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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912237
Clone id YMU001_000016_G01
Library
Length 570
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000016_G01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TGTCCCCGCTAAATTACCTGTTCAGTTTTAGCTTTTTTTGCACCGTGATCATTCCATCAT
TGGGTTTTCTTGCGTTTTAAGAAAGCCCTCAGGTTGGATATTTGCTTTGGTTTACTGCTT
ATAGGTCTATCTTTGCCTTGAAAACCTCTTGTGCTTCCTTGACAGTGTAGCTATCCTTGA
GAAAATTGTGCTCTATTGCTTCTAGGTCAAGGAGGCAGATCTGTGAGGGGAGGCTCCTCC
TCTTGCCCTTGCTCCTGGACCATGGCCTCCTTCTACACTTCAGGTGGTGGTAGCCCTTGG
TCTTGGTCCTTTCTTCATATTGGCCTCACTTTTGGCTCTTCTGGTTGTGCTTCCCTTCCT
TCTTCCCGTGCTATAGTAAACTCCATTGGCTGTTCAGGGAGCGTCTCCTTGATGACTTCT
GGGTTCGTAGGGACCTAAGCAACTGCTTAGTGATGATCAAGCCGTTTTTTGGTGTGTCAT
TCTCTTGCTGGCTCATCATCGACCTTAGCTTCCTTTGCTTCTTCTTTCTCAGATGTAGTA
TCCGTTGCTTGCTTGGTTGTCTGGCTGGTT
■■Homology search results ■■ -
sp_hit_id P20398
Definition sp|P20398|PALM3_XENLA Paralemmin-3 OS=Xenopus laevis
Align length 42
Score (bit) 31.6
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912237|Adiantum capillus-veneris mRNA, clone:
YMU001_000016_G01.
         (570 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P20398|PALM3_XENLA Paralemmin-3 OS=Xenopus laevis GN=palm3 PE...    32   2.9  
sp|Q8DQV2|IF2_STRR6 Translation initiation factor IF-2 OS=Strept...    31   3.8  
sp|Q04LW0|IF2_STRP2 Translation initiation factor IF-2 OS=Strept...    31   3.8  
sp|Q9JL35|NSBP1_MOUSE Nucleosome-binding protein 1 OS=Mus muscul...    31   4.9  
sp|Q8VIG2|LKAP_RAT Limkain-b1 OS=Rattus norvegicus GN=Lkap PE=1 ...    31   5.0  
sp|Q8BJ34|LKAP_MOUSE Limkain-b1 OS=Mus musculus GN=Lkap PE=1 SV=2      30   6.5  

>sp|P20398|PALM3_XENLA Paralemmin-3 OS=Xenopus laevis GN=palm3 PE=1
           SV=1
          Length = 591

 Score = 31.6 bits (70), Expect = 2.9
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = -2

Query: 428 TNPEVIKETLPEQPMEFTIAREEGREAQPEEPKVRPI*RKDQ 303
           ++PEV++E+   +PM  TIA+    E     P+ RP+ +K Q
Sbjct: 522 SDPEVVQESSSHEPMSSTIAQSSSAEGN-SSPESRPLLQKSQ 562


>sp|Q8DQV2|IF2_STRR6 Translation initiation factor IF-2
           OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
           GN=infB PE=3 SV=1
          Length = 930

 Score = 31.2 bits (69), Expect = 3.8
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = -2

Query: 431 PTNPEVI--KETLPEQPMEFTIAREEGREAQPEEPKVRPI*RKDQDQGLPPPEV*KEAMV 258
           P  P+V   K+T   +P +  +A+EE + A+P  PK   +  K Q +     +  +EA  
Sbjct: 62  PAAPKVSAEKKTEKSEPAKPAVAKEEAKPAEPVAPKTEKVAAKPQSRNF---KAEREARA 118

Query: 257 QEQGQ 243
           +EQ +
Sbjct: 119 KEQAE 123


>sp|Q04LW0|IF2_STRP2 Translation initiation factor IF-2
           OS=Streptococcus pneumoniae serotype 2 (strain D39 /
           NCTC 7466) GN=infB PE=3 SV=1
          Length = 930

