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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912228
Clone id YMU001_000016_F04
Library
Length 495
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000016_F04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GTTGGAAGTCAACTCACAGAGTGTCGGTATAGAGTCTGGGAAAACTTTTCTTCAAGATGG
ATTGCGGAATTTAAGACAAAAAGTGAAGCTAGAACTCCCTGGGAAGAAGCAGGCCAGGAA
TTTTCATGAGTCGCTTTTGTCTGATCATGAGGACGCAAGTCCACCTGTGGAGGAAGATTT
CTCCCAAATTGAGCTGTCAGAGTTCGATAAGAAGCTGTCTAGCATGAGAAAAGGTGGGGA
GGCTGTTGAGAGCTCTGAAAAATCAGAGAAAAACAGTCAAAATGCTGAGATCTCTGATGA
ATGATGCGTCCCCACTAATTTCGAGTCCTCCAGCAGGATTGCTTCAAGTTACAAGGAGAA
GCAAAGCATAAGCTGTCTATGTTACAAGGAGTAGCAAAGCGTAAGTTGTCTGTGTAAAAA
GAAAATATTGTTCTTGAAGTAGTTTGGATCATCAGAGACCTTAAAATGTATATAGCTTGT
TTGGTCAATTCAAAA
■■Homology search results ■■ -
sp_hit_id P67458
Definition sp|P67458|EX7S_SALTY Exodeoxyribonuclease 7 small subunit OS=Salmonella typhimurium
Align length 48
Score (bit) 31.2
E-value 2.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912228|Adiantum capillus-veneris mRNA, clone:
YMU001_000016_F04.
         (495 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P67458|EX7S_SALTY Exodeoxyribonuclease 7 small subunit OS=Sal...    31   2.7  
sp|P67459|EX7S_SALTI Exodeoxyribonuclease 7 small subunit OS=Sal...    31   2.7  
sp|A9MX07|EX7S_SALPB Exodeoxyribonuclease 7 small subunit OS=Sal...    31   2.7  
sp|Q5PFR8|EX7S_SALPA Exodeoxyribonuclease 7 small subunit OS=Sal...    31   2.7  
sp|Q57SE0|EX7S_SALCH Exodeoxyribonuclease 7 small subunit OS=Sal...    31   2.7  
sp|A9MM40|EX7S_SALAR Exodeoxyribonuclease 7 small subunit OS=Sal...    31   2.7  
sp|A8AK32|EX7S_CITK8 Exodeoxyribonuclease 7 small subunit OS=Cit...    31   2.7  
sp|B0SZ10|FABZ_CAUSK (3R)-hydroxymyristoyl-[acyl-carrier-protein...    31   3.5  
sp|A4W793|EX7S_ENT38 Exodeoxyribonuclease 7 small subunit OS=Ent...    31   3.5  
sp|A7E436|DBP8_SCLS1 ATP-dependent RNA helicase dbp8 OS=Scleroti...    30   4.6  
sp|Q9Y7M8|YNTB_SCHPO Probable RNA exonuclease C9B6.11c OS=Schizo...    30   6.0  
sp|P36630|CG22_SCHPO G2/mitotic-specific cyclin cig2 OS=Schizosa...    30   6.0  

>sp|P67458|EX7S_SALTY Exodeoxyribonuclease 7 small subunit
           OS=Salmonella typhimurium GN=xseB PE=3 SV=2
          Length = 80

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = +2

Query: 29  IESGKTFLQDGLRNLRQKVKLELPGK---KQARNFHESLLSDHEDASP 163
           +ESG   L+D L    + V+L   G+   +QA    + LLSD+E+ASP
Sbjct: 25  LESGDLPLEDALNEFERGVQLARQGQAKLQQAEQRVQILLSDNEEASP 72


>sp|P67459|EX7S_SALTI Exodeoxyribonuclease 7 small subunit
           OS=Salmonella typhi GN=xseB PE=3 SV=2
          Length = 80

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = +2

Query: 29  IESGKTFLQDGLRNLRQKVKLELPGK---KQARNFHESLLSDHEDASP 163
           +ESG   L+D L    + V+L   G+   +QA    + LLSD+E+ASP
Sbjct: 25  LESGDLPLEDALNEFERGVQLARQGQAKLQQAEQRVQILLSDNEEASP 72


>sp|A9MX07|EX7S_SALPB Exodeoxyribonuclease 7 small subunit
           OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
           GN=xseB PE=3 SV=1
          Length = 80

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = +2

Query: 29  IESGKTFLQDGLRNLRQKVKLELPGK---KQARNFHESLLSDHEDASP 163
           +ESG   L+D L    + V+L   G+   +QA    + LLSD+E+ASP
Sbjct: 25  LESGDLPLEDALNEFERGVQLARQGQAKLQQAEQRVQILLSDNEEASP 72


>sp|Q5PFR8|EX7S_SALPA Exodeoxyribonuclease 7 small subunit
           OS=Salmonella paratyphi A GN=xseB PE=3 SV=3
          Length = 80

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = +2

Query: 29  IESGKTFLQDGLRNLRQKVKLELPGK---KQARNFHESLLSDHEDASP 163
           +ESG   L+D L    + V+L   G+   +QA    + LLSD+E+ASP
Sbjct: 25  LESGDLPLEDALNEFERGVQLARQGQAKLQQAEQRVQILLSDNEEASP 72


>sp|Q57SE0|EX7S_SALCH Exodeoxyribonuclease 7 small subunit
           OS=Salmonella choleraesuis GN=xseB PE=3 SV=1
          Length = 80

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = +2

Query: 29  IESGKTFLQDGLRNLRQKVKLELPGK---KQARNFHESLLSDHEDASP 163
           +ESG   L+D L    + V+L   G+   +QA    + LLSD+E+ASP
Sbjct: 25  LESGDLPLEDALNEFERGVQLARQGQAKLQQAEQRVQILLSDNEEASP 72


