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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912234
Clone id YMU001_000016_F10
Library
Length 480
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000016_F10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GTAGTGTATGTTGAATCTCTAGTATCTAACAAAGATCTTATAACTATTTTATTAAATAGC
TTACTTGCTAAATTTTGTCAAATTGTGGAATCATTGGATGTGCAAAACTCCTTGCTCCCA
AAGGATGCATCATGTGTATATGGACATGCATAGAAGACAATTAGGTATGCAGGTTTAGGT
AGGCCACCATGTTCTACTCATCTACAACGACTATAGAAAACCTATGAAATATTGGGTGGT
CACTTTATGTGCATGAGGTCCATCATTTTCAATCTGCAAAAGACAAGCTTGACATAGGCT
CAGATGACAGAACCATCAAGATTTTGGATGCTGGTTGGGGATACATGAAGCTAAGTCTAG
CTATCCATGTTCAATTCACAGCCTTGCCATCAGCTCAACACGTTTCTTTTCTAACTTTTT
CCCTCATGTCAATTGACACGTTCACTTTTGCTATCATATCTACAATCACCTCTACTTATG
■■Homology search results ■■ -
sp_hit_id Q42384
Definition sp|Q42384|PRL1_ARATH PP1/PP2A phosphatases pleiotropic regulator PRL1 OS=Arabidopsis thaliana
Align length 49
Score (bit) 32.0
E-value 1.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912234|Adiantum capillus-veneris mRNA, clone:
YMU001_000016_F10.
         (480 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q42384|PRL1_ARATH PP1/PP2A phosphatases pleiotropic regulator...    32   1.5  
sp|Q39190|PRL2_ARATH PP1/PP2A phosphatases pleiotropic regulator...    31   2.5  
sp|A8EXD2|SYR_RICCK Arginyl-tRNA synthetase OS=Rickettsia canade...    31   3.3  
sp|Q9WUC8|PLRG1_RAT Pleiotropic regulator 1 OS=Rattus norvegicus...    30   4.3  
sp|Q922V4|PLRG1_MOUSE Pleiotropic regulator 1 OS=Mus musculus GN...    30   4.3  
sp|O43660|PLRG1_HUMAN Pleiotropic regulator 1 OS=Homo sapiens GN...    30   4.3  
sp|Q2KID6|PLRG1_BOVIN Pleiotropic regulator 1 OS=Bos taurus GN=P...    30   4.3  
sp|P16649|TUP1_YEAST General transcriptional corepressor TUP1 OS...    30   7.4  
sp|Q00808|HETE1_PODAN Vegetative incompatibility protein HET-E-1...    30   7.4  
sp|Q6ZMY6|WDR88_HUMAN WD repeat-containing protein 88 OS=Homo sa...    29   9.6  

>sp|Q42384|PRL1_ARATH PP1/PP2A phosphatases pleiotropic regulator
           PRL1 OS=Arabidopsis thaliana GN=PRL1 PE=1 SV=1
          Length = 486

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +3

Query: 228 NIGWSLYVHEVHHFQSAKDKLDIGSDDRTIKILDAGWGYMKLSLAIHVQ 374
           ++GW   V     F  + +    GS DRTIKI D   G +KL+L  H++
Sbjct: 175 HLGWVRSVA----FDPSNEWFCTGSADRTIKIWDVATGVLKLTLTGHIE 219


>sp|Q39190|PRL2_ARATH PP1/PP2A phosphatases pleiotropic regulator
           PRL2 OS=Arabidopsis thaliana GN=PRL2 PE=2 SV=2
          Length = 479

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = +3

Query: 228 NIGWSLYVHEVHHFQSAKDKLDIGSDDRTIKILDAGWGYMKLSLAIHV 371
           ++GW   V     F  + +    GS DRTIKI D   G +KL+L  H+
Sbjct: 169 HLGWVRSVA----FDPSNEWFCTGSADRTIKIWDVATGVLKLTLTGHI 212


>sp|A8EXD2|SYR_RICCK Arginyl-tRNA synthetase OS=Rickettsia
           canadensis (strain McKiel) GN=argS PE=3 SV=1
          Length = 576