 Score = 31.2 bits (69), Expect = 3.8
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = -2

Query: 431 PTNPEVI--KETLPEQPMEFTIAREEGREAQPEEPKVRPI*RKDQDQGLPPPEV*KEAMV 258
           P  P+V   K+T   +P +  +A+EE + A+P  PK   +  K Q +     +  +EA  
Sbjct: 62  PAAPKVSAEKKTEKSEPAKPAVAKEEAKPAEPVAPKTEKVAAKPQSRNF---KAEREARA 118

Query: 257 QEQGQ 243
           +EQ +
Sbjct: 119 KEQAE 123


>sp|Q9JL35|NSBP1_MOUSE Nucleosome-binding protein 1 OS=Mus musculus
           GN=Nsbp1 PE=1 SV=2
          Length = 406

 Score = 30.8 bits (68), Expect = 4.9
 Identities = 19/56 (33%), Positives = 29/56 (51%)
 Frame = -2

Query: 410 KETLPEQPMEFTIAREEGREAQPEEPKVRPI*RKDQDQGLPPPEV*KEAMVQEQGQ 243
           KE  PE+  +     E+G+E QPEE     +  +D ++G  P E  KE   +E G+
Sbjct: 263 KEGQPEEDGKEIHHEEDGKEGQPEEDGKEYLHEEDGEEG-QPKEDQKEGQPEEDGK 317


>sp|Q8VIG2|LKAP_RAT Limkain-b1 OS=Rattus norvegicus GN=Lkap PE=1
           SV=1
          Length = 1735

 Score = 30.8 bits (68), Expect = 5.0
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +1

Query: 247 PCSWTMASFYTSGGGSPWSWSFLHIGLTFGSSGCASLPSSRAIVNS 384
           PCS T+   + +    PW W F         SGC SLP     ++S
Sbjct: 9   PCSRTLGWLHQNNDAKPWLWKF---------SGCFSLPEQTLPLSS 45


>sp|Q8BJ34|LKAP_MOUSE Limkain-b1 OS=Mus musculus GN=Lkap PE=1 SV=2
          Length = 1730

 Score = 30.4 bits (67), Expect = 6.5
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = +1

Query: 247 PCSWTMASFYTSGGGSPWSWSFLHIGLTFGSSGCASLPSSRAIVNS 384
           PCS T+  F+      PW W F         SGC S P     ++S
Sbjct: 9   PCSRTLGWFHQDNDAKPWLWKF---------SGCFSRPEQTLPLSS 45
tr_hit_id A8XRK5
Definition tr|A8XRK5|A8XRK5_CAEBR Putative uncharacterized protein OS=Caenorhabditis briggsae
Align length 43
Score (bit) 35.8
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912237|Adiantum capillus-veneris mRNA, clone:
YMU001_000016_G01.
         (570 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8XRK5|A8XRK5_CAEBR Putative uncharacterized protein OS=Caeno...    36   1.7  
tr|B5UPB3|B5UPB3_BACCE Cell surface protein OS=Bacillus cereus A...    35   2.9  
tr|Q67WE1|Q67WE1_ORYSJ cDNA clone:001-020-F01, full insert seque...    35   3.8  
tr|B8B0I6|B8B0I6_ORYSI Putative uncharacterized protein OS=Oryza...    35   3.8  
tr|A3BDX2|A3BDX2_ORYSJ Putative uncharacterized protein OS=Oryza...    35   3.8  
tr|Q6HBX5|Q6HBX5_BACHK Putative uncharacterized protein OS=Bacil...    34   6.5  
tr|Q632D5|Q632D5_BACCZ Cell surface protein OS=Bacillus cereus (...    34   6.5  
tr|Q0RM17|Q0RM17_FRAAA Putative uncharacterized protein OS=Frank...    34   6.5  
tr|A0RKC0|A0RKC0_BACAH Putative uncharacterized protein OS=Bacil...    34   6.5  
tr|B7JDI5|B7JDI5_BACCE Conserved repeat domain protein OS=Bacill...    34   6.5  
tr|B3YQZ3|B3YQZ3_BACCE Cell surface protein OS=Bacillus cereus W...    34   6.5  
tr|Q4UCY9|Q4UCY9_THEAN Extensin (Proline-rich protein), putative...    34   6.5  
tr|Q6L2Q4|Q6L2Q4_PICTO Transporter OS=Picrophilus torridus GN=PT...    34   6.5  
tr|B2SR85|B2SR85_XANOP Filamentous haemagglutinin, N-terminal:Ad...    34   6.6  
tr|B8KC14|B8KC14_VIBPA ToxR OS=Vibrio parahaemolyticus 16 GN=VPM...    33   8.5  

