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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912255
Clone id YMU001_000016_H08
Library
Length 502
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000016_H08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ACTTTGCTCAACTGTTGCAGTCTGCGGTGGAAAGCATTTAGCATCGCGCATCTCAGAAAA
AACTGTAGCAACTTGTGGTGGTTTGGTCTTTTTTGCATTTGGAATTCATTCTTTATTGTC
TGGTGGAGATTAGTGCTGTCCACCTCTGTATTCTACTTTTGTCCAGGTCCACCACCAAAT
TTCTGGACCTGCAGGCTATCTCCAGGAATGGAGGATTGGGCACTATTCTTTTCTTATGCT
ATCCTCTGATTTTAATGTCGGTTTTTATGCCAATCCTTGATCAGCAGTGACCTCAGAGGA
TGGGTTTTGTAATTGACCTACTGTGATTTGCACTGCTCAAATAAATTGGTAATGTGCAGA
TGTATGGAAGAGGTTATGATATCCTTCTTTCTGCTGTAAGAGATGGAACAGTATGAGTGG
GTGAATATGGTTTGTAACGTGTGCTGTCTGTTTTATACAATGCAAGACTGTGCGATGTTA
TCGAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P52876
Definition sp|P52876|Y615_SYNY3 UPF0016 membrane protein sll0615 OS=Synechocystis sp. (strain PCC 6803)
Align length 37
Score (bit) 46.2
E-value 7.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912255|Adiantum capillus-veneris mRNA, clone:
YMU001_000016_H08.
         (470 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P52876|Y615_SYNY3 UPF0016 membrane protein sll0615 OS=Synecho...    46   7e-05
sp|Q9HC07|TM165_HUMAN Transmembrane protein 165 OS=Homo sapiens ...    41   0.002
sp|Q4V899|TM165_RAT Transmembrane protein 165 OS=Rattus norvegic...    40   0.004
sp|P52875|TM165_MOUSE Transmembrane protein 165 OS=Mus musculus ...    40   0.004
sp|P38301|YB37_YEAST UPF0016 membrane protein YBR187W OS=Sacchar...    38   0.020
sp|Q9P7Q0|YLY5_SCHPO UPF0016 membrane protein C186.05c OS=Schizo...    34   0.28 
sp|Q10320|YD68_SCHPO UPF0016 membrane protein C17G8.08c OS=Schiz...    34   0.37 
sp|Q81V75|CLS1_BACAN Cardiolipin synthetase 1 OS=Bacillus anthra...    33   0.48 
sp|Q81I00|CLS1_BACCR Cardiolipin synthetase 1 OS=Bacillus cereus...    32   1.8  
sp|Q09GK0|CLECB_PHIOL C-type lectin subunit B OS=Philodryas olfe...    32   1.8  

>sp|P52876|Y615_SYNY3 UPF0016 membrane protein sll0615
           OS=Synechocystis sp. (strain PCC 6803) GN=sll0615 PE=3
           SV=1
          Length = 206

 Score = 46.2 bits (108), Expect = 7e-05
 Identities = 20/37 (54%), Positives = 27/37 (72%)
 Frame = +2

Query: 2   LCSTVAVCGGKHLASRISEKTVATCGGLVFFAFGIHS 112
           +C+ +AV GGK +A RISEKTV   GGL+F+ F + S
Sbjct: 164 ICAVIAVMGGKFVAGRISEKTVTLIGGLLFYLFAVVS 200


>sp|Q9HC07|TM165_HUMAN Transmembrane protein 165 OS=Homo sapiens
           GN=TMEM165 PE=1 SV=1
          Length = 324

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 19/43 (44%), Positives = 27/43 (62%)
 Frame = +2

Query: 2   LCSTVAVCGGKHLASRISEKTVATCGGLVFFAFGIHSLLSGGD 130
           LC+ +AV GG+ +A +IS +TV   GG+VF AF   +L    D
Sbjct: 279 LCTGLAVIGGRMIAQKISVRTVTIIGGIVFLAFAFSALFISPD 321


>sp|Q4V899|TM165_RAT Transmembrane protein 165 OS=Rattus norvegicus
           GN=Tmem165 PE=2 SV=1
          Length = 323

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 18/38 (47%), Positives = 26/38 (68%)
 Frame = +2

Query: 2   LCSTVAVCGGKHLASRISEKTVATCGGLVFFAFGIHSL 115
           LC+ +AV GG+ +A +IS +TV   GG+VF AF   +L
Sbjct: 278 LCTGLAVIGGRMIAQKISVRTVTIIGGIVFLAFAFSAL 315


>sp|P52875|TM165_MOUSE Transmembrane protein 165 OS=Mus musculus
           GN=Tmem165 PE=2 SV=2
          Length = 323

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 18/38 (47%), Positives = 26/38 (68%)
 Frame = +2

