BP912250
Clone id YMU001_000016_H03
Library
Length 558
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000016_H03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CGCAGGATGCTGTCAAAGAGAGACAGATGGAGTGCGTTTTAGAGGGAGTTGAGTGAGGTT
GCCACGACCTATACCAAGAGTCGGCCTTGGCAAGTGGATTTGGATCTTGTATACACATGG
TGTGAGTATCACACACCAATGATTTGGCTGCATTTGGGTCGACATGGGTACACGATTCGA
CATTTTAAAGTTTCAAAGAAGTTACACACTTCTCTCAGAGTCGAGCCAGGAGTGATTCCC
TTGACAAAAAAAGCACATGGATTGCATGTTTCCAAAGTATTGAGGAGGCATGTTTAGTGT
CAAGGTGGTCCAAGGCTTGGAACACTCAAATGTTGGTCAAAGAGGGATAGATGGAGTACA
TTTCAAAGGGAGTTGAGTGAGGCTGCATCGGCCTATATGGAGAGCCAACCTTGGCTAGTG
GGTTTGCATATACCCATGGAGTGAGCAGCACACAAAAATGATGTGACTGAATTTGGGTCA
CCTTTGCTATAGTTTGACGACGATGAAAAAATGCAGCGGATTTCAGAGAAAATGCATATT
ACTCTCAAAGTCGAGCAA
■■Homology search results ■■ -
sp_hit_id P87126
Definition sp|P87126|CWC2_SCHPO Pre-mRNA-splicing factor cwc2 OS=Schizosaccharomyces pombe
Align length 39
Score (bit) 33.1
E-value 0.94
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912250|Adiantum capillus-veneris mRNA, clone:
YMU001_000016_H03.
(558 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P87126|CWC2_SCHPO Pre-mRNA-splicing factor cwc2 OS=Schizosacc... 33 0.94
sp|Q9WC64|VIF_HV1S9 Virion infectivity factor OS=Human immunodef... 31 3.6
sp|Q4QRL3|CC88B_MOUSE Coiled-coil domain-containing protein 88B ... 31 3.6
sp|Q6VAB6|KSR2_HUMAN Kinase suppressor of Ras 2 OS=Homo sapiens ... 27 4.3
sp|P36099|YKD0_YEAST Putative uncharacterized protein YKL030W OS... 31 4.7
sp|Q73HR8|LEPA_WOLPM GTP-binding protein lepA OS=Wolbachia pipie... 30 6.2
sp|P0C1L8|VIF_HV1MP Virion infectivity factor OS=Human immunodef... 30 8.1
sp|Q5GRW9|LEPA_WOLTR GTP-binding protein lepA OS=Wolbachia sp. s... 30 8.1

>sp|P87126|CWC2_SCHPO Pre-mRNA-splicing factor cwc2
OS=Schizosaccharomyces pombe GN=cwf2 PE=1 SV=2
Length = 388

Score = 33.1 bits (74), Expect = 0.94
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -2

Query: 527 SEIRCIFSSSSNYSKGDPNSVTSFLCAAHSMGICKPTSQ 411
SE RC+ S S Y+K D N SF C + G+C S+
Sbjct: 93 SETRCVISRDSGYTKADKNP-GSFFCLYFARGMCSEGSK 130


>sp|Q9WC64|VIF_HV1S9 Virion infectivity factor OS=Human
immunodeficiency virus type 1 (isolate SE9173 group M
subtype J) GN=vif PE=2 SV=1
Length = 192

Score = 31.2 bits (69), Expect = 3.6
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 8/51 (15%)
Frame = +1

Query: 88 WQVDLDLVYTW---CEYHTPMI-----WLHLGRHGYTIRHFKVSKKLHTSL 216
WQVD + TW +YH + WL+ RH Y RH K+S ++H L
Sbjct: 11 WQVDRMRINTWKSLVKYHMNVSKKARQWLY--RHHYDSRHPKISSEVHIPL 59


>sp|Q4QRL3|CC88B_MOUSE Coiled-coil domain-containing protein 88B
OS=Mus musculus GN=Ccdc88b PE=2 SV=2
Length = 1481

Score = 31.2 bits (69), Expect = 3.6
Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Frame = +1

Query: 187 KVSKKLHTSLRV-EPGVIPLTKKAHGL--HVSKVLR--RHV*CQGGPRLGTLKCWSKRDR 351
K+ +K+ RV EPG +P TKK L V +++R R GGPRLG S
Sbjct: 1295 KLVEKIMDQYRVLEPGPLPRTKKGSWLADKVKRLIRPRREGALHGGPRLGADGAGSTESL 1354