>tr|A8XRK5|A8XRK5_CAEBR Putative uncharacterized protein
           OS=Caenorhabditis briggsae GN=CBG17666 PE=4 SV=1
          Length = 516

 Score = 35.8 bits (81), Expect = 1.7
 Identities = 17/43 (39%), Positives = 26/43 (60%)
 Frame = -3

Query: 361 KEGKHNQKSQK*GQYEERTKTKGYHHLKCRRRPWSRSKGKRRS 233
           K  KH +K +   +  ++ K+KG HH K R+   SRSK K++S
Sbjct: 14  KSNKHKRKKRAPSKVGKQHKSKGTHHKKGRKPSKSRSKSKKKS 56


>tr|B5UPB3|B5UPB3_BACCE Cell surface protein OS=Bacillus cereus AH1134
            GN=BCAH1134_5043 PE=4 SV=1
          Length = 3373

 Score = 35.0 bits (79), Expect = 2.9
 Identities = 23/60 (38%), Positives = 34/60 (56%)
 Frame = -2

Query: 431  PTNPEVIKETLPEQPMEFTIAREEGREAQPEEPKVRPI*RKDQDQGLPPPEV*KEAMVQE 252
            P  PEV  E  P++P E  +  EE +E  P+EP+V+P   KD  +    PEV  E +++E
Sbjct: 3274 PKEPEVKPED-PKEPKEPEVKPEEPKE--PKEPEVKPEEPKDLKKPEVKPEVRLEKLIKE 3330


>tr|Q67WE1|Q67WE1_ORYSJ cDNA clone:001-020-F01, full insert sequence
           OS=Oryza sativa subsp. japonica GN=P0523F01.30 PE=2 SV=1
          Length = 187

 Score = 34.7 bits (78), Expect = 3.8
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = -2

Query: 431 PTNPEVIKETLPEQPMEFTIAREEGREAQPEEPKVRPI*RKDQDQGLPP 285
           P  P+   +T P QP   T   +  RE  P +P+V+P   K Q Q  PP
Sbjct: 99  PYPPQPQGQTYPPQPQGETYQPQPQRETYPPQPQVQPYPPKPQGQPYPP 147


>tr|B8B0I6|B8B0I6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_23838 PE=4 SV=1
          Length = 308

 Score = 34.7 bits (78), Expect = 3.8
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = -2

Query: 431 PTNPEVIKETLPEQPMEFTIAREEGREAQPEEPKVRPI*RKDQDQGLPP 285
           P  P+   +T P QP   T   +  RE  P +P+V+P   K Q Q  PP
Sbjct: 220 PYPPQPQGQTYPPQPQGETYQPQPQRETYPPQPQVQPYPPKPQGQPYPP 268


>tr|A3BDX2|A3BDX2_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_021244 PE=4 SV=1
          Length = 295

 Score = 34.7 bits (78), Expect = 3.8
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = -2

Query: 431 PTNPEVIKETLPEQPMEFTIAREEGREAQPEEPKVRPI*RKDQDQGLPP 285
           P  P+   +T P QP   T   +  RE  P +P+V+P   K Q Q  PP
Sbjct: 185 PYPPQPQGQTYPPQPQGETYQPQPQRETYPPQPQVQPYPPKPQGQPYPP 233


