOSR 60 kDa chaperonin 2 OS=Rhodococcus sp. (st...    31   2.2  
sp|A9HPH6|CH602_GLUDA 60 kDa chaperonin 2 OS=Gluconacetobacter d...    31   2.2  
sp|P29185|CH61_MAIZE Chaperonin CPN60-1, mitochondrial OS=Zea ma...    30   2.9  
sp|Q4JXN8|CH601_CORJK 60 kDa chaperonin 1 OS=Corynebacterium jei...    30   2.9  
sp|Q0AVV1|CH60_SYNWW 60 kDa chaperonin OS=Syntrophomonas wolfei ...    30   3.7  
sp|A6VM38|CH60_ACTSZ 60 kDa chaperonin OS=Actinobacillus succino...    30   3.7  
sp|A1T577|CH602_MYCVP 60 kDa chaperonin 2 OS=Mycobacterium vanba...    30   3.7  
sp|Q65VE4|CH60_MANSM 60 kDa chaperonin OS=Mannheimia succinicipr...    30   4.9  
sp|Q8X182|KATG_NEUCR Catalase-peroxidase OS=Neurospora crassa GN...    29   6.4  
sp|Q05045|CH61_CUCMA Chaperonin CPN60-1, mitochondrial OS=Cucurb...    29   6.4  
sp|A5VBQ6|CH60_SPHWW 60 kDa chaperonin OS=Sphingomonas wittichii...    29   6.4  
sp|Q0AS40|CH60_MARMM 60 kDa chaperonin OS=Maricaulis maris (stra...    29   6.4  
sp|B0USK6|CH60_HAES2 60 kDa chaperonin OS=Haemophilus somnus (st...    29   6.4  
sp|Q0I284|CH60_HAES1 60 kDa chaperonin OS=Haemophilus somnus (st...    29   6.4  
sp|P43733|CH60_HAEIN 60 kDa chaperonin OS=Haemophilus influenzae...    29   6.4  
sp|A5UH48|CH60_HAEIG 60 kDa chaperonin OS=Haemophilus influenzae...    29   6.4  
sp|A5U9V2|CH60_HAEIE 60 kDa chaperonin OS=Haemophilus influenzae...    29   6.4  
sp|Q4QN05|CH60_HAEI8 60 kDa chaperonin OS=Haemophilus influenzae...    29   6.4  
sp|Q8KIX3|CH60_BUCTC 60 kDa chaperonin OS=Buchnera aphidicola su...    29   6.4  
sp|Q0B1N7|CH603_BURCM 60 kDa chaperonin 3 OS=Burkholderia ambifa...    29   6.4  
sp|Q1GVZ9|CH601_SPHAL 60 kDa chaperonin 1 OS=Sphingopyxis alaske...    29   6.4  
sp|A6W5Y6|CH601_KINRD 60 kDa chaperonin 1 OS=Kineococcus radioto...    29   6.4  

>sp|O64628|TXND9_ARATH Thioredoxin domain-containing protein 9
           homolog OS=Arabidopsis thaliana GN=At2g18990 PE=2 SV=1
          Length = 211

 Score = 37.0 bits (84), Expect = 0.031
 Identities = 18/47 (38%), Positives = 29/47 (61%)
 Frame = -2

Query: 395 EFTTEELEERLAKSSMLTLDGEMSMQRVKGKKSSVRRGGENPGSDSD 255
           +F+TE+LEER+A++ ++  DGE S  + K      R   ++  SDSD
Sbjct: 163 DFSTEDLEERIARAQVIHYDGESSSLKPKSTTQVRRNVRQSARSDSD 209


>sp|Q11183|TXND9_CAEEL Thioredoxin domain-containing protein 9
           homolog OS=Caenorhabditis elegans GN=tag-170 PE=2 SV=1
          Length = 208

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = -2

Query: 395 EFTTEELEERLAKSSMLTLDGEMSMQRVKGKKSSVRRGGENPGSDSD 255
           EFTTE +E RLA+S +LT++          KK  +R G E   ++ D
Sbjct: 164 EFTTETMENRLARSEVLTVE---KKHTAPAKKKIIRSGVEEYDNEED 207


>sp|Q5SSZ5|TENS3_MOUSE Tensin-3 OS=Mus musculus GN=Tns3 PE=1 SV=1
          Length = 1440

 Score = 33.1 bits (74), Expect = 0.44
 Identities = 19/41 (46%), Positives = 24/41 (58%)
 Frame = -2

Query: 338 DGEMSMQRVKGKKSSVRRGGENPGSDSDE*RIGGRVRKLSV 216
           DG  S  R  G+  SV   G +PG   D+  IGGR+RKLS+
Sbjct: 731 DGVGSGLRCSGRLDSVDGPGRSPGRQGDD-PIGGRLRKLSI 770