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
 Frame = +3

Query: 72  ILSNCGIIGCAKLLAPKGCIMCIWTCIEDN*VCRFR*ATMFYSSTTTIENL*NIGWSLYV 251
           +L+N G+I    L APKG I   W    DN V +   +T +  S        +  WS + 
Sbjct: 272 LLTNMGLIYEGTLPAPKGKIHAKW----DNRVQKLFKSTKYGDSQDRPIEKADGSWSYFA 327

Query: 252 HEVHHFQSAKDKLDIGSDDRTIKILDAGW-GYMKLSLAI 365
            ++ +   AKDK+D G+ +  I +L A   GY+K   AI
Sbjct: 328 SDLAY---AKDKIDRGA-NHLIYVLGADHSGYVKRIEAI 362


>sp|Q9WUC8|PLRG1_RAT Pleiotropic regulator 1 OS=Rattus norvegicus
           GN=Plrg1 PE=2 SV=1
          Length = 514

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 15/25 (60%), Positives = 17/25 (68%)
 Frame = +3

Query: 297 GSDDRTIKILDAGWGYMKLSLAIHV 371
           GS DRTIKI D   G +KLSL  H+
Sbjct: 222 GSADRTIKIWDLASGKLKLSLTGHI 246


>sp|Q922V4|PLRG1_MOUSE Pleiotropic regulator 1 OS=Mus musculus
           GN=Plrg1 PE=2 SV=1
          Length = 513

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 15/25 (60%), Positives = 17/25 (68%)
 Frame = +3

Query: 297 GSDDRTIKILDAGWGYMKLSLAIHV 371
           GS DRTIKI D   G +KLSL  H+
Sbjct: 221 GSADRTIKIWDLASGKLKLSLTGHI 245


>sp|O43660|PLRG1_HUMAN Pleiotropic regulator 1 OS=Homo sapiens
           GN=PLRG1 PE=1 SV=1
          Length = 514

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 15/25 (60%), Positives = 17/25 (68%)
 Frame = +3

Query: 297 GSDDRTIKILDAGWGYMKLSLAIHV 371
           GS DRTIKI D   G +KLSL  H+
Sbjct: 222 GSADRTIKIWDLASGKLKLSLTGHI 246


>sp|Q2KID6|PLRG1_BOVIN Pleiotropic regulator 1 OS=Bos taurus
           GN=PLRG1 PE=2 SV=1
          Length = 513

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 15/25 (60%), Positives = 17/25 (68%)
 Frame = +3

Query: 297 GSDDRTIKILDAGWGYMKLSLAIHV 371
           GS DRTIKI D   G +KLSL  H+
Sbjct: 221 GSADRTIKIWDLASGKLKLSLTGHI 245


>sp|P16649|TUP1_YEAST General transcriptional corepressor TUP1
           OS=Saccharomyces cerevisiae GN=TUP1 PE=1 SV=2
          Length = 713

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = +3

Query: 249 VHEVHHFQSAKDKLDIGSDDRTIKILDAGWGYMKLSLAI 365
           ++ + +F S  DKL  GS DRT++I D   G   L+L+I
Sbjct: 488 IYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQCSLTLSI 525


>sp|Q00808|HETE1_PODAN Vegetative incompatibility protein HET-E-1
            OS=Podospora anserina GN=HET-E1 PE=4 SV=1
          Length = 1356

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
 Frame = +3

Query: 198  SSTTTIENL*NIGWSLYVHEVHHFQSAKDKLDIGSDDRTIKILDAGWGYMKLSLAIH--- 368
            + T T+E      WS+       F   ++++  GSDD+TIKI DA  G    +L  H   
Sbjct: 874  TGTQTLEGHGGSVWSVA------FSPDRERVASGSDDKTIKIWDAASGTCTQTLEGHGGR 927

Query: 369  VQFTAL-PSAQHVS 407
            VQ  A  P  Q V+
Sbjct: 928  VQSVAFSPDGQRVA 941


>sp|Q6ZMY6|WDR88_HUMAN WD repeat-containing protein 88 OS=Homo
           sapiens GN=WDR88 PE=2 SV=1
          Length = 472

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 16/35 (45%), Positives = 17/35 (48%)
 Frame = +3

