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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912220
Clone id YMU001_000016_E08
Library
Length 357
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000016_E08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTACGATGGAGACCCCCTCAGC
AAGAGCCTTCTCTCGCATGCTCACAATCATAGTGGTGTGCCTGCTATCTCTTTGTGTAGC
CATGGTGCATGCAACAGATGAGGTGGATGCACCCGCACCGGCACCGATGCAGCCGGAGAG
TGCATCACCCCCAACCGTACTCACATTGTGCGCCCCTGTGGTCCTCTCATTGGTGGCTTT
CATCTTCATGCAGTCCTACCATCATTGAGATACCAACATCAAGCTCTTCATATAAGTCTC
TGGTTCATTTTGTAGCCAAAGCTTCTTATCCTAATACCAATATTTAAGAGCTAATAC
■■Homology search results ■■ -
sp_hit_id P23803
Definition sp|P23803|ODD_DROME Protein odd-skipped OS=Drosophila melanogaster
Align length 25
Score (bit) 32.0
E-value 1.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912220|Adiantum capillus-veneris mRNA, clone:
YMU001_000016_E08.
         (357 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P23803|ODD_DROME Protein odd-skipped OS=Drosophila melanogast...    32   1.0  
sp|Q8S2W4|AGP23_ARATH Arabinogalactan peptide 23 OS=Arabidopsis ...    30   2.9  
sp|Q8XRH0|FTSK1_RALSO DNA translocase ftsK 1 OS=Ralstonia solana...    30   3.8  
sp|Q9JJC8|NIPA2_MOUSE Non-imprinted in Prader-Willi/Angelman syn...    30   5.0  
sp|Q5PP12|AGP24_ARATH Arabinogalactan peptide 24 OS=Arabidopsis ...    29   6.5  
sp|Q9LVC0|AGP14_ARATH Arabinogalactan peptide 14 OS=Arabidopsis ...    29   6.5  
sp|Q8IWU2|LMTK2_HUMAN Serine/threonine-protein kinase LMTK2 OS=H...    29   8.5  

>sp|P23803|ODD_DROME Protein odd-skipped OS=Drosophila melanogaster
           GN=odd PE=1 SV=3
          Length = 392

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 132 QQMRWMHPHRHRCSRRVHHPQPYSH 206
           QQ +  HPH H      HHP P+ H
Sbjct: 144 QQQQQQHPHHHHHHGHPHHPHPHPH 168


>sp|Q8S2W4|AGP23_ARATH Arabinogalactan peptide 23 OS=Arabidopsis
           thaliana GN=AGP23 PE=3 SV=2
          Length = 61

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +2

Query: 95  VCLLSLCVAMVHATDEVDAPAPAPMQPESASPPTVLTLCAPVVLSLVAF 241
           V   +  +  V A +EV APAP P    SA+ P + +L    ++SL ++
Sbjct: 10  VLFAAASMTAVMAAEEVGAPAPGPASAASAALPALGSLVGASLVSLFSY 58


>sp|Q8XRH0|FTSK1_RALSO DNA translocase ftsK 1 OS=Ralstonia
           solanacearum GN=ftsK1 PE=3 SV=1
          Length = 959

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = +2

Query: 140 EVDAPAPAPMQPESASPPTV 199
           E DAPA AP +P   SPPTV
Sbjct: 281 EPDAPASAPPEPAEPSPPTV 300


>sp|Q9JJC8|NIPA2_MOUSE Non-imprinted in Prader-Willi/Angelman
           syndrome region protein 2 homolog OS=Mus musculus
           GN=Nipa2 PE=2 SV=1
          Length = 359

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
 Frame = +2

Query: 98  CLLSLC---VAMVHATDEVDAPAPAPMQPESASPPTVLTLCAPVVLSLVAFIFMQSYHH* 268
           CLLS+    V ++HA  E +      M  +   P  V+     V+++L+ FIF+    H 
Sbjct: 116 CLLSILGSTVMVIHAPKEEEIETLNEMSHKLGDPGFVVFATFVVIVALI-FIFVVGPRHG 174

Query: 269 DTNIKLFI 292
            TNI ++I
Sbjct: 175 QTNILVYI 182


>sp|Q5PP12|AGP24_ARATH Arabinogalactan peptide 24 OS=Arabidopsis
           thaliana GN=AGP24 PE=3 SV=1
          Length = 69

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +2

Query: 86  IIVVCLLS-LCVAMVHATDEVDAPAPAPMQPESASPPTVLTLCAPVVLSLVAFI 244
           I VVCLL+ + V   H      APAPAP    S++  +   +   + ++ VA +
Sbjct: 11  IAVVCLLATMAVVSAHEGHHHHAPAPAPGPASSSTVVSATNMFTVLAIAAVALV 64


>sp|Q9LVC0|AGP14_ARATH Arabinogalactan peptide 14 OS=Arabidopsis
           thaliana GN=AGP14 PE=1 SV=1
          Length = 60

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +2

Query: 74  RMLTIIVVCLLSLCVAMVHAT-DEVDAPAPAPMQPESASPPTVLTLCAPVVLSLVAFIF 247
           +M   +VV +  +  + VH T   VDAPAP+P    S+  PT     A V +    F F
Sbjct: 5   KMKLYVVVLVAVIAFSTVHQTVAAVDAPAPSPTSDASSFIPTFF---ASVAVMAFGFFF 60


