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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912225
Clone id YMU001_000016_F01
Library
Length 434
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000016_F01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ATTTGGATGAGGGTGAAAGACATACAAAGTAGTCTACAACAGATGAGTTTAGTATGCATG
TCATATGTGGAAATCTTAGTTTACTGCAGTAGCCTAAGATGTACAGGATGGAGAAACCTT
TTGAAGCGGTGGACCTGGACCTTATGTGCTTATTGGGCGAAGATTTGGAAGAGTTCTCGC
ATACAGATGCTAAGGATACCAATCAATCTAGATTCATGCATGAGCAAGTTTGTTCAGATG
TAGTTGATGATAACCTTATACAGTTGTTGGATGATGCTTTACTTGATTTTGAGCCTCTAT
AAGATATAGAAAATTCTTTTCTGATGCATCTTGCGAGCCCAATGAAGAGGATTTTACTAG
ATACTTGATGTATTCAAATATGCACGATTGGGATTCCAATACTAGTGAGAGCGAAGGTGC
ACTACCAATGCTTT
■■Homology search results ■■ -
sp_hit_id Q5GAA9
Definition sp|Q5GAA9|MATK_ARTFM Maturase K OS=Artanema fimbriatum
Align length 52
Score (bit) 30.0
E-value 4.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912225|Adiantum capillus-veneris mRNA, clone:
YMU001_000016_F01.
         (434 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5GAA9|MATK_ARTFM Maturase K OS=Artanema fimbriatum GN=matK P...    30   4.3  
sp|Q8SM20|MATK_ANTMA Maturase K OS=Antirrhinum majus GN=matK PE=...    30   4.3  
sp|Q5GA98|MATK_MIMGU Maturase K OS=Mimulus guttatus GN=matK PE=3...    30   5.6  
sp|B2RRF6|ZF518_MOUSE Zinc finger protein 518 OS=Mus musculus GN...    29   7.3  
sp|O86722|PHS_STRCO Putative pterin-4-alpha-carbinolamine dehydr...    29   7.3  
sp|P16369|CUPP_DROPS Pupal cuticle protein OS=Drosophila pseudoo...    29   7.3  
sp|P43672|UUP_ECOLI ABC transporter ATP-binding protein uup OS=E...    29   9.6  

>sp|Q5GAA9|MATK_ARTFM Maturase K OS=Artanema fimbriatum GN=matK PE=3
           SV=1
          Length = 506

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +1

Query: 1   IWMRVKDIQSSLQQMSLVCMSYVEILVYCSSLRCTGWRNLLKRWTWTLCAYW 156
           I+++VKD+Q++L  +   CM YV      S L   G   L+ +W   L  +W
Sbjct: 256 IFIKVKDLQANLWLVKEPCMHYVR-YQRKSILASKGTSVLMNKWKCYLVTFW 306


>sp|Q8SM20|MATK_ANTMA Maturase K OS=Antirrhinum majus GN=matK PE=3
           SV=1
          Length = 508

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +1

Query: 1   IWMRVKDIQSSLQQMSLVCMSYVEILVYCSSLRCTGWRNLLKRWTWTLCAYW 156
           ++++VKD Q++L  +   CM YV      S L   G   L+K+W   L  +W
Sbjct: 258 VFVKVKDFQANLWLVKEPCMHYVR-YQRKSILASKGTFLLIKKWKCYLMTFW 308


>sp|Q5GA98|MATK_MIMGU Maturase K OS=Mimulus guttatus GN=matK PE=3
           SV=1
          Length = 512

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +1

Query: 1   IWMRVKDIQSSLQQMSLVCMSYVEILVYCSSLRCTGWRNLLKRWTWTLCAYW 156
           I+++VKD Q++L+ +   CM Y+      S L   G    + +W   L A+W
Sbjct: 259 IFVKVKDFQANLRLVKEPCMHYIR-YQRKSILASKGTSLFMNKWKSYLVAFW 309


