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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912233
Clone id YMU001_000016_F09
Library
Length 279
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000016_F09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTGAAGACCTCTCTGGCCTACAGCAGACAGGCCATCTCTGCTCTCAGGTAGCATGATCTC
CTTCACAGTACCAGAGGTCAACGGCTTGAGGGTATCTCCAGCAACTCGATCCCCAGAATT
CCATCGGCGCATCCTTTTGGCAAGCTCTTGTAGCTTGGGCTCACTACTCCGTTTCAAATC
ATTAAGATCTCCATCCTCGTCAGATTTCAAATCTACAACATCCTTTGCATCATTTCCTTC
AACATCAGGCACTCCATTCACAATTTCCCTGCACTCGGA
■■Homology search results ■■ -
sp_hit_id Q09799
Definition sp|Q09799|KRI1_SCHPO Protein kri1 OS=Schizosaccharomyces pombe
Align length 74
Score (bit) 33.9
E-value 0.26
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912233|Adiantum capillus-veneris mRNA, clone:
YMU001_000016_F09.
         (279 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q09799|KRI1_SCHPO Protein kri1 OS=Schizosaccharomyces pombe G...    34   0.26 
sp|Q5R539|ARS2_PONAB Arsenite-resistance protein 2 OS=Pongo abel...    31   1.7  
sp|Q9BXP5|ARS2_HUMAN Arsenite-resistance protein 2 OS=Homo sapie...    31   1.7  
sp|Q84ZN6|CESA8_ORYSJ Probable cellulose synthase A catalytic su...    30   2.9  
sp|Q61290|CAC1E_MOUSE Voltage-dependent R-type calcium channel s...    30   3.7  
sp|A4IFB1|ARS2_BOVIN Arsenite-resistance protein 2 OS=Bos taurus...    30   3.7  
sp|Q66D54|BETA_YERPS Choline dehydrogenase OS=Yersinia pseudotub...    30   3.7  
sp|A4TNP2|BETA_YERPP Choline dehydrogenase OS=Yersinia pestis (s...    30   3.7  
sp|Q1CFR7|BETA_YERPN Choline dehydrogenase OS=Yersinia pestis bv...    30   3.7  
sp|Q8ZGW0|BETA_YERPE Choline dehydrogenase OS=Yersinia pestis GN...    30   3.7  
sp|Q1C932|BETA_YERPA Choline dehydrogenase OS=Yersinia pestis bv...    30   3.7  
sp|A7FKL6|BETA_YERP3 Choline dehydrogenase OS=Yersinia pseudotub...    30   3.7  
sp|Q03954|SPC19_YEAST DASH complex subunit SPC19 OS=Saccharomyce...    29   6.4  
sp|Q2VPG3|SDA1_XENLA Protein SDA1 homolog OS=Xenopus laevis GN=s...    29   6.4  
sp|Q9NVU7|SDA1_HUMAN Protein SDA1 homolog OS=Homo sapiens GN=SDA...    29   6.4  
sp|Q9ZV25|PLL4_ARATH Probable protein phosphatase 2C PLL4 OS=Ara...    29   6.4  
sp|Q5UQT0|YR337_MIMIV Uncharacterized cullin-like protein R337 O...    29   8.3  

>sp|Q09799|KRI1_SCHPO Protein kri1 OS=Schizosaccharomyces pombe
           GN=kri1 PE=1 SV=1
          Length = 598

 Score = 33.9 bits (76), Expect = 0.26
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
 Frame = -1

Query: 270 REIVNGVPDVEGNDAKDVVDLKSDEDGDLNDLKRSSEPKLQELAKRMRRW---NSGDRVA 100
           +E +    DV GN  KD V  +SDEDGD    K  ++ +L+E      R+   ++  + A
Sbjct: 205 KETIAAFHDVNGN--KDAVSNESDEDGDFLVKKEKTKKQLEEEEHGYERFLLESAQSKEA 262

Query: 99  GDTLKPLTSGTVKE 58
              L+ L+S  VK+
Sbjct: 263 RKVLEDLSSSYVKQ 276


>sp|Q5R539|ARS2_PONAB Arsenite-resistance protein 2 OS=Pongo abelii
           GN=ARS2 PE=2 SV=1
          Length = 871

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -1

Query: 240 EGNDAKDVVDLKSDEDGDLNDLKRSSEPKLQELAKRMRRWNSGD 109
           E + + D    KS+ DGD  + K  SE + ++ +K+  R +SGD
Sbjct: 316 ENDSSNDDKTKKSEGDGDKEEKKEDSEKEAKKSSKKRNRKHSGD 359


>sp|Q9BXP5|ARS2_HUMAN Arsenite-resistance protein 2 OS=Homo sapiens
           GN=ARS2 PE=1 SV=1
          Length = 876

