NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912252
Clone id YMU001_000016_H05
Library
Length 482
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000016_H05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GTGAGATACCACTCTAGAAGAACTAGAATGCTAACCTTGTGTCAAGAATTACGGACCAAG
AGACAGTCCCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAGAGTAACGGAGGCA
CGCAAAGGTTTCCTCAGGCTGGACGGAAATCAGGCTACGAGTGCAAAGGCAGAAGGGAGC
TTGACTGCGAGACCTACCAGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGGTT
CCAAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATAACAGGCTGATCT
TCCCCAAGAGTTCACATCGACGGGAAGGTTTGGCACCTCGATGTCGGCTCTTCGCCACCT
GGGGCGGTAGTACGTCCCAAGGGTTGGGCTGTTCGCCCATTAAAGCGGTACGTGAGCTGG
GTTCAGAACGTCGTGAGACAGTGCGGTCCATATCCGGTGCGGGCGCTATAGCATTGAGGG
GA
■■Homology search results ■■ -
sp_hit_id Q9PLI5
Definition sp|Q9PLI5|Y114_CHLMU Uncharacterized protein TC_0114 OS=Chlamydia muridarum
Align length 85
Score (bit) 93.6
E-value 4.0e-19
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912252|Adiantum capillus-veneris mRNA, clone:
YMU001_000016_H05.
         (482 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9PLI5|Y114_CHLMU Uncharacterized protein TC_0114 OS=Chlamydi...    94   4e-19
sp|P70906|VLP18_BORHE Variable large protein 18 OS=Borrelia herm...    35   0.18 
sp|O10312|Y054_NPVOP Uncharacterized 42.5 kDa protein OS=Orgyia ...    32   1.5  
sp|Q250N9|RPOC_DESHY DNA-directed RNA polymerase subunit beta' O...    30   5.7  
sp|Q7Z5P9|MUC19_HUMAN Mucin-19 OS=Homo sapiens GN=MUC19 PE=1 SV=2      29   9.8  

>sp|Q9PLI5|Y114_CHLMU Uncharacterized protein TC_0114 OS=Chlamydia
           muridarum GN=TC_0114 PE=4 SV=2
          Length = 122

 Score = 93.6 bits (231), Expect = 4e-19
 Identities = 48/85 (56%), Positives = 52/85 (61%)
 Frame = -2

Query: 481 PLNAIAPAPDMDRTVSRRSEPSSRTALMGEQPNPWDVLPPQVAKSRHRGAKPSRRCXXXX 302
           PL   AP  D D+TVSRR EPSSRTAL+GEQPNPWD+L PQ A SRHRGAKP RR     
Sbjct: 38  PLKYPAPTKDRDQTVSRRFEPSSRTALIGEQPNPWDLLQPQDAMSRHRGAKPPRRYELLV 97

Query: 301 XXXXXXXXXXXXXERRPFHLEPSDH 227
                        +RR FH  P DH
Sbjct: 98  AISLLSPEYLLSVKRRRFHFPPPDH 122


>sp|P70906|VLP18_BORHE Variable large protein 18 OS=Borrelia hermsii
           GN=vlp18 PE=3 SV=1
          Length = 360

 Score = 35.0 bits (79), Expect = 0.18
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = +1

Query: 142 DGNQATSAKAEGSLTARPTSRAGTKVGLSDPTVPSGRAVA 261
           +G+QA  A A+G+ TA   ++ GTK  LS+   P   AVA
Sbjct: 250 EGDQALGAAADGTTTAMSFAKGGTKDNLSNANTPKAAAVA 289


>sp|O10312|Y054_NPVOP Uncharacterized 42.5 kDa protein OS=Orgyia
           pseudotsugata multicapsid polyhedrosis virus GN=ORF58
           PE=4 SV=1
          Length = 378

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 21/68 (30%), Positives = 33/68 (48%)
 Frame = +1

Query: 226 SDPTVPSGRAVAQRIKVTLGITG*SSPRVHIDGKVWHLDVGSSPPGAVVRPKGWAVRPLK 405
           S+P + S  + A  +  TLG    +  RV+       L  G +PPG ++ P    V+ + 
Sbjct: 246 SNPFIISENSSASVVLRTLGKCPDNPERVNC----CKLSYGGAPPGHLMCPPRAIVKKIY 301