>sp|B2RRF6|ZF518_MOUSE Zinc finger protein 518 OS=Mus musculus
           GN=Znf518 PE=1 SV=1
          Length = 1478

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 196 SLASVCENSSKSSPNKHIRSRSTA 125
           S A++CEN  K SPNK +  +ST+
Sbjct: 653 SRATLCENLQKESPNKTVTQQSTS 676


>sp|O86722|PHS_STRCO Putative pterin-4-alpha-carbinolamine
           dehydratase OS=Streptomyces coelicolor GN=SCO6540 PE=3
           SV=1
          Length = 101

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -3

Query: 360 LVKSSSLGSQDASEKNFLYLIEAQNQVKHHPTTV*GYHQLHLNKLAHA 217
           L +S  LGS  A+    +++ + Q ++ HH     GYH + L    H+
Sbjct: 28  LTRSYRLGSHFAAAAMVVHVAQVQEELDHHSDLTLGYHTVALAVHTHS 75


>sp|P16369|CUPP_DROPS Pupal cuticle protein OS=Drosophila
           pseudoobscura pseudoobscura GN=Pcp PE=2 SV=2
          Length = 192

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = -3

Query: 306 YLIEAQNQVKHHPTTV*GYHQLHLNKLAHA*I*IDWYP*HLYARTLPNLRPIST 145
           Y++ A   ++ HP  V  Y+   L  +AH     + Y  ++  +T P  RP ST
Sbjct: 108 YILRALEYIRAHPYQVKDYYTGELKTVAHDAAAFNVYTRNIQDQTTPRSRPSST 161


>sp|P43672|UUP_ECOLI ABC transporter ATP-binding protein uup
           OS=Escherichia coli (strain K12) GN=uup PE=1 SV=2
          Length = 635

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -3

Query: 375 EYIKYLVKSSSLGSQDASEKNFLYLIEAQNQVKHH 271
           EY+K     S L   D SEKN   L + Q Q+ HH
Sbjct: 96  EYLKRYHDISRLVMNDPSEKNLNELAKVQEQLDHH 130
tr_hit_id B8E2I3
Definition tr|B8E2I3|B8E2I3_9BACT FeS assembly ATPase SufC OS=Dictyoglomus turgidum DSM 6724
Align length 65
Score (bit) 34.3
E-value 3.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912225|Adiantum capillus-veneris mRNA, clone:
YMU001_000016_F01.
         (434 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8E2I3|B8E2I3_9BACT FeS assembly ATPase SufC OS=Dictyoglomus ...    34   3.2  
tr|Q8MF85|Q8MF85_9GENT Maturase K (Fragment) OS=Androya decaryi ...    34   3.2  
tr|B2YZ28|B2YZ28_9HIV1 Envelope glycoprotein OS=Human immunodefi...    34   4.2  
tr|Q8M9C4|Q8M9C4_MYOMN Maturase K (Fragment) OS=Myoporum montanu...    33   5.4  
tr|Q7YKM6|Q7YKM6_MYOMN Maturase K OS=Myoporum montanum GN=matK P...    33   5.4  
tr|B3UCM8|B3UCM8_9HIV1 Envelope glycoprotein OS=Human immunodefi...    33   7.1  
tr|B3UCJ8|B3UCJ8_9HIV1 Envelope glycoprotein OS=Human immunodefi...    33   7.1  
tr|B3UCJ2|B3UCJ2_9HIV1 Envelope glycoprotein OS=Human immunodefi...    33   7.1  
tr|B3U908|B3U908_9HIV1 Envelope glycoprotein (Fragment) OS=Human...    33   7.1  
tr|Q6VFU7|Q6VFU7_9BETA Chemokine receptor-like protein OS=Simian...    33   7.1  
tr|Q9HVQ1|Q9HVQ1_PSEAE Putative uncharacterized protein OS=Pseud...    33   7.1  
tr|Q02GR8|Q02GR8_PSEAB Putative uncharacterized protein OS=Pseud...    33   7.1  
tr|B3PML0|B3PML0_MYCA5 Triosephosphate isomerase OS=Mycoplasma a...    33   7.1  
tr|B7V064|B7V064_PSEAE Putative uncharacterized protein OS=Pseud...    33   7.1  
tr|A3LKX5|A3LKX5_PSEAE Putative uncharacterized protein OS=Pseud...    33   7.1  
tr|A3L480|A3L480_PSEAE Putative uncharacterized protein OS=Pseud...    33   7.1  
tr|B2YUV9|B2YUV9_9HIV1 Envelope glycoprotein OS=Human immunodefi...    33   9.3  
tr|B2YUQ7|B2YUQ7_9HIV1 Envelope glycoprotein OS=Human immunodefi...    33   9.3  
tr|B5YFF5|B5YFF5_DICT6 FeS assembly ATPase SufC OS=Dictyoglomus ...    33   9.3  