Query: 352 WSTFQRELSEAASA 393
+ EL E A
Sbjct: 1355 GGPLETELPEGREA 1368


>sp|Q6VAB6|KSR2_HUMAN Kinase suppressor of Ras 2 OS=Homo sapiens
GN=KSR2 PE=1 SV=2
Length = 950

Score = 26.9 bits (58), Expect(2) = 4.3
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Frame = -3

Query: 505 HRRQTIAKVTQIQSHHFCVLLTPWVYANPLAKV----GSPYRPMQPHSTP 368
H QT+ K +I H V P +NP + SP P+ P +TP
Sbjct: 493 HISQTLPKTNKINKDHIPVPYQPDSSSNPSSTTSSTPSSPAPPLPPSATP 542



Score = 21.9 bits (45), Expect(2) = 4.3
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = -1

Query: 372 LPLKCTPSIPL*PTFECSKPWTTLTLNMPPQYFGNMQSMCFF 247
LP TP PL P+ +C++ N+P ++ + F
Sbjct: 536 LPPSATPPSPLHPSPQCTR--QQKNFNLPASHYYKYKQQFIF 575


>sp|P36099|YKD0_YEAST Putative uncharacterized protein YKL030W
OS=Saccharomyces cerevisiae GN=YKL030W PE=5 SV=1
Length = 201

Score = 30.8 bits (68), Expect = 4.7
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Frame = +1

Query: 70 YTKSRPWQVDLDLVYTWC-----EYHTPMIWLHLGRHGYTIRHFKVSKKLHTSLRVEPGV 234
+ K R W L VY W T +I L+ G H + + H K S K +L V PG
Sbjct: 63 FFKCRRW---LCFVYNWLVCTDGSCWTLIIGLYTGSHIWALTHCKHSSKSRGTLTVSPGA 119

Query: 235 IPLT 246
P T
Sbjct: 120 PPGT 123


>sp|Q73HR8|LEPA_WOLPM GTP-binding protein lepA OS=Wolbachia
pipientis wMel GN=lepA PE=3 SV=1
Length = 598

Score = 30.4 bits (67), Expect = 6.2
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -1

Query: 318 KPWTTLTLNMPPQYFGNMQSMC 253
+PW T T+ +P QY G++ S+C
Sbjct: 401 EPWITATIMVPDQYLGDILSLC 422


>sp|P0C1L8|VIF_HV1MP Virion infectivity factor OS=Human
immunodeficiency virus type 1 (isolate MP255 group M
subtype F2) GN=vif PE=2 SV=1
Length = 193

Score = 30.0 bits (66), Expect = 8.1
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Frame = +1

Query: 88 WQVDLDLVYTW---CEYHTPMI-----WLHLGRHGYTIRHFKVSKKLHTSLRVEPGVIPL 243
WQVD + TW ++H + W + RH Y RH KVS ++H L + ++ +
Sbjct: 11 WQVDRMRIRTWNSLVKHHMYVSRRAKGWFY--RHHYESRHPKVSSEVHIPLEDDSKLVII 68

Query: 244 TKKAHGLHVSK 276
T GLH +
Sbjct: 69 T--YWGLHTGE 77


>sp|Q5GRW9|LEPA_WOLTR GTP-binding protein lepA OS=Wolbachia sp.
subsp. Brugia malayi (strain TRS) GN=lepA PE=3 SV=1
Length = 598

Score = 30.0 bits (66), Expect = 8.1
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -1

Query: 318 KPWTTLTLNMPPQYFGNMQSMC 253
+PW T T+ +P QY G + S+C
Sbjct: 401 EPWITATIMVPDQYLGEILSLC 422


tr_hit_id B0E741
Definition tr|B0E741|B0E741_ENTDI Putative uncharacterized protein OS=Entamoeba dispar SAW760
Align length 55
Score (bit) 38.9
E-value 0.19
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912250|Adiantum capillus-veneris mRNA, clone:
YMU001_000016_H03.
(558 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B0E741|B0E741_ENTDI Putative uncharacterized protein OS=Entam... 39 0.19

>tr|B0E741|B0E741_ENTDI Putative uncharacterized protein
OS=Entamoeba dispar SAW760 GN=EDI_060580 PE=4 SV=1
Length = 392

Score = 38.9 bits (89), Expect = 0.19
Identities = 20/55 (36%), Positives = 30/55 (54%)
Frame = -3

Query: 496 QTIAKVTQIQSHHFCVLLTPWVYANPLAKVGSPYRPMQPHSTPFEMYSIYPSLTN 332
Q I ++ + H VLLT +Y NPL+++ Y P+ H P + SIY S+ N
Sbjct: 59 QRIFGISMVYPSHCIVLLTNSLYFNPLSQLLKAYYPLFSHPNPQLLTSIYNSMNN 113