Query: 2   LCSTVAVCGGKHLASRISEKTVATCGGLVFFAFGIHSL 115
           LC+ +AV GG+ +A +IS +TV   GG+VF AF   +L
Sbjct: 278 LCTGLAVIGGRMIAQKISVRTVTIIGGIVFLAFAFSAL 315


>sp|P38301|YB37_YEAST UPF0016 membrane protein YBR187W
           OS=Saccharomyces cerevisiae GN=YBR187W PE=1 SV=1
          Length = 280

 Score = 38.1 bits (87), Expect = 0.020
 Identities = 17/35 (48%), Positives = 24/35 (68%)
 Frame = +2

Query: 2   LCSTVAVCGGKHLASRISEKTVATCGGLVFFAFGI 106
           +CS +AV GGK LA+RIS +T+     L+FF F +
Sbjct: 235 ICSGLAVVGGKLLATRISIRTITLASSLLFFIFAL 269


>sp|Q9P7Q0|YLY5_SCHPO UPF0016 membrane protein C186.05c
           OS=Schizosaccharomyces pombe GN=SPAC186.05c PE=2 SV=1
          Length = 262

 Score = 34.3 bits (77), Expect = 0.28
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +2

Query: 2   LCSTVAVCGGKHLASRISEKTVATCGGLVFFAFGIHSLLSG 124
           LC+ VAV  G++++++I    V   GG+VF  FGI  +  G
Sbjct: 221 LCTMVAVIVGRYISNKIEMYKVLFFGGIVFMIFGILYIFQG 261


>sp|Q10320|YD68_SCHPO UPF0016 membrane protein C17G8.08c
           OS=Schizosaccharomyces pombe GN=SPAC17G8.08c PE=2 SV=1
          Length = 287

 Score = 33.9 bits (76), Expect = 0.37
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +2

Query: 5   CSTVAVCGGKHLASRISEKTVATCGGLVFFAFGI 106
           C+ +AV  GK+++++I    V   GG++F AFG+
Sbjct: 246 CTALAVISGKYISTKIKVHKVMFIGGILFIAFGL 279


>sp|Q81V75|CLS1_BACAN Cardiolipin synthetase 1 OS=Bacillus anthracis
           GN=cls1 PE=3 SV=1
          Length = 509

 Score = 33.5 bits (75), Expect = 0.48
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -1

Query: 188 VQKFGGGPGQK*NTEVDSTNLHQTIKNEFQMQKRPNHHKLLQFFL 54
           VQKFGGGP     T    TN  QT     Q  ++  HH  +Q+++
Sbjct: 128 VQKFGGGPAADRTTTKLLTNGDQTFSEILQAIEQAKHHIHIQYYI 172


>sp|Q81I00|CLS1_BACCR Cardiolipin synthetase 1 OS=Bacillus cereus
           (strain ATCC 14579 / DSM 31) GN=cls1 PE=3 SV=1
          Length = 509

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -1

Query: 188 VQKFGGGPGQK*NTEVDSTNLHQTIKNEFQMQKRPNHHKLLQFFL 54
           +QKFGGGP     T    TN  QT     +  ++  HH  +Q+++
Sbjct: 128 IQKFGGGPAADRTTTKLLTNGDQTFSEILRAIEQAKHHIHIQYYI 172


>sp|Q09GK0|CLECB_PHIOL C-type lectin subunit B OS=Philodryas
           olfersii PE=2 SV=1
          Length = 156

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 21/65 (32%), Positives = 28/65 (43%)
 Frame = +1

Query: 79  WFGLFCIWNSFFIVWWRLVLSTSVFYFCPGPPPNFWTCRLSPGMEDWALFFSYAIL*F*C 258
           W GL  IWN      W+    +S+ Y      P+    RL PG  DW      + L F C
Sbjct: 88  WIGLSNIWNQCS---WQWSDGSSLGYEAWVEGPDCVMMRLQPGFIDWYSVECKSTLPFTC 144