Query: 406 RYVSWVQN 429
           RYV+W  N
Sbjct: 302 RYVNWASN 309


>sp|Q250N9|RPOC_DESHY DNA-directed RNA polymerase subunit beta'
           OS=Desulfitobacterium hafniense (strain Y51) GN=rpoC
           PE=3 SV=1
          Length = 1161

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 18/38 (47%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
 Frame = +1

Query: 136 RLDGNQATSAKAEG--SLTARPTSRAGTKVGLSDPTVP 243
           RL G +AT+   +G  SL  + ++RAG  VGL+D TVP
Sbjct: 591 RLGGYKATAQLLDGIKSLGFKYSTRAGMTVGLADITVP 628


>sp|Q7Z5P9|MUC19_HUMAN Mucin-19 OS=Homo sapiens GN=MUC19 PE=1 SV=2
          Length = 6254

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 23/78 (29%), Positives = 33/78 (42%)
 Frame = +1

Query: 145  GNQATSAKAEGSLTARPTSRAGTKVGLSDPTVPSGRAVAQRIKVTLGITG*SSPRVHIDG 324
            G  ATS+++  S T  P+   G K G +     S   ++     +LG T  S   +    
Sbjct: 1213 GASATSSESSKSGTTGPS--VGGKTGATSSEATSSEGMSGVTGQSLGSTAGSDSEITAKT 1270

Query: 325  KVWHLDVGSSPPGAVVRP 378
                   GSSPPG + RP
Sbjct: 1271 SF----TGSSPPGKLTRP 1284
tr_hit_id Q4EE25
Definition tr|Q4EE25|Q4EE25_LISMO Putative uncharacterized protein OS=Listeria monocytogenes str. 4b H7858
Align length 109
Score (bit) 180.0
E-value 4.0e-44
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912252|Adiantum capillus-veneris mRNA, clone:
YMU001_000016_H05.
         (482 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4EE25|Q4EE25_LISMO Putative uncharacterized protein OS=Liste...   180   4e-44
tr|A5ZQM3|A5ZQM3_9FIRM Putative uncharacterized protein OS=Rumin...   176   5e-43
tr|Q848W1|Q848W1_BACME Putative uncharacterized protein OS=Bacil...   162   1e-38
tr|A5ZYK8|A5ZYK8_9FIRM Putative uncharacterized protein OS=Rumin...   157   2e-37
tr|B6G1S6|B6G1S6_9CLOT Putative uncharacterized protein OS=Clost...   143   4e-33
tr|A0Q208|A0Q208_CLONN Putative uncharacterized protein OS=Clost...   143   5e-33
tr|A0PXN7|A0PXN7_CLONN Putative uncharacterized protein OS=Clost...   143   5e-33
tr|B1BEF3|B1BEF3_CLOBO Putative uncharacterized protein (Fragmen...   143   5e-33
tr|B1BEE0|B1BEE0_CLOBO Putative uncharacterized protein OS=Clost...   143   5e-33
tr|B1BE06|B1BE06_CLOBO Putative uncharacterized protein OS=Clost...   143   5e-33
tr|B1QFN6|B1QFN6_CLOBO Putative uncharacterized protein OS=Clost...   139   7e-32
tr|B1QFL7|B1QFL7_CLOBO Putative uncharacterized protein (Fragmen...   139   7e-32
tr|B1RTR7|B1RTR7_CLOPE Putative uncharacterized protein OS=Clost...   139   9e-32
tr|B1RKU9|B1RKU9_CLOPE Putative uncharacterized protein OS=Clost...   139   9e-32
tr|B1RCB4|B1RCB4_CLOPE Putative uncharacterized protein OS=Clost...   139   9e-32
tr|B1BTI8|B1BTI8_CLOPE Putative uncharacterized protein OS=Clost...   139   9e-32
tr|B1BLN6|B1BLN6_CLOPE Putative uncharacterized protein OS=Clost...   139   9e-32
tr|B1BEX7|B1BEX7_CLOPE Putative uncharacterized protein OS=Clost...   139   9e-32
tr|Q877Q8|Q877Q8_CLOTE Putative uncharacterized protein OS=Clost...   135   8e-31
tr|A7DZU9|A7DZU9_CLOSP Hypothetical CTC00065-like protein OS=Clo...   135   8e-31
tr|B2E6W4|B2E6W4_STRPN Putative uncharacterized protein OS=Strep...   134   2e-30
tr|B1C1N3|B1C1N3_9FIRM Putative uncharacterized protein OS=Clost...   134   2e-30
tr|Q8CQV6|Q8CQV6_STAES Putative uncharacterized protein OS=Staph...   131   2e-29
tr|B5HM15|B5HM15_9ACTO Putative uncharacterized protein OS=Strep...   129   6e-29
tr|B5G7E4|B5G7E4_9ACTO Putative uncharacterized protein OS=Strep...   129   6e-29
tr|A8R9P5|A8R9P5_9FIRM Putative uncharacterized protein OS=Eubac...   129   6e-29
tr|B4V362|B4V362_9ACTO Putative uncharacterized protein OS=Strep...   127   2e-28
tr|A5Z309|A5Z309_9FIRM Putative uncharacterized protein OS=Eubac...   125   8e-28
tr|B0A9C5|B0A9C5_9CLOT Putative uncharacterized protein OS=Clost...   121   1e-26
tr|B0A7G5|B0A7G5_9CLOT Putative uncharacterized protein OS=Clost...   121   1e-26