>sp|P69205|CH60_TROWT 60 kDa chaperonin OS=Tropheryma whipplei
           (strain Twist) GN=groL PE=3 SV=1
          Length = 540

 Score = 32.7 bits (73), Expect = 0.58
 Identities = 17/55 (30%), Positives = 30/55 (54%)
 Frame = -2

Query: 365 LAKSSMLTLDGEMSMQRVKGKKSSVRRGGENPGSDSDE*RIGGRVRKLSVEICLI 201
           ++K     +DG  S  ++ G+ S +R+  EN  SD D  ++  R+ KLS  + +I
Sbjct: 323 VSKDETTIVDGAGSSDQIAGRVSQIRKELENSDSDYDREKLQERLAKLSGGVAVI 377


>sp|P69204|CH60_TROWH 60 kDa chaperonin OS=Tropheryma whipplei
           GN=groL PE=3 SV=1
          Length = 540

 Score = 32.7 bits (73), Expect = 0.58
 Identities = 17/55 (30%), Positives = 30/55 (54%)
 Frame = -2

Query: 365 LAKSSMLTLDGEMSMQRVKGKKSSVRRGGENPGSDSDE*RIGGRVRKLSVEICLI 201
           ++K     +DG  S  ++ G+ S +R+  EN  SD D  ++  R+ KLS  + +I
Sbjct: 323 VSKDETTIVDGAGSSDQIAGRVSQIRKELENSDSDYDREKLQERLAKLSGGVAVI 377


>sp|Q83NN0|CH60_TROW8 60 kDa chaperonin OS=Tropheryma whipplei
           (strain TW08/27) GN=groL PE=3 SV=1
          Length = 540

 Score = 32.7 bits (73), Expect = 0.58
 Identities = 17/55 (30%), Positives = 30/55 (54%)
 Frame = -2

Query: 365 LAKSSMLTLDGEMSMQRVKGKKSSVRRGGENPGSDSDE*RIGGRVRKLSVEICLI 201
           ++K     +DG  S  ++ G+ S +R+  EN  SD D  ++  R+ KLS  + +I
Sbjct: 323 VSKDETTIVDGAGSSDQIAGRVSQIRKELENSDSDYDREKLQERLAKLSGGVAVI 377


>sp|Q93G07|CH60_LACAC 60 kDa chaperonin OS=Lactobacillus acidophilus
           GN=groL PE=3 SV=2
          Length = 542

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 17/57 (29%), Positives = 31/57 (54%)
 Frame = -2

Query: 365 LAKSSMLTLDGEMSMQRVKGKKSSVRRGGENPGSDSDE*RIGGRVRKLSVEICLIDV 195
           + K S   +DG  S   +K ++ S+R+  E   SD D+ ++  R+ KL+  + +I V
Sbjct: 323 VTKDSTTIVDGAGSKDAIKEREDSIRKQIEESTSDFDKKKLQERLAKLTGGVAVIHV 379


>sp|Q43298|CH62_MAIZE Chaperonin CPN60-2, mitochondrial OS=Zea mays
           GN=CPN60II PE=2 SV=1
          Length = 576

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 15/59 (25%), Positives = 31/59 (52%)
 Frame = -2

Query: 365 LAKSSMLTLDGEMSMQRVKGKKSSVRRGGENPGSDSDE*RIGGRVRKLSVEICLIDVWG 189
           ++K   + LDG    + ++ +   +R   EN  SD D+ ++  R+ KLS  + ++ + G
Sbjct: 358 VSKDDTVILDGAGDKKSIEERADQIRSAVENSTSDYDKEKLQERLAKLSGGVAVLKIGG 416


>sp|Q0S3B9|CH602_RHOSR 60 kDa chaperonin 2 OS=Rhodococcus sp.
           (strain RHA1) GN=groL2 PE=3 SV=1
          Length = 537

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 17/57 (29%), Positives = 31/57 (54%)
 Frame = -2

Query: 365 LAKSSMLTLDGEMSMQRVKGKKSSVRRGGENPGSDSDE*RIGGRVRKLSVEICLIDV 195
           ++K     +DG  +   +KG+ + +RR  EN  SD D  ++  R+ KL+  + +I V
Sbjct: 323 VSKDETTIVDGAGTDDDIKGRVAQLRREIENTDSDWDREKLEERLAKLAGGVAVIKV 379


>sp|A9HPH6|CH602_GLUDA 60 kDa chaperonin 2 OS=Gluconacetobacter
           diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5)
           GN=groL2 PE=3 SV=1
          Length = 541