Query: 259 RFLCQ 273
           +FL +
Sbjct: 145 KFLAK 149
tr_hit_id A9SWY0
Definition tr|A9SWY0|A9SWY0_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 41
Score (bit) 62.4
E-value 1.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912255|Adiantum capillus-veneris mRNA, clone:
YMU001_000016_H08.
         (470 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SWY0|A9SWY0_PHYPA Predicted protein (Fragment) OS=Physcomit...    62   1e-08
tr|A7P349|A7P349_VITVI Chromosome chr1 scaffold_5, whole genome ...    54   3e-06
tr|B8LBV7|B8LBV7_THAPS Predicted protein (Fragment) OS=Thalassio...    54   4e-06
tr|Q9SX28|Q9SX28_ARATH F24J5.11 protein (At1g68650) (Putative tr...    53   9e-06
tr|B7FUM2|B7FUM2_PHATR Predicted protein (Fragment) OS=Phaeodact...    52   1e-05
tr|B6U9E5|B6U9E5_MAIZE Transmembrane protein PFT27 OS=Zea mays P...    52   2e-05
tr|B6TV17|B6TV17_MAIZE Transmembrane protein PFT27 OS=Zea mays P...    52   2e-05
tr|B6T2P1|B6T2P1_MAIZE Transmembrane protein PFT27 OS=Zea mays P...    52   2e-05
tr|Q9C6M1|Q9C6M1_ARATH Transmembrane protein, putative (Putative...    50   4e-05
tr|Q8LA33|Q8LA33_ARATH Transmembrane protein, putative OS=Arabid...    50   4e-05
tr|B8BB10|B8BB10_ORYSI Putative uncharacterized protein OS=Oryza...    50   6e-05
tr|A9NU88|A9NU88_PICSI Putative uncharacterized protein OS=Picea...    50   6e-05
tr|A8JFF7|A8JFF7_CHLRE Predicted protein OS=Chlamydomonas reinha...    48   2e-04
tr|A0BFK9|A0BFK9_PARTE Chromosome undetermined scaffold_104, who...    48   2e-04
tr|Q93Y38|Q93Y38_ARATH Transmembrane protein FT27/PFT27-like (At...    47   4e-04
tr|Q01AG3|Q01AG3_OSTTA Putative transmembrane protein (ISS) OS=O...    47   4e-04
tr|A0DAW7|A0DAW7_PARTE Chromosome undetermined scaffold_43, whol...    47   4e-04
tr|A0BST2|A0BST2_PARTE Chromosome undetermined scaffold_125, who...    47   4e-04
tr|A9NSR6|A9NSR6_PICSI Putative uncharacterized protein OS=Picea...    47   5e-04
tr|A2Q167|A2Q167_MEDTR Putative uncharacterized protein OS=Medic...    47   5e-04
tr|B4B020|B4B020_9CHRO Putative uncharacterized protein OS=Cyano...    45   0.001
tr|B4FUY3|B4FUY3_MAIZE Putative uncharacterized protein OS=Zea m...    45   0.001
tr|Q2R4J1|Q2R4J1_ORYSJ Os11g0472500 protein OS=Oryza sativa subs...    45   0.002
tr|A2ZE50|A2ZE50_ORYSI Putative uncharacterized protein OS=Oryza...    45   0.002
tr|A7PV91|A7PV91_VITVI Chromosome chr4 scaffold_32, whole genome...    45   0.002
tr|A5AW37|A5AW37_VITVI Putative uncharacterized protein OS=Vitis...    45   0.002
tr|A4RWI2|A4RWI2_OSTLU Predicted protein OS=Ostreococcus lucimar...    45   0.002
tr|Q6ZIB9|Q6ZIB9_ORYSJ Os08g0528500 protein OS=Oryza sativa subs...    44   0.004
tr|A3BV37|A3BV37_ORYSJ Putative uncharacterized protein OS=Oryza...    44   0.004
tr|A2YXC7|A2YXC7_ORYSI Putative uncharacterized protein OS=Oryza...    44   0.004

>tr|A9SWY0|A9SWY0_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_136505 PE=4 SV=1
          Length = 223

 Score = 62.4 bits (150), Expect = 1e-08
 Identities = 27/41 (65%), Positives = 34/41 (82%)
 Frame = +2

Query: 2   LCSTVAVCGGKHLASRISEKTVATCGGLVFFAFGIHSLLSG 124
           +C+  AV GGKHLASRISEKTVA CGG++F  FG H+L++G
Sbjct: 180 ICTGAAVIGGKHLASRISEKTVAICGGVLFLIFGAHALITG 220


>tr|A7P349|A7P349_VITVI Chromosome chr1 scaffold_5, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00030303001
           PE=4 SV=1
          Length = 216

 Score = 54.3 bits (129), Expect = 3e-06
 Identities = 27/40 (67%), Positives = 31/40 (77%)
 Frame = +2

Query: 2   LCSTVAVCGGKHLASRISEKTVATCGGLVFFAFGIHSLLS 121
           LC+T AV GGK LAS+ISEK VA  GG++F  FGI SLLS
Sbjct: 173 LCTTAAVLGGKSLASQISEKFVALSGGVLFIVFGIQSLLS 212


>tr|B8LBV7|B8LBV7_THAPS Predicted protein (Fragment)
           OS=Thalassiosira pseudonana CCMP1335 GN=THAPSDRAFT_36568
           PE=4 SV=1
          Length = 237

 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 25/38 (65%), Positives = 32/38 (84%)
 Frame = +2

