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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912232
Clone id YMU001_000016_F08
Library
Length 543
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000016_F08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GGGCGTATCGCCCTGGAGTCTGCATGCTGTCGTGCTCATCTTGAAGAGGCAGTATGCTTT
TCTTGCAGGCATTATGATCTTTGGTGTACATCAAGGCTGCCACTTTAGTTGAATGATAGT
TGATTGCACGGGGCGGTACGATGCTGATGCATTTTGTAGTAGCAATTGCAATGTGGCCAC
TGTCTGTAATTTGATGGAGATGGGTCAAAAGAAGCTCATTCATGCTCTTGGATGTTGCTG
TTGTCTGTAATTTGATGGAGCTTTATCAGATGGGTCAAAAGAGCTCATTCATGCTCTTGG
ATATTAAATAATAATCATCATTAGCAGGTCACCTTTACACTGCATGACCTGTGTATTCTA
GATAAGAACATGCCCGCCTCTGCTGGCATGCTCAGCAGATGTGTTTGTAAAGAGCCTCTA
TATGAAGTGATGAGGAGCAGTAATCCGGAGTCTTTGAAGCTCCGATAGTTGAAGGTGAGA
GTTGTAATGTACAGCGATAGATGATCTGAGTCATTTTCTTATAGTGGAAGGTGGGATTTG
TAA
■■Homology search results ■■ -
sp_hit_id P65080
Definition sp|P65080|Y3446_MYCBO Uncharacterized protein Mb3446 OS=Mycobacterium bovis
Align length 44
Score (bit) 30.0
E-value 7.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912232|Adiantum capillus-veneris mRNA, clone:
YMU001_000016_F08.
         (543 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P65080|Y3446_MYCBO Uncharacterized protein Mb3446 OS=Mycobact...    30   7.6  
sp|P65079|Y3412_MYCTU Uncharacterized protein Rv3412/MT3521 OS=M...    30   7.6  
sp|Q96NU7|HUTI_HUMAN Probable imidazolonepropionase OS=Homo sapi...    30   7.6  

>sp|P65080|Y3446_MYCBO Uncharacterized protein Mb3446
           OS=Mycobacterium bovis GN=Mb3446 PE=4 SV=1
          Length = 136

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -2

Query: 260 LHQITDNSNIQEHE*ASFDPSPSNYRQWPHCNCYYKMHQHRTAP 129
           L Q+  +  ++ HE A +DP P +Y  W +C  Y     +  AP
Sbjct: 86  LLQLLIDGTVRPHEPA-YDPEPDSYVTWDYCRGYADASLNEAAP 128


>sp|P65079|Y3412_MYCTU Uncharacterized protein Rv3412/MT3521
           OS=Mycobacterium tuberculosis GN=Rv3412 PE=4 SV=1
          Length = 136

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -2

Query: 260 LHQITDNSNIQEHE*ASFDPSPSNYRQWPHCNCYYKMHQHRTAP 129
           L Q+  +  ++ HE A +DP P +Y  W +C  Y     +  AP
Sbjct: 86  LLQLLIDGTVRPHEPA-YDPEPDSYVTWDYCRGYADASLNEAAP 128


>sp|Q96NU7|HUTI_HUMAN Probable imidazolonepropionase OS=Homo sapiens
           GN=AMDHD1 PE=2 SV=1
          Length = 426

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 10/26 (38%), Positives = 20/26 (76%)
 Frame = -3

Query: 208 LTHLHQITDSGHIAIATTKCISIVPP 131
           ++HL +++D G +A+AT +C +I+ P
Sbjct: 281 ISHLEEVSDEGIVAMATARCSAILLP 306
tr_hit_id B8PGP9
Definition tr|B8PGP9|B8PGP9_9APHY Predicted protein OS=Postia placenta Mad-698-R
Align length 34
Score (bit) 34.3
E-value 4.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912232|Adiantum capillus-veneris mRNA, clone:
YMU001_000016_F08.
         (543 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8PGP9|B8PGP9_9APHY Predicted protein OS=Postia placenta Mad-...    34   4.4  
tr|Q232E2|Q232E2_TETTH Putative uncharacterized protein OS=Tetra...    33   9.7  
tr|Q48C61|Q48C61_PSE14 DnaJ domain protein OS=Pseudomonas syring...    33   9.9  

>tr|B8PGP9|B8PGP9_9APHY Predicted protein OS=Postia placenta
           Mad-698-R GN=POSPLDRAFT_99677 PE=4 SV=1
          Length = 734

 Score = 34.3 bits (77), Expect = 4.4
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -3

Query: 541 TNPTFHYKKMTQIIYRCTLQLSPSTIGASKTPDY 440
           +NP FHY K+  I  R  L L PS   +S+ PD+
Sbjct: 2   SNPDFHYSKLQHIAKRAILPLLPSDPASSQKPDH 35


>tr|Q232E2|Q232E2_TETTH Putative uncharacterized protein
            OS=Tetrahymena thermophila SB210 GN=TTHERM_00595540 PE=4
            SV=1
          Length = 2403

 Score = 33.1 bits (74), Expect = 9.7
 Identities = 20/53 (37%), Positives = 24/53 (45%)
 Frame = +2

Query: 185  CNLMEMGQKKLIHALGCCCCL*FDGALSDGSKELIHALGYXXXXXXSRSPLHC 343
            CN+ E G   L  + GC  CL  +GAL  G   LI   GY      S + L C
Sbjct: 1813 CNICEPGTYSLSVSKGCQECL--EGALCQGGSNLITKQGYWRKSLDSENVLKC 1863


>tr|Q48C61|Q48C61_PSE14 DnaJ domain protein OS=Pseudomonas syringae
           pv. phaseolicola (strain 1448A / Race 6) GN=PSPPH_4944
           PE=4 SV=1
          Length = 398

 Score = 33.1 bits (74), Expect = 9.9
 Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
 Frame = +1

Query: 265 IRWVKRAHSCSWILNNNH-H*QVTFTLHDLCILDKNMPASAGMLSRCVCKEPLYEVMRSS 441
           I W+ RA SC  +L   H H +       +CI + + P +A  + R      L  V R +
Sbjct: 20  ILWI-RAFSCGLVLVALHLHWRYGLFGRYICIKNGSQPWTASAMQRTPTHYELLSVARDA 78

Query: 442 NPESLKLR*LKVRVVMYSDR*SESFS 519
           +PE +K    K+   ++ DR S+ ++
Sbjct: 79  SPEQIKKAYRKLAQKLHPDRNSDPYA 104