>tr|Q4EE25|Q4EE25_LISMO Putative uncharacterized protein OS=Listeria
           monocytogenes str. 4b H7858 GN=LMOh7858_1903 PE=4 SV=1
          Length = 112

 Score =  180 bits (456), Expect = 4e-44
 Identities = 88/109 (80%), Positives = 94/109 (86%)
 Frame = +1

Query: 139 LDGNQATSAKAEGSLTARPTSRAGTKVGLSDPTVPSGRAVAQRIKVTLGITG*SSPRVHI 318
           +DGN + S KA+GSLTAR TSRAGTKVGLSDP VP GRA+AQRIK T GITG S PRVHI
Sbjct: 1   MDGNHSQSVKAQGSLTARLTSRAGTKVGLSDPVVPHGRAIAQRIKATPGITGLSPPRVHI 60

Query: 319 DGKVWHLDVGSSPPGAVVRPKGWAVRPLKRYVSWVQNVVRQCGPYPVRA 465
           DG+VWHLDVGSS PGAVV PKGWAVRPLKR+ SWVQNVVRQ GPYP RA
Sbjct: 61  DGEVWHLDVGSSHPGAVVGPKGWAVRPLKRHASWVQNVVRQFGPYPSRA 109


>tr|A5ZQM3|A5ZQM3_9FIRM Putative uncharacterized protein
           OS=Ruminococcus obeum ATCC 29174 GN=RUMOBE_01295 PE=4
           SV=1
          Length = 109

 Score =  176 bits (446), Expect = 5e-43
 Identities = 88/109 (80%), Positives = 90/109 (82%)
 Frame = +1

Query: 139 LDGNQATSAKAEGSLTARPTSRAGTKVGLSDPTVPSGRAVAQRIKVTLGITG*SSPRVHI 318
           +DGN   SAKAEGSLTA PT  AGTKVGLSDP V SG A+AQRIK TLGITG S PRVHI
Sbjct: 1   MDGNHPKSAKAEGSLTATPTGGAGTKVGLSDPVVLSGNAIAQRIKATLGITGLSLPRVHI 60

Query: 319 DGKVWHLDVGSSPPGAVVRPKGWAVRPLKRYVSWVQNVVRQCGPYPVRA 465
           DG VWHLDVGSS PGAVV PKGWAVRPLKRY SWVQNVVRQ GPYP  A
Sbjct: 61  DGVVWHLDVGSSHPGAVVGPKGWAVRPLKRYASWVQNVVRQFGPYPAWA 109


>tr|Q848W1|Q848W1_BACME Putative uncharacterized protein OS=Bacillus
           megaterium PE=4 SV=1
          Length = 95

 Score =  162 bits (409), Expect = 1e-38
 Identities = 78/92 (84%), Positives = 81/92 (88%)
 Frame = +1

Query: 181 LTARPTSRAGTKVGLSDPTVPSGRAVAQRIKVTLGITG*SSPRVHIDGKVWHLDVGSSPP 360
           +TAR TSRAGTKVGLSDP VP GRA+AQRIK T GITG S PRVHIDG+VWHLDVGSS P
Sbjct: 1   MTARTTSRAGTKVGLSDPVVPHGRAIAQRIKATPGITGLSPPRVHIDGEVWHLDVGSSHP 60