Query: 2   LCSTVAVCGGKHLASRISEKTVATCGGLVFFAFGIHSL 115
           +C+ +AV GG+ LASRISEK+VA  GGLVF AFG+HS+
Sbjct: 196 ICTGMAVVGGRMLASRISEKSVAFYGGLVFLAFGVHSV 233


>tr|Q9SX28|Q9SX28_ARATH F24J5.11 protein (At1g68650) (Putative
           transmembrane protein) OS=Arabidopsis thaliana
           GN=At1g68650/F24J5_5 PE=2 SV=1
          Length = 228

 Score = 52.8 bits (125), Expect = 9e-06
 Identities = 26/43 (60%), Positives = 32/43 (74%)
 Frame = +2

Query: 2   LCSTVAVCGGKHLASRISEKTVATCGGLVFFAFGIHSLLSGGD 130
           LC+T AV GGK LAS+ISE+ VA  GG++F  FGI SLL+  D
Sbjct: 185 LCTTAAVLGGKSLASQISERIVALSGGMLFIIFGIQSLLTPVD 227


>tr|B7FUM2|B7FUM2_PHATR Predicted protein (Fragment)
           OS=Phaeodactylum tricornutum CCAP 1055/1
           GN=PHATRDRAFT_6052 PE=4 SV=1
          Length = 218

 Score = 52.4 bits (124), Expect = 1e-05
 Identities = 24/37 (64%), Positives = 30/37 (81%)
 Frame = +2

Query: 2   LCSTVAVCGGKHLASRISEKTVATCGGLVFFAFGIHS 112
           LC+ +AV GG+ LA+RISEKTV+  GGL+F  FGIHS
Sbjct: 182 LCTGLAVVGGRMLAARISEKTVSLLGGLIFLIFGIHS 218


>tr|B6U9E5|B6U9E5_MAIZE Transmembrane protein PFT27 OS=Zea mays PE=2
           SV=1
          Length = 232

 Score = 51.6 bits (122), Expect = 2e-05
 Identities = 26/41 (63%), Positives = 30/41 (73%)
 Frame = +2

Query: 2   LCSTVAVCGGKHLASRISEKTVATCGGLVFFAFGIHSLLSG 124
           LC+T AV GGK LAS+ISEK V    G++F  FGI SLLSG
Sbjct: 187 LCTTAAVLGGKSLASQISEKMVELSSGVLFLLFGIMSLLSG 227


>tr|B6TV17|B6TV17_MAIZE Transmembrane protein PFT27 OS=Zea mays PE=2
           SV=1
          Length = 234

 Score = 51.6 bits (122), Expect = 2e-05
 Identities = 26/41 (63%), Positives = 30/41 (73%)
 Frame = +2

Query: 2   LCSTVAVCGGKHLASRISEKTVATCGGLVFFAFGIHSLLSG 124
           LC+T AV GGK LAS+ISEK V    G++F  FGI SLLSG
Sbjct: 189 LCTTAAVLGGKSLASQISEKMVELSSGVLFLLFGIMSLLSG 229


>tr|B6T2P1|B6T2P1_MAIZE Transmembrane protein PFT27 OS=Zea mays PE=2
           SV=1
          Length = 208

 Score = 51.6 bits (122), Expect = 2e-05
 Identities = 26/41 (63%), Positives = 30/41 (73%)
 Frame = +2

Query: 2   LCSTVAVCGGKHLASRISEKTVATCGGLVFFAFGIHSLLSG 124
           LC+T AV GGK LAS+ISEK V    G++F  FGI SLLSG
Sbjct: 164 LCTTAAVLGGKSLASQISEKMVELSSGVLFLLFGIMSLLSG 204


>tr|Q9C6M1|Q9C6M1_ARATH Transmembrane protein, putative (Putative
           transmembrane protein) OS=Arabidopsis thaliana
           GN=At1g25520 PE=2 SV=1
          Length = 230

 Score = 50.4 bits (119), Expect = 4e-05
 Identities = 24/40 (60%), Positives = 30/40 (75%)
 Frame = +2

Query: 2   LCSTVAVCGGKHLASRISEKTVATCGGLVFFAFGIHSLLS 121
           LC+T AV GGK LAS+ISE+ VA  GG++F  FGI S L+
Sbjct: 187 LCTTAAVIGGKSLASQISERIVALSGGMLFIIFGIQSYLT 226


>tr|Q8LA33|Q8LA33_ARATH Transmembrane protein, putative
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 230

 Score = 50.4 bits (119), Expect = 4e-05
 Identities = 24/40 (60%), Positives = 30/40 (75%)
 Frame = +2

Query: 2   LCSTVAVCGGKHLASRISEKTVATCGGLVFFAFGIHSLLS 121
           LC+T AV GGK LAS+ISE+ VA  GG++F  FGI S L+
Sbjct: 187 LCTTAAVIGGKSLASQISERIVALSGGMLFIIFGIQSYLT 226