>sp|Q8IWU2|LMTK2_HUMAN Serine/threonine-protein kinase LMTK2 OS=Homo
           sapiens GN=LMTK2 PE=1 SV=2
          Length = 1503

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 20/76 (26%), Positives = 27/76 (35%), Gaps = 19/76 (25%)
 Frame = +2

Query: 47  ETPSARAFSRMLTIIVVCLLSLCVAMV-------------------HATDEVDAPAPAPM 169
           E P A   S    I+ VC L + + ++                   +  DE+D   PA  
Sbjct: 36  EAPPAAEVSSSFVILCVCSLIILIVLIANCVSCCKDPEIDFKEFEDNFDDEIDFTPPAED 95

Query: 170 QPESASPPTVLTLCAP 217
            P   SP  V TL  P
Sbjct: 96  TPSVQSPAEVFTLSVP 111
tr_hit_id B8AA92
Definition tr|B8AA92|B8AA92_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica
Align length 68
Score (bit) 36.2
E-value 0.85
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912220|Adiantum capillus-veneris mRNA, clone:
YMU001_000016_E08.
         (357 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8AA92|B8AA92_ORYSI Putative uncharacterized protein OS=Oryza...    36   0.85 
tr|B8IP45|B8IP45_METNO LPXTG-motif cell wall anchor domain prote...    35   1.5  
tr|B1K2Z7|B1K2Z7_BURCC Putative esterase OS=Burkholderia cenocep...    33   5.5  
tr|B2VZV5|B2VZV5_PYRTR Rho GAP domain containing protein OS=Pyre...    33   5.5  
tr|Q2W6I7|Q2W6I7_MAGMM Putative uncharacterized protein OS=Magne...    33   7.2  
tr|A9P9V8|A9P9V8_POPTR Putative uncharacterized protein OS=Popul...    33   7.2  

>tr|B8AA92|B8AA92_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_02431 PE=4 SV=1
          Length = 62

 Score = 36.2 bits (82), Expect = 0.85
 Identities = 26/68 (38%), Positives = 33/68 (48%)
 Frame = +2

Query: 59  ARAFSRMLTIIVVCLLSLCVAMVHATDEVDAPAPAPMQPESASPPTVLTLCAPVVLSLVA 238
           A A S+ L I+ V    L VA + A    DAPAP+   P SA+      L A +V S  A
Sbjct: 2   AAAGSKALAILAV----LAVAAISAVSAADAPAPS---PTSAACAAATPLAAALVASAAA 54

Query: 239 FIFMQSYH 262
           F+F    H
Sbjct: 55  FLFAAIRH 62


>tr|B8IP45|B8IP45_METNO LPXTG-motif cell wall anchor domain protein
           OS=Methylobacterium nodulans ORS 2060 GN=Mnod_5519 PE=4
           SV=1
          Length = 725

 Score = 35.4 bits (80), Expect = 1.5
 Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 5/36 (13%)
 Frame = +2

Query: 152 PAPAPMQPESASPPTVL-----TLCAPVVLSLVAFI 244
           PAPA  +PE  +PP  L      LCAP++L LVA++
Sbjct: 5   PAPAAARPEPCAPPAALLHRALALCAPLLLGLVAWL 40


>tr|B1K2Z7|B1K2Z7_BURCC Putative esterase OS=Burkholderia
           cenocepacia (strain MC0-3) GN=Bcenmc03_5695 PE=4 SV=1
          Length = 317

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = +2

Query: 95  VCLLSLCVAMVHATDEVDAPAPAPMQPESASPPTVLTLCAP 217
           + LL+  +A  HAT    APA AP  P S +PP V T   P
Sbjct: 12  LALLAGAIATAHATPPAQAPAAAP--PASPAPPAVQTATTP 50


>tr|B2VZV5|B2VZV5_PYRTR Rho GAP domain containing protein
           OS=Pyrenophora tritici-repentis (strain Pt-1C-BFP)
           GN=PTRG_02945 PE=4 SV=1
          Length = 1560

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
 Frame = +2

Query: 116 VAMVHAT-----DEVDAPAPAPMQPESASPPTVLTLCAPVVLS 229
           ++++HAT     D  D+P+P P+ P   +PP  L L  P+  S
Sbjct: 454 ISLIHATPIVGSDGFDSPSPKPVHPMRKAPPAPLNLSKPMTTS 496


>tr|Q2W6I7|Q2W6I7_MAGMM Putative uncharacterized protein
           OS=Magnetospirillum magneticum (strain AMB-1 / ATCC
           700264) GN=amb1734 PE=4 SV=1
          Length = 193

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +2

Query: 116 VAMVHATDEVDAPAPAPMQPESASPPTVLTL 208
           VA V    E+  P PAPM P +A+PP VL L
Sbjct: 116 VAPVDQVPELPEPEPAPMPPPNAAPPWVLPL 146


>tr|A9P9V8|A9P9V8_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=4 SV=1
          Length = 64

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +2

Query: 83  TIIVVCLLSLCVAMVHATDEVDAPAPAPMQPESASPPTVLTLCAPVVLSL 232
           T+I V  L+  V  VHA   + APAPAP    +   P++ ++    ++SL
Sbjct: 7   TLIAVLALAFTVLSVHAAAPMSAPAPAPTAAAAGIYPSLGSVFVAAIVSL 56