Query: 264 HFQSAKDKLDIGSDDRTIKILDAGWGYMKLSLAIH 368
           HF      L  G  DRT+ I D   GY KLSL  H
Sbjct: 328 HFARDSSFLISGGFDRTVAIWDVAEGYRKLSLKGH 362
tr_hit_id A9PH78
Definition tr|A9PH78|A9PH78_POPTR Putative uncharacterized protein OS=Populus trichocarpa
Align length 26
Score (bit) 32.7
E-value 0.73
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912234|Adiantum capillus-veneris mRNA, clone:
YMU001_000016_F10.
         (480 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9PH78|A9PH78_POPTR Putative uncharacterized protein OS=Popul...    33   0.73 
tr|B6TCU8|B6TCU8_MAIZE PP1/PP2A phosphatases pleiotropic regulat...    32   1.2  
tr|A9U0I7|A9U0I7_PHYPA Predicted protein OS=Physcomitrella paten...    34   1.6  
tr|A9T5M1|A9T5M1_PHYPA Predicted protein (Fragment) OS=Physcomit...    34   1.6  
tr|B3LWW3|B3LWW3_DROAN GF18152 OS=Drosophila ananassae GN=GF1815...    35   2.4  
tr|B4NH69|B4NH69_DROWI GK13068 OS=Drosophila willistoni GN=GK130...    34   3.2  
tr|Q9VHX5|Q9VHX5_DROME CG2698, isoform A OS=Drosophila melanogas...    34   4.1  
tr|B7Z0V2|B7Z0V2_DROME CG2698, isoform B OS=Drosophila melanogas...    34   4.1  
tr|B4R0C6|B4R0C6_DROSI GD19962 OS=Drosophila simulans GN=GD19962...    34   4.1  
tr|B4I501|B4I501_DROSE GM10992 OS=Drosophila sechellia GN=GM1099...    34   4.1  
tr|B4PQY3|B4PQY3_DROYA GE24959 OS=Drosophila yakuba GN=GE24959 P...    33   7.0  
tr|B4MBK6|B4MBK6_DROVI GJ14284 OS=Drosophila virilis GN=GJ14284 ...    33   7.0  
tr|B3NYU3|B3NYU3_DROER GG14330 OS=Drosophila erecta GN=GG14330 P...    33   7.0  
tr|A4VKY2|A4VKY2_PSEU5 Cyclopropane-fatty-acyl-phospholipid synt...    33   9.2  
tr|A7R7I6|A7R7I6_VITVI Chromosome undetermined scaffold_1811, wh...    33   9.2  
tr|A7SSI1|A7SSI1_NEMVE Predicted protein OS=Nematostella vectens...    33   9.2  

>tr|A9PH78|A9PH78_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 480

 Score = 32.7 bits (73), Expect(2) = 0.73
 Identities = 15/26 (57%), Positives = 19/26 (73%)
 Frame = +3

Query: 297 GSDDRTIKILDAGWGYMKLSLAIHVQ 374
           GS DRTIKI D G G +KL+L  H++
Sbjct: 188 GSADRTIKIWDVGSGRLKLTLTGHIE 213



 Score = 22.7 bits (47), Expect(2) = 0.73
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 217 KTYEILGGHFMCMRSIIFNLQKT 285
           K Y ++ GH   +RS+ F+   T
Sbjct: 161 KNYRVISGHLGWVRSVAFDPSNT 183


>tr|B6TCU8|B6TCU8_MAIZE PP1/PP2A phosphatases pleiotropic regulator
           PRL1 OS=Zea mays PE=2 SV=1
          Length = 478

 Score = 32.3 bits (72), Expect(2) = 1.2
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +3

Query: 267 FQSAKDKLDIGSDDRTIKILDAGWGYMKLSLAIHV-QFTALPSAQHVSFL 413
           F  A +    GS DRTIKI D   G +KL+L  H+ Q   L  +Q  ++L
Sbjct: 176 FDPANEWFCTGSADRTIKIWDLASGTLKLTLTGHIEQIRGLAVSQRHTYL 225



 Score = 22.3 bits (46), Expect(2) = 1.2
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 217 KTYEILGGHFMCMRSIIFN 273
           K Y ++ GH   +RSI F+
Sbjct: 159 KNYRVISGHLGWVRSIAFD 177