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = -2

Query: 359 KSSMLTLDGEMSMQRVKGKKSSVRRGGENPGSDSDE*RIGGRVRKLSVEICLIDVWG 189
           K +   +DGE     +KG+   +R   E   SD D  ++  R+ KL+  + +I V G
Sbjct: 327 KDNTTIVDGEGDADAIKGRVGQIRAQIEETTSDYDREKLQERLAKLAGGVAIIRVGG 383
tr_hit_id A9NNH2
Definition tr|A9NNH2|A9NNH2_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 52
Score (bit) 50.1
E-value 6.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912213|Adiantum capillus-veneris mRNA, clone:
YMU001_000016_D12.
         (396 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NNH2|A9NNH2_PICSI Putative uncharacterized protein OS=Picea...    50   6e-05
tr|A7QW72|A7QW72_VITVI Chromosome chr3 scaffold_199, whole genom...    44   0.005
tr|A5BWR2|A5BWR2_VITVI Putative uncharacterized protein OS=Vitis...    44   0.005
tr|A9PC45|A9PC45_POPTR Putative uncharacterized protein OS=Popul...    42   0.020
tr|B7FMC0|B7FMC0_MEDTR Putative uncharacterized protein OS=Medic...    40   0.058
tr|Q6YW09|Q6YW09_ORYSJ Os08g0250700 protein OS=Oryza sativa subs...    39   0.099
tr|A3BR71|A3BR71_ORYSJ Putative uncharacterized protein OS=Oryza...    39   0.099
tr|A2YT09|A2YT09_ORYSI Putative uncharacterized protein OS=Oryza...    39   0.099
tr|Q541V3|Q541V3_ARATH Putative ATP binding protein OS=Arabidops...    37   0.49 
tr|Q6LGT2|Q6LGT2_PHOPR Putative multidrug efflux RND transporter...    35   2.4  
tr|A1RH32|A1RH32_SHESW Transporter, hydrophobe/amphiphile efflux...    33   5.4  
tr|B7V501|B7V501_PSEAE Transporter, hydrophobe/amphiphile efflux...    33   5.4  
tr|B7D114|B7D114_9BURK Transporter, hydrophobe/amphiphile efflux...    33   5.4  
tr|Q9LSU4|Q9LSU4_ARATH Genomic DNA, chromosome 3, P1 clone: MWL2...    33   5.4  
tr|Q8L9H7|Q8L9H7_ARATH Putative ATP binding protein OS=Arabidops...    33   5.4  
tr|B3TP06|B3TP06_VIBAN GroEL OS=Vibrio anguillarum PE=4 SV=1           33   7.1  
tr|Q8GWR9|Q8GWR9_ARATH Putative uncharacterized protein At3g2558...    33   7.1  
tr|A9SSS0|A9SSS0_PHYPA Predicted protein OS=Physcomitrella paten...    33   7.1  
tr|A6X6A3|A6X6A3_OCHA4 Transporter, hydrophobe/amphiphile efflux...    33   9.2  
tr|Q7B852|Q7B852_TROWH 60 kDa chaperonin OS=Tropheryma whipplei ...    33   9.2  
tr|B7VHQ8|B7VHQ8_VIBSP 60 kDa chaperonin (Protein Cpn60) (GroEL ...    33   9.2  

>tr|A9NNH2|A9NNH2_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 217

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 26/52 (50%), Positives = 34/52 (65%), Gaps = 4/52 (7%)
 Frame = -2

Query: 395 EFTTEELEERLAKSSMLTLDGEMSMQRVKGKKS----SVRRGGENPGSDSDE 252
           EF+TEELEERLAKS ++  +GE S  R + K S    S+R+ G    SDSD+
Sbjct: 166 EFSTEELEERLAKSKIIVFEGESSASRFRSKVSSNNRSIRQSGNGDDSDSDD 217


>tr|A7QW72|A7QW72_VITVI Chromosome chr3 scaffold_199, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00007723001
           PE=4 SV=1
          Length = 238

 Score = 43.5 bits (101), Expect = 0.005
 Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
 Frame = -2

Query: 395 EFTTEELEERLAKSSMLTLDGEMSMQRVKGKKS--SVRRGGENPGSDSD 255
           EF+TEELEERLAK+ ++  +GE S+   K      SVR+   +  SDSD
Sbjct: 190 EFSTEELEERLAKAQVIIFEGESSLHASKSSSQPRSVRQSSNSYSSDSD 238


>tr|A5BWR2|A5BWR2_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_013928 PE=4 SV=1
          Length = 207

 Score = 43.5 bits (101), Expect = 0.005
 Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
 Frame = -2

