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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912223
Clone id YMU001_000016_E11
Library
Length 578
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000016_E11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AATTGCGCATGTGAGGCTAACCAGAGGTCGGTTTTCTGAGGTGGCTAGCAAAGGTTCAGG
CAACTGTAGCCGTCAAATGTTATGGCACTGTTTGTTGCTAGGAGTTCAAGCATTTGAATT
GTGCGGGAGATCTACCATTATCTTTTGGTTCTCTGTGCTGGACTCTGGAGAGTGCAGTAG
ATCTGTCCACATGGGCGCCCTTGATAATTGAGATTCGCTTGTTTCTGAAAAGTTACAATA
TGCAAAGAACCGATTTGGCAATTAGGTTGCAGTACGTTGCCTTCTGGGTCCACAGAAAAA
ATGGTTTTCGTGTGATGATTTGCGGCAGGGCACATTTTCACATTGTTAACAAGAGTTACA
TCTCAAAGTCATCACGGTTATTTTCTTGATTGATCAAATGGAGGTAATTGAAGAGCATGA
AGTCTTTATTCTAGCTGAACGAAAGATGTACGAGGAGATGTGCCGCAAACTTGCATTGCT
TGTGCAGAAGATCTTAGATGTCTTTCCTACACTCGAGGCATTACAGCCTGAGAAGTCTGG
CATGCAAGCTTTATGCGAAGTGCAGTGGGCGGTGGACA
■■Homology search results ■■ -
sp_hit_id Q9CAG5
Definition sp|Q9CAG5|PUB7_ARATH U-box domain-containing protein 7 OS=Arabidopsis thaliana
Align length 62
Score (bit) 49.7
E-value 1.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912223|Adiantum capillus-veneris mRNA, clone:
YMU001_000016_E11.
         (578 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9CAG5|PUB7_ARATH U-box domain-containing protein 7 OS=Arabid...    50   1e-05
sp|O48700|PUB6_ARATH U-box domain-containing protein 6 OS=Arabid...    48   4e-05
sp|Q9C7G1|PUB45_ARATH U-box domain-containing protein 45 OS=Arab...    46   1e-04
sp|Q3KKZ3|SECA_CHLTA Protein translocase subunit secA OS=Chlamyd...    31   5.1  

>sp|Q9CAG5|PUB7_ARATH U-box domain-containing protein 7
           OS=Arabidopsis thaliana GN=PUB7 PE=1 SV=1
          Length = 782

 Score = 49.7 bits (117), Expect = 1e-05
 Identities = 24/62 (38%), Positives = 44/62 (70%), Gaps = 2/62 (3%)
 Frame = +2

Query: 398 MEVIE-EHEVFILAERKMYEEMCRKLALLVQKILDVFPTLEALQP-EKSGMQALCEVQWA 571
           M+V E E  +F  ++ K++ +MC++L+ ++ K+L +FP+LE  +P  KSG+QALC +  A
Sbjct: 1   MDVTELEENLFAASDAKLHGDMCKELSGVLCKVLSIFPSLEGARPRSKSGIQALCSLHIA 60

Query: 572 VD 577
           ++
Sbjct: 61  LE 62


>sp|O48700|PUB6_ARATH U-box domain-containing protein 6
           OS=Arabidopsis thaliana GN=PUB6 PE=2 SV=2
          Length = 771

 Score = 47.8 bits (112), Expect = 4e-05
 Identities = 23/62 (37%), Positives = 42/62 (67%), Gaps = 2/62 (3%)
 Frame = +2

Query: 398 MEVIE-EHEVFILAERKMYEEMCRKLALLVQKILDVFPTLEALQP-EKSGMQALCEVQWA 571
           M+V E E  +F  ++ K++ +MC++L+ +  K+L +FP+LE  +P  KSG+Q LC +  A
Sbjct: 1   MDVSELEENLFAASDAKLHGDMCKELSAVYCKVLSIFPSLEEARPRSKSGIQTLCSLHIA 60

Query: 572 VD 577
           ++
Sbjct: 61  LE 62


>sp|Q9C7G1|PUB45_ARATH U-box domain-containing protein 45
           OS=Arabidopsis thaliana GN=PUB45 PE=2 SV=1
          Length = 768

 Score = 46.2 bits (108), Expect = 1e-04
 Identities = 24/57 (42%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
 Frame = +2

Query: 398 MEVIE-EHEVFILAERKMYEEMCRKLALLVQKILDVFPTLEALQP-EKSGMQALCEV 562
           M+V E E   F   + K++ +MC  L+++  KI+ +FP+LEA +P  KSG+QALC +
Sbjct: 1   MDVNEVEENFFAPGDAKLHGKMCNALSVIYCKIMSIFPSLEAARPRSKSGIQALCSL 57


>sp|Q3KKZ3|SECA_CHLTA Protein translocase subunit secA OS=Chlamydia
           trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=secA
           PE=3 SV=1
          Length = 969