>tr|A9U0I7|A9U0I7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_173015 PE=4 SV=1
          Length = 494

 Score = 33.9 bits (76), Expect(2) = 1.6
 Identities = 15/26 (57%), Positives = 20/26 (76%)
 Frame = +3

Query: 297 GSDDRTIKILDAGWGYMKLSLAIHVQ 374
           GS DRTIKI D+G G +KL+L  H++
Sbjct: 202 GSADRTIKIWDSGTGQLKLTLTGHIE 227



 Score = 20.4 bits (41), Expect(2) = 1.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 223 YEILGGHFMCMRSIIFN 273
           Y ++ GH   +RSI F+
Sbjct: 177 YRVISGHLGWVRSIAFD 193


>tr|A9T5M1|A9T5M1_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_140736 PE=4 SV=1
          Length = 341

 Score = 33.9 bits (76), Expect(2) = 1.6
 Identities = 15/26 (57%), Positives = 20/26 (76%)
 Frame = +3

Query: 297 GSDDRTIKILDAGWGYMKLSLAIHVQ 374
           GS DRTIKI D+G G +KL+L  H++
Sbjct: 49  GSADRTIKIWDSGTGQLKLTLTGHIE 74



 Score = 20.4 bits (41), Expect(2) = 1.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 223 YEILGGHFMCMRSIIFN 273
           Y ++ GH   +RSI F+
Sbjct: 24  YRVISGHLGWVRSIAFD 40


>tr|B3LWW3|B3LWW3_DROAN GF18152 OS=Drosophila ananassae GN=GF18152
           PE=4 SV=1
          Length = 819

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
 Frame = +3

Query: 72  ILSNCGIIGCAKLL---APKGCIMCIW 143
           +L+ CG+ GC KLL   APKG +M +W
Sbjct: 128 LLAGCGVAGCVKLLVLYAPKGFLMALW 154


>tr|B4NH69|B4NH69_DROWI GK13068 OS=Drosophila willistoni GN=GK13068
           PE=4 SV=1
          Length = 820

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 3/30 (10%)
 Frame = +3

Query: 72  ILSNCGIIGCAKLL---APKGCIMCIWTCI 152
           +L+ CG+ GC KLL   APKG ++ IW+ +
Sbjct: 126 LLAGCGVAGCIKLLVLYAPKGFLIAIWSWV 155


>tr|Q9VHX5|Q9VHX5_DROME CG2698, isoform A OS=Drosophila melanogaster
           GN=CG2698 PE=1 SV=2
          Length = 817

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
 Frame = +3

Query: 72  ILSNCGIIGCAKLL---APKGCIMCIW 143
           +L+ CG+ GC KLL   APKG ++ IW
Sbjct: 128 LLAGCGVAGCIKLLVLYAPKGFLLAIW 154


>tr|B7Z0V2|B7Z0V2_DROME CG2698, isoform B OS=Drosophila melanogaster
           GN=CG2698 PE=4 SV=1
          Length = 810

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
 Frame = +3

Query: 72  ILSNCGIIGCAKLL---APKGCIMCIW 143
           +L+ CG+ GC KLL   APKG ++ IW
Sbjct: 128 LLAGCGVAGCIKLLVLYAPKGFLLAIW 154


>tr|B4R0C6|B4R0C6_DROSI GD19962 OS=Drosophila simulans GN=GD19962
           PE=4 SV=1
          Length = 818

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
 Frame = +3

Query: 72  ILSNCGIIGCAKLL---APKGCIMCIW 143
           +L+ CG+ GC KLL   APKG ++ IW
Sbjct: 128 LLAGCGVAGCIKLLVLYAPKGFLLAIW 154


>tr|B4I501|B4I501_DROSE GM10992 OS=Drosophila sechellia GN=GM10992
           PE=4 SV=1
          Length = 818

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
 Frame = +3

Query: 72  ILSNCGIIGCAKLL---APKGCIMCIW 143
           +L+ CG+ GC KLL   APKG ++ IW
Sbjct: 128 LLAGCGVAGCIKLLVLYAPKGFLLAIW 154