Query: 395 EFTTEELEERLAKSSMLTLDGEMSMQRVKGKKS--SVRRGGENPGSDSD 255
           EF+TEELEERLAK+ ++  +GE S+   K      SVR+   +  SDSD
Sbjct: 159 EFSTEELEERLAKAQVIIFEGESSLHASKSSSQPRSVRQSSNSYSSDSD 207


>tr|A9PC45|A9PC45_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 213

 Score = 41.6 bits (96), Expect = 0.020
 Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
 Frame = -2

Query: 395 EFTTEELEERLAKSSMLTLDGEMSMQRVKGK---KSSVRRGGENPGSDSD 255
           EF TE+LEERLAK+ ++  +GE S+   K     + SVR+   +  SDSD
Sbjct: 164 EFNTEDLEERLAKAQVIFFEGESSLNSSKSSAQTRRSVRQSESHDSSDSD 213


>tr|B7FMC0|B7FMC0_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 213

 Score = 40.0 bits (92), Expect = 0.058
 Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
 Frame = -2

Query: 395 EFTTEELEERLAKSSMLTLDGEMSMQRVKG---KKSSVRRGGENPGSDSD 255
           +F+TE LEERLAK+ ++ L+GE S+ R +     K SVR+      SDS+
Sbjct: 164 DFSTEVLEERLAKAQVIFLEGESSIHRARSGAQTKRSVRQSTTADSSDSE 213


>tr|Q6YW09|Q6YW09_ORYSJ Os08g0250700 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0012K14.33 PE=2 SV=1
          Length = 210

 Score = 39.3 bits (90), Expect = 0.099
 Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
 Frame = -2

Query: 395 EFTTEELEERLAKSSMLTLDGEMSMQRVK-GKKSSVRRGGENPGSDSD 255
           +F+TE+LEERLAK+ ++ LDGE      K   K SVR+      SDS+
Sbjct: 163 DFSTEDLEERLAKAQVIFLDGEGPAHASKQATKRSVRQSDTGNSSDSE 210


>tr|A3BR71|A3BR71_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_025543 PE=4 SV=1
          Length = 112

 Score = 39.3 bits (90), Expect = 0.099
 Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
 Frame = -2

Query: 395 EFTTEELEERLAKSSMLTLDGEMSMQRVK-GKKSSVRRGGENPGSDSD 255
           +F+TE+LEERLAK+ ++ LDGE      K   K SVR+      SDS+
Sbjct: 65  DFSTEDLEERLAKAQVIFLDGEGPAHASKQATKRSVRQSDTGNSSDSE 112


>tr|A2YT09|A2YT09_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_28462 PE=4 SV=1
          Length = 190

 Score = 39.3 bits (90), Expect = 0.099
 Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
 Frame = -2

Query: 395 EFTTEELEERLAKSSMLTLDGEMSMQRVK-GKKSSVRRGGENPGSDSD 255
           +F+TE+LEERLAK+ ++ LDGE      K   K SVR+      SDS+
Sbjct: 143 DFSTEDLEERLAKAQVIFLDGEGPAHASKQATKRSVRQSDTGNSSDSE 190


>tr|Q541V3|Q541V3_ARATH Putative ATP binding protein OS=Arabidopsis
           thaliana GN=At2g18990 PE=2 SV=1
          Length = 211

 Score = 37.0 bits (84), Expect = 0.49
 Identities = 18/47 (38%), Positives = 29/47 (61%)
 Frame = -2

Query: 395 EFTTEELEERLAKSSMLTLDGEMSMQRVKGKKSSVRRGGENPGSDSD 255
           +F+TE+LEER+A++ ++  DGE S  + K      R   ++  SDSD
Sbjct: 163 DFSTEDLEERIARAQVIHYDGESSSLKPKSTTQVRRNVRQSARSDSD 209


>tr|Q6LGT2|Q6LGT2_PHOPR Putative multidrug efflux RND transporter MexF
            OS=Photobacterium profundum GN=R00426 PE=4 SV=1
          Length = 1044

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 29/96 (30%), Positives = 40/96 (41%)
 Frame = +2

Query: 59   G*ATPSYSLEDKQARQRSIIKLVLWDTCLTCASV*QSLHKPTYDPRHQ*GRSRQKASSLC 238
            G A P YS +  QA    ++K  L D           +H    D  +Q     Q  +   
Sbjct: 837  GAAAPGYSSDQAQAAMIEVLKTHLQD----------GMHYEWTDVVYQ-----QIIAGNT 881

Query: 239  RLYVIHLSRILDFLHLAEHYSSCPLPFALTFLHPMS 346
             +Y+  L  IL FL LA  Y S  LP A+  + PM+
Sbjct: 882  MIYIFPLVIILVFLVLAAQYESLKLPMAIILIVPMT 917