 Score = 30.8 bits (68), Expect = 5.1
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = +2

Query: 455 EMCRKLALLVQKILDVFPTLEALQPEKSGMQAL---CEVQWAV 574
           EMC  +A+  +K+LD F   + L  +K  M+A+   C   W V
Sbjct: 265 EMCNHIAIEARKVLDPFLGTDVLPKDKKVMEAISEACRALWLV 307
tr_hit_id A7QBN6
Definition tr|A7QBN6|A7QBN6_VITVI Chromosome chr1 scaffold_75, whole genome shotgun sequence OS=Vitis vinifera
Align length 56
Score (bit) 51.2
E-value 4.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912223|Adiantum capillus-veneris mRNA, clone:
YMU001_000016_E11.
         (578 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7QBN6|A7QBN6_VITVI Chromosome chr1 scaffold_75, whole genome...    51   4e-05
tr|A5C9K5|A5C9K5_VITVI Putative uncharacterized protein OS=Vitis...    51   4e-05
tr|Q7F1X9|Q7F1X9_ORYSJ B1065G12.5 protein OS=Oryza sativa subsp....    40   0.071
tr|Q5N8V2|Q5N8V2_ORYSJ cDNA clone:J033030O21, full insert sequen...    40   0.071
tr|B8A7R7|B8A7R7_ORYSI Putative uncharacterized protein OS=Oryza...    40   0.071
tr|A3A0L4|A3A0L4_ORYSJ Putative uncharacterized protein OS=Oryza...    40   0.071
tr|A7PUT6|A7PUT6_VITVI Chromosome chr4 scaffold_32, whole genome...    39   0.21 
tr|Q7X741|Q7X741_ORYSJ Os04g0489800 protein OS=Oryza sativa subs...    37   0.79 
tr|B8AVU7|B8AVU7_ORYSI Putative uncharacterized protein OS=Oryza...    37   0.79 
tr|A3AV39|A3AV39_ORYSJ Putative uncharacterized protein OS=Oryza...    37   0.79 
tr|Q948S5|Q948S5_TOBAC Myb OS=Nicotiana tabacum GN=NtmybA2 PE=2 ...    36   1.8  
tr|Q93XR9|Q93XR9_9ROSI Bg55 protein OS=Bruguiera gymnorhiza GN=b...    35   3.0  
tr|A5CBF5|A5CBF5_VITVI Putative uncharacterized protein OS=Vitis...    35   3.9  
tr|A9SNT2|A9SNT2_PHYPA Predicted protein (Fragment) OS=Physcomit...    34   5.1  
tr|A9U4E2|A9U4E2_PHYPA Predicted protein (Fragment) OS=Physcomit...    34   6.7  

>tr|A7QBN6|A7QBN6_VITVI Chromosome chr1 scaffold_75, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00035050001
           PE=4 SV=1
          Length = 779

 Score = 51.2 bits (121), Expect = 4e-05
 Identities = 24/56 (42%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
 Frame = +2

Query: 413 EHEVFILAERKMYEEMCRKLALLVQKILDVFPTLEALQP-EKSGMQALCEVQWAVD 577
           E  +F +++ K++  MCR L+ +  KIL++FP LEA +P  KSG+QALC +  A++
Sbjct: 7   EESLFAVSDAKLHGGMCRMLSTIYCKILEIFPVLEAARPRSKSGIQALCSLHIALE 62


>tr|A5C9K5|A5C9K5_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_036163 PE=4 SV=1
          Length = 783

 Score = 51.2 bits (121), Expect = 4e-05
 Identities = 24/56 (42%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
 Frame = +2

Query: 413 EHEVFILAERKMYEEMCRKLALLVQKILDVFPTLEALQP-EKSGMQALCEVQWAVD 577
           E  +F +++ K++  MCR L+ +  KIL++FP LEA +P  KSG+QALC +  A++
Sbjct: 7   EESLFAVSDAKLHGGMCRXLSTIYCKILEIFPVLEAARPRSKSGIQALCSLHIALE 62


>tr|Q7F1X9|Q7F1X9_ORYSJ B1065G12.5 protein OS=Oryza sativa subsp.
           japonica GN=B1065G12.5 PE=4 SV=1
          Length = 826

 Score = 40.4 bits (93), Expect = 0.071
 Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
 Frame = +2

Query: 389 IDQMEVIEEHEVFILAERKMYEEMCRKLALLVQKILDVFPTLEALQPE-KSGMQALCEVQ 565
           +D ME   E   F+  + K++  M R     V K++ +FP +EA +P  KSG+QALC + 
Sbjct: 1   MDAMEA--EEGPFLANDAKLHAGMYRAFHPAVSKLVAIFPFIEASRPRSKSGIQALCSLH 58