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -1

Query: 240 EGNDAKDVVDLKSDEDGDLNDLKRSSEPKLQELAKRMRRWNSGD 109
           E + + D    KS+ DGD  + K  SE + ++ +K+  R +SGD
Sbjct: 316 ENDSSNDDKTKKSEGDGDKEEKKEDSEKEAKKSSKKRNRKHSGD 359


>sp|Q84ZN6|CESA8_ORYSJ Probable cellulose synthase A catalytic
           subunit 8 [UDP-forming] OS=Oryza sativa subsp. japonica
           GN=CESA8 PE=2 SV=1
          Length = 1081

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = -1

Query: 255 GVPDVEGNDAKDVVDLKSDEDGDLNDLKRSSEPKLQELAKRMRRWNSGDRVAGDTLKP 82
           G P + G + +D     +D+  D N     S  + Q++A RMR W       GD  +P
Sbjct: 73  GSPAIRGEEGEDT---DADDVSDYNYPASGSADQKQKIADRMRSWRMNAGGGGDVGRP 127


>sp|Q61290|CAC1E_MOUSE Voltage-dependent R-type calcium channel
            subunit alpha-1E OS=Mus musculus GN=Cacna1e PE=1 SV=1
          Length = 2272

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 15/69 (21%), Positives = 33/69 (47%)
 Frame = -1

Query: 279  SECREIVNGVPDVEGNDAKDVVDLKSDEDGDLNDLKRSSEPKLQELAKRMRRWNSGDRVA 100
            +E   +   +PDV+      VV++ +  DG+ + LK +   + +E  ++ ++     R  
Sbjct: 1067 TESTSVTVAIPDVDPLVDSTVVNISNKTDGEASPLKEAETKEEEEEVEKKKKQKKEKRET 1126

Query: 99   GDTLKPLTS 73
            G  + P +S
Sbjct: 1127 GKAMVPHSS 1135


>sp|A4IFB1|ARS2_BOVIN Arsenite-resistance protein 2 OS=Bos taurus
           GN=ARS2 PE=2 SV=1
          Length = 876

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -1

Query: 240 EGNDAKDVVDLKSDEDGDLNDLKRSSEPKLQELAKRMRRWNSGD 109
           E   + D    KS+ DGD  + K  SE + ++ +K+  R +SGD
Sbjct: 316 ENESSSDDKIKKSEGDGDKEEKKEDSEKEAKKSSKKRNRKHSGD 359


>sp|Q66D54|BETA_YERPS Choline dehydrogenase OS=Yersinia
           pseudotuberculosis GN=betA PE=3 SV=1
          Length = 567

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +3

Query: 3   EDLSGLQQTGHLCSQVA*SPSQYQRSTA*GYLQQLDPQNSI 125
           +DL+G QQ G        +P   + STA GYL Q  P+N++
Sbjct: 174 DDLNGYQQEGFGPMDRTVTPKGRRASTARGYLDQARPRNNL 214


>sp|A4TNP2|BETA_YERPP Choline dehydrogenase OS=Yersinia pestis
           (strain Pestoides F) GN=betA PE=3 SV=1
          Length = 567

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +3

Query: 3   EDLSGLQQTGHLCSQVA*SPSQYQRSTA*GYLQQLDPQNSI 125
           +DL+G QQ G        +P   + STA GYL Q  P+N++
Sbjct: 174 DDLNGYQQEGFGPMDRTVTPKGRRASTARGYLDQARPRNNL 214


>sp|Q1CFR7|BETA_YERPN Choline dehydrogenase OS=Yersinia pestis bv.
           Antiqua (strain Nepal516) GN=betA PE=3 SV=1
          Length = 567

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +3

Query: 3   EDLSGLQQTGHLCSQVA*SPSQYQRSTA*GYLQQLDPQNSI 125
           +DL+G QQ G        +P   + STA GYL Q  P+N++
Sbjct: 174 DDLNGYQQEGFGPMDRTVTPKGRRASTARGYLDQARPRNNL 214


>sp|Q8ZGW0|BETA_YERPE Choline dehydrogenase OS=Yersinia pestis
           GN=betA PE=3 SV=1
          Length = 567