Query: 361 GAVVRPKGWAVRPLKRYVSWVQNVVRQCGPYP 456
           GAVV PKGWAVRPLKRY SWVQNVVRQ GPYP
Sbjct: 61  GAVVGPKGWAVRPLKRYASWVQNVVRQFGPYP 92


>tr|A5ZYK8|A5ZYK8_9FIRM Putative uncharacterized protein
           OS=Ruminococcus obeum ATCC 29174 GN=RUMOBE_04125 PE=4
           SV=1
          Length = 108

 Score =  157 bits (398), Expect = 2e-37
 Identities = 79/100 (79%), Positives = 82/100 (82%)
 Frame = +1

Query: 166 KAEGSLTARPTSRAGTKVGLSDPTVPSGRAVAQRIKVTLGITG*SSPRVHIDGKVWHLDV 345
           ++ GSLTA PT  AGTKVGLSDP V SG A+AQRIK TLGITG S PRVHIDG VWHLDV
Sbjct: 9   QSRGSLTATPTGGAGTKVGLSDPVVLSGNAIAQRIKATLGITGLSLPRVHIDGVVWHLDV 68

Query: 346 GSSPPGAVVRPKGWAVRPLKRYVSWVQNVVRQCGPYPVRA 465
           GSS PGAVV  KGWAVRPLKRY SWVQNVVRQ GPYP  A
Sbjct: 69  GSSHPGAVVGLKGWAVRPLKRYASWVQNVVRQFGPYPAWA 108


>tr|B6G1S6|B6G1S6_9CLOT Putative uncharacterized protein
           OS=Clostridium hiranonis DSM 13275 GN=CLOHIR_02084 PE=4
           SV=1
          Length = 169

 Score =  143 bits (361), Expect = 4e-33
 Identities = 72/103 (69%), Positives = 78/103 (75%)
 Frame = +1

Query: 157 TSAKAEGSLTARPTSRAGTKVGLSDPTVPSGRAVAQRIKVTLGITG*SSPRVHIDGKVWH 336
           T  K    L  +    +  +VGLSDP V SGRA+AQRIK TLGITG S PRVHIDG+VWH
Sbjct: 67  TECKGIRELDCKTYRSSKDEVGLSDPVVLSGRAIAQRIKATLGITGLSPPRVHIDGEVWH 126

Query: 337 LDVGSSPPGAVVRPKGWAVRPLKRYVSWVQNVVRQCGPYPVRA 465
           LDVGSS PGAVV PKGWAVRPLK Y SWVQNVVRQ GPYP +A
Sbjct: 127 LDVGSSHPGAVVGPKGWAVRPLKWYASWVQNVVRQFGPYPSQA 169



 Score = 66.2 bits (160), Expect = 7e-10
 Identities = 31/46 (67%), Positives = 34/46 (73%)
 Frame = +3

Query: 63  TVPGRQFLWGVGLPKSNGGTQRFPQAGRKSGYECKGRRELDCETYQ 200
           T+ G QF WG  LPK NGG QRF Q GRKS  ECKG RELDC+TY+
Sbjct: 36  TLSGGQFDWGGRLPKGNGGAQRFSQHGRKSCTECKGIRELDCKTYR 81


>tr|A0Q208|A0Q208_CLONN Putative uncharacterized protein
           OS=Clostridium novyi (strain NT) GN=NT01CX_0152 PE=4
           SV=1
          Length = 213

 Score =  143 bits (360), Expect = 5e-33
 Identities = 70/98 (71%), Positives = 76/98 (77%)
 Frame = -3

Query: 354 RRADIEVPNLPVDVNSWGRSACYP*SNFYPLSDGPSTWNRRITKADFRPCSTGRSRSQAP 175
           RRADIEVPNLPVDV+SWGRSACYP  +FYPLSDGPS  N RITK DFRPCST   RSQAP
Sbjct: 2   RRADIEVPNLPVDVDSWGRSACYPRGSFYPLSDGPSIQNHRITKPDFRPCSTCMCRSQAP 61

Query: 174 FCLCTRSLISVQPEETFACLRYSLGGLRPIETVYLGLS 61
           FCLCT   IS + E TF  LRY LGG RP +T +L +S
Sbjct: 62  FCLCTLRAISDRAEGTFGRLRYLLGGDRPSQTAHLAMS 99


>tr|A0PXN7|A0PXN7_CLONN Putative uncharacterized protein
           OS=Clostridium novyi (strain NT) GN=NT01CX_0251 PE=4
           SV=1
          Length = 213