>tr|B8E2I3|B8E2I3_9BACT FeS assembly ATPase SufC OS=Dictyoglomus
           turgidum DSM 6724 GN=Dtur_1553 PE=4 SV=1
          Length = 250

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
 Frame = +3

Query: 81  LLQ*PKMYRMEKPFEAVDLDLMCLLGEDLEEFSHTDAKDTNQSRFMHEQVCSDVVD-DNL 257
           LL  PK+  +++P   VD+D + L+GE+L + S    K++N     H     D V+ D++
Sbjct: 157 LLAKPKLAMLDEPDSGVDIDSLKLIGENLRKIS----KESNLLIVTHNLKILDYVNTDSV 212

Query: 258 IQLLD 272
           + LLD
Sbjct: 213 VVLLD 217


>tr|Q8MF85|Q8MF85_9GENT Maturase K (Fragment) OS=Androya decaryi
           GN=matK PE=3 SV=1
          Length = 479

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 20/59 (33%), Positives = 29/59 (49%)
 Frame = +1

Query: 1   IWMRVKDIQSSLQQMSLVCMSYVEILVYCSSLRCTGWRNLLKRWTWTLCAYWAKIWKSS 177
           I+++VKD Q +L  +   CM YV      S L   G   L+ +W W L  +W   W+ S
Sbjct: 229 IFVKVKDFQENLWLVKEPCMHYVR-YQRKSILASKGTSLLMNKWKWYLVTFWQ--WRFS 284


>tr|B2YZ28|B2YZ28_9HIV1 Envelope glycoprotein OS=Human
           immunodeficiency virus 1 GN=env PE=4 SV=1
          Length = 869

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 18/41 (43%), Positives = 24/41 (58%)
 Frame = +1

Query: 70  EILVYCSSLRCTGWRNLLKRWTWTLCAYWAKIWKSSRIQML 192
           E+L Y  +L   GW  LLK W W L  YW++  KSS + +L
Sbjct: 790 ELLKYWWNLGRRGWE-LLKYW-WNLLQYWSQALKSSAVSLL 828


>tr|Q8M9C4|Q8M9C4_MYOMN Maturase K (Fragment) OS=Myoporum montanum
           GN=matK PE=3 SV=1
          Length = 484

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +1

Query: 1   IWMRVKDIQSSLQQMSLVCMSYVEILVYCSSLRCTGWRNLLKRWTWTLCAYWAKIWKSS 177
           ++++VKD Q +L      CM YV      S L   G   L+ +W W L  +W   W+ S
Sbjct: 231 VFVKVKDFQENLWLFKEPCMHYVR-YQRKSILASKGTSLLMNKWKWYLVTFWQ--WRFS 286


>tr|Q7YKM6|Q7YKM6_MYOMN Maturase K OS=Myoporum montanum GN=matK PE=3
           SV=1
          Length = 511