>tr|Q6HBX5|Q6HBX5_BACHK Putative uncharacterized protein OS=Bacillus
            thuringiensis subsp. konkukian GN=BT9727_4640 PE=4 SV=1
          Length = 3471

 Score = 33.9 bits (76), Expect = 6.5
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
 Frame = -2

Query: 431  PTNPEVIKETLPEQPMEFTIAREEGREAQ-----PEEPKVRPI*RKDQDQGLPPPEV*KE 267
            P  PEV     PE P E  +  E+ +E +     P+EP+V+P   K+ +  L  PEV  E
Sbjct: 3368 PKEPEV----KPEDPKEPEVKPEDPKEPEVKPEDPKEPEVKPEDPKEPEVKLEKPEVRLE 3423

Query: 266  AMVQE 252
             +++E
Sbjct: 3424 KLIKE 3428


>tr|Q632D5|Q632D5_BACCZ Cell surface protein OS=Bacillus cereus
            (strain ZK / E33L) GN=BCE33L4659 PE=4 SV=1
          Length = 3472

 Score = 33.9 bits (76), Expect = 6.5
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
 Frame = -2

Query: 431  PTNPEVIKETLPEQPMEFTIAREEGREAQ-----PEEPKVRPI*RKDQDQGLPPPEV*KE 267
            P  PEV     PE P E  +  E+ +E +     P+EP+V+P   K+ +  L  PEV  E
Sbjct: 3369 PKEPEV----KPEDPKEPEVKPEDPKEPEVKPEDPKEPEVKPEDPKEPEVKLEKPEVRLE 3424

Query: 266  AMVQE 252
             +++E
Sbjct: 3425 KLIKE 3429


>tr|Q0RM17|Q0RM17_FRAAA Putative uncharacterized protein OS=Frankia
           alni (strain ACN14a) GN=FRAAL2791 PE=4 SV=1
          Length = 454

 Score = 33.9 bits (76), Expect = 6.5
 Identities = 16/29 (55%), Positives = 18/29 (62%)
 Frame = -2

Query: 404 TLPEQPMEFTIAREEGREAQPEEPKVRPI 318
           T P  PME  + RE GREAQ +   VRPI
Sbjct: 296 TFPPAPMEVVVFRERGREAQGKPEIVRPI 324


>tr|A0RKC0|A0RKC0_BACAH Putative uncharacterized protein OS=Bacillus
            thuringiensis (strain Al Hakam) GN=BALH_4466 PE=4 SV=1
          Length = 3588

 Score = 33.9 bits (76), Expect = 6.5
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
 Frame = -2

Query: 431  PTNPEVIKETLPEQPMEFTIAREEGREAQ-----PEEPKVRPI*RKDQDQGLPPPEV*KE 267
            P  PEV     PE P E  +  E+ +E +     P+EP+V+P   K+ +  L  PEV  E
Sbjct: 3485 PKEPEV----KPEDPKEPEVKPEDPKEPEVKPEDPKEPEVKPEDPKEPEVKLEKPEVRLE 3540

Query: 266  AMVQE 252
             +++E
Sbjct: 3541 KLIKE 3545


>tr|B7JDI5|B7JDI5_BACCE Conserved repeat domain protein OS=Bacillus
            cereus AH820 GN=BCAH820_5038 PE=4 SV=1
          Length = 3521

 Score = 33.9 bits (76), Expect = 6.5
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
 Frame = -2

Query: 431  PTNPEVIKETLPEQPMEFTIAREEGREAQ-----PEEPKVRPI*RKDQDQGLPPPEV*KE 267
            P  PEV     PE P E  +  E+ +E +     P+EP+V+P   K+ +  L  PEV  E
Sbjct: 3418 PKEPEV----KPEDPKEPEVKPEDPKEPEVKPEDPKEPEVKPEDPKEPEVKLEKPEVRLE 3473

Query: 266  AMVQE 252
             +++E
Sbjct: 3474 KLIKE 3478