 Score =  143 bits (360), Expect = 5e-33
 Identities = 70/98 (71%), Positives = 76/98 (77%)
 Frame = -3

Query: 354 RRADIEVPNLPVDVNSWGRSACYP*SNFYPLSDGPSTWNRRITKADFRPCSTGRSRSQAP 175
           RRADIEVPNLPVDV+SWGRSACYP  +FYPLSDGPS  N RITK DFRPCST   RSQAP
Sbjct: 2   RRADIEVPNLPVDVDSWGRSACYPRGSFYPLSDGPSIQNHRITKPDFRPCSTCMCRSQAP 61

Query: 174 FCLCTRSLISVQPEETFACLRYSLGGLRPIETVYLGLS 61
           FCLCT   IS + E TF  LRY LGG RP +T +L +S
Sbjct: 62  FCLCTLRAISDRAEGTFGRLRYLLGGDRPSQTAHLAMS 99


>tr|B1BEF3|B1BEF3_CLOBO Putative uncharacterized protein (Fragment)
           OS=Clostridium botulinum C str. Eklund GN=CBC_A1887 PE=4
           SV=1
          Length = 107

 Score =  143 bits (360), Expect = 5e-33
 Identities = 70/98 (71%), Positives = 76/98 (77%)
 Frame = -3

Query: 354 RRADIEVPNLPVDVNSWGRSACYP*SNFYPLSDGPSTWNRRITKADFRPCSTGRSRSQAP 175
           RRADIEVPNLPVDV+SWGRSACYP  +FYPLSDGPS  N RITK DFRPCST   RSQAP
Sbjct: 2   RRADIEVPNLPVDVDSWGRSACYPRGSFYPLSDGPSIQNHRITKPDFRPCSTCMCRSQAP 61

Query: 174 FCLCTRSLISVQPEETFACLRYSLGGLRPIETVYLGLS 61
           FCLCT   IS + E TF  LRY LGG RP +T +L +S
Sbjct: 62  FCLCTLRAISDRAEGTFGRLRYLLGGDRPSQTAHLAMS 99


>tr|B1BEE0|B1BEE0_CLOBO Putative uncharacterized protein
           OS=Clostridium botulinum C str. Eklund GN=CBC_A1890 PE=4
           SV=1
          Length = 210

 Score =  143 bits (360), Expect = 5e-33
 Identities = 70/98 (71%), Positives = 76/98 (77%)
 Frame = -3

Query: 354 RRADIEVPNLPVDVNSWGRSACYP*SNFYPLSDGPSTWNRRITKADFRPCSTGRSRSQAP 175
           RRADIEVPNLPVDV+SWGRSACYP  +FYPLSDGPS  N RITK DFRPCST   RSQAP
Sbjct: 2   RRADIEVPNLPVDVDSWGRSACYPRGSFYPLSDGPSIQNHRITKPDFRPCSTCMCRSQAP 61

Query: 174 FCLCTRSLISVQPEETFACLRYSLGGLRPIETVYLGLS 61
           FCLCT   IS + E TF  LRY LGG RP +T +L +S
Sbjct: 62  FCLCTLRAISDRAEGTFGRLRYLLGGDRPSQTAHLAMS 99


>tr|B1BE06|B1BE06_CLOBO Putative uncharacterized protein
           OS=Clostridium botulinum C str. Eklund GN=CBC_0392 PE=4
           SV=1
          Length = 213

 Score =  143 bits (360), Expect = 5e-33
 Identities = 70/98 (71%), Positives = 76/98 (77%)
 Frame = -3

Query: 354 RRADIEVPNLPVDVNSWGRSACYP*SNFYPLSDGPSTWNRRITKADFRPCSTGRSRSQAP 175
           RRADIEVPNLPVDV+SWGRSACYP  +FYPLSDGPS  N RITK DFRPCST   RSQAP
Sbjct: 2   RRADIEVPNLPVDVDSWGRSACYPRGSFYPLSDGPSIQNHRITKPDFRPCSTCMCRSQAP 61

Query: 174 FCLCTRSLISVQPEETFACLRYSLGGLRPIETVYLGLS 61
           FCLCT   IS + E TF  LRY LGG RP +T +L +S
Sbjct: 62  FCLCTLRAISDRAEGTFGRLRYLLGGDRPSQTAHLAMS 99