>sp|A9MM40|EX7S_SALAR Exodeoxyribonuclease 7 small subunit
           OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86
           / RSK2980) GN=xseB PE=3 SV=1
          Length = 80

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = +2

Query: 29  IESGKTFLQDGLRNLRQKVKLELPGK---KQARNFHESLLSDHEDASP 163
           +ESG   L+D L    + V+L   G+   +QA    + LLSD+E+ASP
Sbjct: 25  LESGDLPLEDALNEFERGVQLARQGQAKLQQAEQRVQILLSDNEEASP 72


>sp|A8AK32|EX7S_CITK8 Exodeoxyribonuclease 7 small subunit
           OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83
           / SGSC4696) GN=xseB PE=3 SV=1
          Length = 80

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = +2

Query: 29  IESGKTFLQDGLRNLRQKVKLELPGK---KQARNFHESLLSDHEDASP 163
           +ESG   L++ L    + V+L   G+   +QA    + LLSD+EDASP
Sbjct: 25  LESGDLPLEEALNEFERGVQLARQGQAKLQQAEQRVQILLSDNEDASP 72


>sp|B0SZ10|FABZ_CAUSK (3R)-hydroxymyristoyl-[acyl-carrier-protein]
           dehydratase OS=Caulobacter sp. (strain K31) GN=fabZ PE=3
           SV=1
          Length = 163

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -2

Query: 476 AIYILRSLMIQTTSRTIFSFYTDNLRFATP 387
           A+ + +SL ++T  +TIF    DN RF TP
Sbjct: 85  AVLMSKSLEVETEGKTIFFMSVDNARFRTP 114


>sp|A4W793|EX7S_ENT38 Exodeoxyribonuclease 7 small subunit
           OS=Enterobacter sp. (strain 638) GN=xseB PE=3 SV=1
          Length = 80

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = +2

Query: 29  IESGKTFLQDGLRNLRQKVKLELPGK---KQARNFHESLLSDHEDASP 163
           +ESG   L+D L    + V+L   G+   +QA    + LLSD EDA+P
Sbjct: 25  LESGDLPLEDALNEFERGVQLARQGQVKLQQAEQRVQILLSDSEDAAP 72


>sp|A7E436|DBP8_SCLS1 ATP-dependent RNA helicase dbp8 OS=Sclerotinia
           sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=dbp8
           PE=3 SV=1
          Length = 540

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +2

Query: 77  QKVKLELPGKKQARNFHESLLSDHEDASPPVEEDFSQIELSEFDKKLSSMRK 232
           ++V +E PG    ++ H S   D +D    V++D SQ +    D + S  R+
Sbjct: 14  EQVSIEAPGSSSPQSNHNSSSDDEQD----VQDDISQSDSDSLDSQASRKRR 61
tr_hit_id Q23RM7
Definition tr|Q23RM7|Q23RM7_TETTH Putative uncharacterized protein (Fragment) OS=Tetrahymena thermophila SB210
Align length 97
Score (bit) 33.1
E-value 7.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912228|Adiantum capillus-veneris mRNA, clone:
YMU001_000016_F04.
         (495 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q23RM7|Q23RM7_TETTH Putative uncharacterized protein (Fragmen...    33   7.3  
tr|B2KND9|B2KND9_POPEU DRE-binding protein OS=Populus euphratica...    33   9.5  
tr|A9XBG4|A9XBG4_POPTR Putative DRE-binding protein 3 OS=Populus...    33   9.5  

>tr|Q23RM7|Q23RM7_TETTH Putative uncharacterized protein (Fragment)
            OS=Tetrahymena thermophila SB210 GN=TTHERM_00384650 PE=4
            SV=2
          Length = 2585

 Score = 33.1 bits (74), Expect = 7.3
 Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
 Frame = -2

Query: 437  SRTIFSFYTDNLRFATPCNIDSLCFA---SPCNLKQSCWRTRN*WGRIIHQRSQHFDCFS 267
            S  I S+ + NL +   CNI S C     S  ++ QSC+ T +    I +Q S  +   +
Sbjct: 1046 SYAIKSYTSSNLVYTNQCNISSFCKTCQNSNQSICQSCYSTNS----ITYQSSTVYVQET 1101

Query: 266  LIFQSSQQPPHLFSC*TASYRTLTAQFGRNLPPQVDL 156
            ++ Q++     + SC   SY+  T+Q G+ +  Q DL
Sbjct: 1102 ILNQATSFQSCVASCPQQSYQ--TSQAGQAVCLQCDL 1136


>tr|B2KND9|B2KND9_POPEU DRE-binding protein OS=Populus euphratica
           PE=2 SV=1
          Length = 469

 Score = 32.7 bits (73), Expect = 9.5
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +2

Query: 26  GIESGKTFLQDGLRNLRQKVKLELPGKKQARNFHESLLSDHE 151
           GI+    FLQ+   N+  K+K E+   + +   HE L SDH+
Sbjct: 258 GIDDRYDFLQNETENVEYKLKNEIAESRLSNRLHECLSSDHD 299


>tr|A9XBG4|A9XBG4_POPTR Putative DRE-binding protein 3 OS=Populus
           trichocarpa GN=DREB3 PE=4 SV=1
          Length = 469

 Score = 32.7 bits (73), Expect = 9.5
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +2

Query: 26  GIESGKTFLQDGLRNLRQKVKLELPGKKQARNFHESLLSDHE 151
           GI+    FLQ+   N+  K+K E+   + +   HE L SDH+
Sbjct: 258 GIDDRYDFLQNETENVEYKLKNEIAESRLSNRLHECLSSDHD 299