Query: 566 WAVD 577
            A+D
Sbjct: 59  VALD 62


>tr|Q5N8V2|Q5N8V2_ORYSJ cDNA clone:J033030O21, full insert sequence
           OS=Oryza sativa subsp. japonica GN=P0035F12.19 PE=2 SV=1
          Length = 800

 Score = 40.4 bits (93), Expect = 0.071
 Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
 Frame = +2

Query: 389 IDQMEVIEEHEVFILAERKMYEEMCRKLALLVQKILDVFPTLEALQPE-KSGMQALCEVQ 565
           +D ME   E   F+  + K++  M R     V K++ +FP +EA +P  KSG+QALC + 
Sbjct: 1   MDAMEA--EEGPFLANDAKLHAGMYRAFHPAVSKLVAIFPFIEASRPRSKSGIQALCSLH 58

Query: 566 WAVD 577
            A+D
Sbjct: 59  VALD 62


>tr|B8A7R7|B8A7R7_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_04809 PE=4 SV=1
          Length = 798

 Score = 40.4 bits (93), Expect = 0.071
 Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
 Frame = +2

Query: 389 IDQMEVIEEHEVFILAERKMYEEMCRKLALLVQKILDVFPTLEALQPE-KSGMQALCEVQ 565
           +D ME   E   F+  + K++  M R     V K++ +FP +EA +P  KSG+QALC + 
Sbjct: 1   MDAMEA--EEGPFLANDAKLHAGMYRAFHPAVSKLVAIFPFIEASRPRSKSGIQALCSLH 58

Query: 566 WAVD 577
            A+D
Sbjct: 59  VALD 62


>tr|A3A0L4|A3A0L4_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_004336 PE=4 SV=1
          Length = 795

 Score = 40.4 bits (93), Expect = 0.071
 Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
 Frame = +2

Query: 389 IDQMEVIEEHEVFILAERKMYEEMCRKLALLVQKILDVFPTLEALQPE-KSGMQALCEVQ 565
           +D ME   E   F+  + K++  M R     V K++ +FP +EA +P  KSG+QALC + 
Sbjct: 1   MDAMEA--EEGPFLANDAKLHAGMYRAFHPAVSKLVAIFPFIEASRPRSKSGIQALCSLH 58

Query: 566 WAVD 577
            A+D
Sbjct: 59  VALD 62


>tr|A7PUT6|A7PUT6_VITVI Chromosome chr4 scaffold_32, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00024914001
           PE=4 SV=1
          Length = 695

 Score = 38.9 bits (89), Expect = 0.21
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = +2

Query: 458 MCRKLALLVQKILDVFPTLEALQPEKSGMQALCEVQWAVD 577
           MC  L  LV ++L + P +EA +P K+G  ALC +  A++
Sbjct: 1   MCTDLMNLVDRVLKILPEIEAARPCKAGRDALCSINLAIE 40


>tr|Q7X741|Q7X741_ORYSJ Os04g0489800 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0084K20.5 PE=4 SV=2
          Length = 800

 Score = 37.0 bits (84), Expect = 0.79
 Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
 Frame = +2

Query: 398 MEVIEEHEVFI-LAERKMYEEMCRKLALLVQKILDVFPTLEALQP-EKSGMQALCEVQWA 571
           ME +E    FI     K++  +C++L  +V ++LDV P LEA +P   SG+ AL  ++ A
Sbjct: 1   MEKVEVDGNFIGTGNWKLHGALCKQLHKVVLEVLDVIPVLEATRPGNSSGLLALSSLRIA 60

Query: 572 VD 577
           V+
Sbjct: 61  VE 62


>tr|B8AVU7|B8AVU7_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_16414 PE=4 SV=1
          Length = 800

 Score = 37.0 bits (84), Expect = 0.79
 Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
 Frame = +2

Query: 398 MEVIEEHEVFI-LAERKMYEEMCRKLALLVQKILDVFPTLEALQP-EKSGMQALCEVQWA 571
           ME +E    FI     K++  +C++L  +V ++LDV P LEA +P   SG+ AL  ++ A
Sbjct: 1   MEKVEVDGNFIGTGNWKLHGALCKQLHKVVLEVLDVIPVLEATRPGNSSGLLALSSLRIA 60

Query: 572 VD 577
           V+
Sbjct: 61  VE 62


>tr|A3AV39|A3AV39_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_014661 PE=4 SV=1
          Length = 761

 Score = 37.0 bits (84), Expect = 0.79
 Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
 Frame = +2

Query: 398 MEVIEEHEVFI-LAERKMYEEMCRKLALLVQKILDVFPTLEALQP-EKSGMQALCEVQWA 571
           ME +E    FI     K++  +C++L  +V ++LDV P LEA +P   SG+ AL  ++ A
Sbjct: 1   MEKVEVDGNFIGTGNWKLHGALCKQLHKVVLEVLDVIPVLEATRPGNSSGLLALSSLRIA 60

Query: 572 VD 577
           V+
Sbjct: 61  VE 62