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +3

Query: 3   EDLSGLQQTGHLCSQVA*SPSQYQRSTA*GYLQQLDPQNSI 125
           +DL+G QQ G        +P   + STA GYL Q  P+N++
Sbjct: 174 DDLNGYQQEGFGPMDRTVTPKGRRASTARGYLDQARPRNNL 214
tr_hit_id B8LLW2
Definition tr|B8LLW2|B8LLW2_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 85
Score (bit) 36.6
E-value 0.65
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912233|Adiantum capillus-veneris mRNA, clone:
YMU001_000016_F09.
         (279 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8LLW2|B8LLW2_PICSI Putative uncharacterized protein OS=Picea...    37   0.65 
tr|Q9LLI6|Q9LLI6_MAIZE Cellulose synthase-4 OS=Zea mays GN=CesA-...    36   1.1  
tr|Q928M1|Q928M1_LISIN Lin2511 protein OS=Listeria innocua GN=li...    35   2.5  
tr|A0JVA4|A0JVA4_ARTS2 Pseudouridine synthase OS=Arthrobacter sp...    33   9.4  
tr|A6DT73|A6DT73_9BACT Putative secreted sulfatase ydeN OS=Lenti...    33   9.4  
tr|A0CU97|A0CU97_PARTE Chromosome undetermined scaffold_28, whol...    33   9.4  

>tr|B8LLW2|B8LLW2_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 669

 Score = 36.6 bits (83), Expect = 0.65
 Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 18/85 (21%)
 Frame = -1

Query: 276 ECREIVNGVPDVEG---NDAKDVV------DLKSDE-DGDLNDL--------KRSSEPKL 151
           E R + + +P V+    +D+ D +      D K  E +G  ND+        K   E  L
Sbjct: 319 ESRTVEDEIPVVKSLREDDSSDAMAIDICQDRKDKEMEGSGNDVETPRDKRKKEGQEAGL 378

Query: 150 QELAKRMRRWNSGDRVAGDTLKPLT 76
            E  KR RRWNSG+ ++GD  K  T
Sbjct: 379 HEPVKRQRRWNSGNNLSGDVAKVST 403


>tr|Q9LLI6|Q9LLI6_MAIZE Cellulose synthase-4 OS=Zea mays GN=CesA-4
           PE=2 SV=1
          Length = 1077

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = -1

Query: 255 GVPDVEGNDAKDVVDLKSDEDGDLNDLKRSSEPKLQELAKRMRRWNSGDRVAGDTLKP 82
           G P + G +  D     +D D D N L   +E + Q++A RMR W      +GD  +P
Sbjct: 73  GSPAIRGEEGDD-----TDADSDFNYLASGNEDQKQKIADRMRSWRMNVGGSGDVGRP 125


>tr|Q928M1|Q928M1_LISIN Lin2511 protein OS=Listeria innocua
           GN=lin2511 PE=4 SV=1
          Length = 358

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
 Frame = -1

Query: 252 VPDVEGNDAKDVV-DLKSDEDGDLNDLKRSSEPKLQELAKRMRRWNSGDRVAGDTLKPLT 76
           V ++  N+ KD+V D+ +  D D N +   SE       +  ++WNSG++    +LK LT
Sbjct: 215 VLNLSKNEIKDLVNDVFTALDNDGNIITLLSEIDGSSQKEAQKKWNSGEKSVRSSLKNLT 274

Query: 75  SG-----TVKEIMLPESRDGLS 25
           S        K  + P+S+ G S
Sbjct: 275 SNKNQTLDFKLTLTPDSKKGFS 296


>tr|A0JVA4|A0JVA4_ARTS2 Pseudouridine synthase OS=Arthrobacter sp.
           (strain FB24) GN=Arth_1580 PE=3 SV=1
          Length = 308

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 17/34 (50%), Positives = 23/34 (67%)
 Frame = -1

Query: 120 NSGDRVAGDTLKPLTSGTVKEIMLPESRDGLSAV 19
           +SG +  G +LK L SGTV E+++PE RD L  V
Sbjct: 41  SSGGKAVGKSLK-LASGTVLEVVVPERRDPLEIV 73


>tr|A6DT73|A6DT73_9BACT Putative secreted sulfatase ydeN
           OS=Lentisphaera araneosa HTCC2155 GN=LNTAR_24511 PE=4
           SV=1
          Length = 522

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = -1

Query: 204 SDEDGDLNDLKRSSEPKLQELAKRMRRW 121
           SD+ G+ NDL  S   K QELAK+++ W
Sbjct: 433 SDDIGEQNDLASSHPEKAQELAKKLKSW 460


>tr|A0CU97|A0CU97_PARTE Chromosome undetermined scaffold_28, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00010563001 PE=4 SV=1
          Length = 163

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 12/63 (19%)
 Frame = -1

Query: 276 ECREIVNGVPDVEGNDAKDVVDLKS----DEDGDLN--------DLKRSSEPKLQELAKR 133
           E +EI   + ++E +  + V+++ S    DE G LN        DLKR+ +PKL +L K+
Sbjct: 43  EEQEITRNIKNIEMHYKQKVIEMVSQLLTDEQGTLNIIPKKANIDLKRAIQPKLDKLKKK 102

Query: 132 MRR 124
             R
Sbjct: 103 TER 105