BP912251
Clone id YMU001_000016_H04
Library
Length 568
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000016_H04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
TTTTTTTGATTGGGTTTTTACACAGAGAAAAGCCTTCACTTTTATTAGAAGACAGCATCC
TTTCACAAGCATAAAACTCATTAGCAAATGAGCATACCTAATTCTCCATGAGAACCTTGT
CCTGTGCACAAAGAGAAACTCAGAGTCCGACCCTTCAAGCGGTAGGCCCTGAAGATACCA
CAAGTTGTTAGAAATCATACACTAGAGGTGAAAGAAACCCCACATTGTTCCACATCCTCG
TGAGAGAGAGGGGCCCCTTTGCATGAATGAGTGCACCGGTAGGCTGCATGAGTGCAAGTC
GAGCTTTTAGATGGTCCGGTAAAGGGGCACTCTCTGACAAAATACTGGACTTCCATGGCA
CTTGCATGATGCTTCATGCATTTTGGGCCGCATGGTAAGCCACTACCTTCTGCGGGTCAC
CAAGAAGAAATCATTGGAAAGCAACCCAGACTTATGACTCACGCTGGTTTTGGCCATTTC
TGTCCACCTCCCTGTTTTAAAGCAAGCTAAGATCGTCGCTGATAAACCGAATTCGGCGGG
AGATGAGCCACCGAGACAGTGCAGCAAC
■■Homology search results ■■ -
sp_hit_id Q9H6R0
Definition sp|Q9H6R0|DHX33_HUMAN Putative ATP-dependent RNA helicase DHX33 OS=Homo sapiens
Align length 45
Score (bit) 32.0
E-value 2.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912251|Adiantum capillus-veneris mRNA, clone:
YMU001_000016_H04.
(568 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9H6R0|DHX33_HUMAN Putative ATP-dependent RNA helicase DHX33 ... 32 2.2
sp|Q5IGR6|EXT1C_DANRE Exostosin-1c OS=Danio rerio GN=ext1c PE=2 ... 31 4.9
sp|Q80VY9|DHX33_MOUSE Putative ATP-dependent RNA helicase DHX33 ... 31 4.9
sp|P06134|ADA_ECOLI Regulatory protein ada OS=Escherichia coli (... 30 6.4
sp|Q8AW93|DTX1_XENLA Protein deltex-1 OS=Xenopus laevis GN=dtx1 ... 30 8.3

>sp|Q9H6R0|DHX33_HUMAN Putative ATP-dependent RNA helicase DHX33
OS=Homo sapiens GN=DHX33 PE=1 SV=1
Length = 707

Score = 32.0 bits (71), Expect = 2.2
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = -1

Query: 367 MQVPWKSSILSESAPLPDHLKARLALMQPTGALIHAKGPLSLTRM 233
M+VP + S P PDH++A +A + GAL H L+LT M
Sbjct: 449 MKVPNVLTFDFMSKPSPDHIQAAIAQLDLLGALEHKDDQLTLTPM 493


>sp|Q5IGR6|EXT1C_DANRE Exostosin-1c OS=Danio rerio GN=ext1c PE=2
SV=1
Length = 737

Score = 30.8 bits (68), Expect = 4.9
Identities = 26/78 (33%), Positives = 30/78 (38%), Gaps = 7/78 (8%)
Frame = -3

Query: 554 SVAHLPPNSVYQRRS*LALKQGGGQK---WPKPA*VIS-LGCFPMISSW---*PAEGSGL 396
SVAHLPP V QR+ + G K W P C SSW P E S
Sbjct: 654 SVAHLPPVKVAQRKQYKEMPSLQGTKMAPWANPEHFTQRQECVNTFSSWFGYMPLEHSQF 713

Query: 395 PCGPKCMKHHASAMEVQY 342
P K H S + +Y
Sbjct: 714 RLDPVLFKDHVSVLRKRY 731


>sp|Q80VY9|DHX33_MOUSE Putative ATP-dependent RNA helicase DHX33
OS=Mus musculus GN=Dhx33 PE=1 SV=1
Length = 698

Score = 30.8 bits (68), Expect = 4.9
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = -1

Query: 367 MQVPWKSSILSESAPLPDHLKARLALMQPTGALIHAKGPLSLT 239
M+VP + S P PDH++A +A + GAL H L+LT
Sbjct: 440 MKVPNVLTFDFMSKPSPDHIEAAIAQLDLLGALEHKDDQLTLT 482


>sp|P06134|ADA_ECOLI Regulatory protein ada OS=Escherichia coli
(strain K12) GN=ada PE=1 SV=2
Length = 354

Score = 30.4 bits (67), Expect = 6.4
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 10/59 (16%)
Frame = -3

Query: 404 SGLPCGPKCMKHHASAMEVQYFV----------RECPFTGPSKSSTCTHAAYRCTHSCK 258
+G+ C P C HA V ++ R C P K++ H + TH+C+
Sbjct: 34 TGIFCRPSCRARHALRENVSFYANASEALAAGFRPCKRCQPEKANAQQHRLDKITHACR 92


>sp|Q8AW93|DTX1_XENLA Protein deltex-1 OS=Xenopus laevis GN=dtx1
PE=2 SV=1
Length = 623

Score = 30.0 bits (66), Expect = 8.3
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -3

Query: 455 ISLGCFPMISSW*PAEGSGLPCG-PKCM 375
+++G P SW GSGLPC P+C+
Sbjct: 178 LTMGSIPKSQSWPVGSGSGLPCSCPQCL 205


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912251|Adiantum capillus-veneris mRNA, clone:
YMU001_000016_H04.
(568 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******