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +1

Query: 1   IWMRVKDIQSSLQQMSLVCMSYVEILVYCSSLRCTGWRNLLKRWTWTLCAYWAKIWKSS 177
           ++++VKD Q +L      CM YV      S L   G   L+ +W W L  +W   W+ S
Sbjct: 258 VFVKVKDFQENLWLFKEPCMHYVR-YQRKSILASKGTSLLMNKWKWYLVTFWQ--WRFS 313


>tr|B3UCM8|B3UCM8_9HIV1 Envelope glycoprotein OS=Human
           immunodeficiency virus 1 GN=env PE=4 SV=1
          Length = 866

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
 Frame = +1

Query: 1   IWMRVKDI----QSSLQQMSLVCMSYVEILVYCSSLRCTGWRNLLKRWTWTLCAYWAKIW 168
           IW+ ++ +       L+ + L+    VE+L       C GW  +LK W W L  YW++  
Sbjct: 766 IWVDLRSLCLFSYHRLRDLLLIVTRIVELL------GCRGWE-VLKYW-WNLLQYWSQEL 817

Query: 169 KSSRIQMLRI 198
           K+S + +L +
Sbjct: 818 KNSAVSLLNV 827


>tr|B3UCJ8|B3UCJ8_9HIV1 Envelope glycoprotein OS=Human
           immunodeficiency virus 1 GN=env PE=4 SV=1
          Length = 866

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
 Frame = +1

Query: 1   IWMRVKDI----QSSLQQMSLVCMSYVEILVYCSSLRCTGWRNLLKRWTWTLCAYWAKIW 168
           IW+ ++ +       L+ + L+    VE+L       C GW  +LK W W L  YW++  
Sbjct: 766 IWVDLRSLCLFSYHHLRDLLLIVTRIVELL------GCRGWE-VLKYW-WNLLQYWSQEL 817

Query: 169 KSSRIQMLRI 198
           K+S + +L +
Sbjct: 818 KNSAVSLLNV 827


>tr|B3UCJ2|B3UCJ2_9HIV1 Envelope glycoprotein OS=Human
           immunodeficiency virus 1 GN=env PE=4 SV=1
          Length = 866

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
 Frame = +1

Query: 1   IWMRVKDI----QSSLQQMSLVCMSYVEILVYCSSLRCTGWRNLLKRWTWTLCAYWAKIW 168
           IW+ ++ +       L+ + L+    VE+L       C GW  +LK W W L  YW++  
Sbjct: 766 IWVDLRSLCLFSYHRLRDLLLIVTRIVELL------GCRGWE-VLKYW-WNLLQYWSQEL 817

Query: 169 KSSRIQMLRI 198
           K+S + +L +
Sbjct: 818 KNSAVSLLNV 827


>tr|B3U908|B3U908_9HIV1 Envelope glycoprotein (Fragment) OS=Human
           immunodeficiency virus 1 GN=env PE=4 SV=1
          Length = 861

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
 Frame = +1

Query: 1   IWMRVKD----IQSSLQQMSLVCMSYVEILVYCSSLRCTGWRNLLKRWTWTLCAYWAKIW 168
           IW+ ++     I  SL+ + L+    V +L       C GW  LLK W W L  YW++  
Sbjct: 761 IWVDLRSLCLFIYHSLRDLLLIVARIVGLL------GCRGWE-LLKYW-WNLLQYWSQEL 812

Query: 169 KSSRIQML 192
           K+S + +L
Sbjct: 813 KNSAVSLL 820


>tr|Q6VFU7|Q6VFU7_9BETA Chemokine receptor-like protein OS=Simian
           cytomegalovirus PE=4 SV=1
          Length = 339

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = -2

Query: 115 FSILYILGYCSKLRFPHMTCILNSSVVDYF-VCLSPS 8
           F +++IL Y  KLRFP     LN+++ D F VC+ P+
Sbjct: 42  FMLVFILVYRRKLRFPSDIYFLNAAIADIFCVCMLPA 78