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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912258
Clone id YMU001_000016_H11
Library
Length 544
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000016_H11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TGGATCTAGGGATCGATTGTTTCTGCTGCTCTTTCTTGCAGGTCTTGCCTACTTGTATCA
AACAGGAGCACTCAGTCCTCTTCTGCGCTGGATTTCACAAAGTGCGCAGCGGGCAATGAT
GCCGCCTCAGCAACAGCAGCCTGCGCGAGCAGTGCCAGCAGAGAGAGGTCTTGGGCAAGG
TGGGATTGCGGCAGCAGATGTCCCTGGACAAGAAGGCGATGCAGTAGCTGCTGCGGACAA
CCATGCAGCTCCTCCTGTTGAAGGAGGTGGTCCTGCTAACATGGGGGGTGATCGTGTGCA
ACCACAGGCTCCGCCAGTTCAAGGGGCCACATGGTGGGGTATTCTCAAGGAGGAGCAAAT
GATAGTTGTAGGGTTTGTGACTTCGCTTCTTCCAGTGTTCCATCAGCATATGGATTGAAA
TTCTCAGAAGATTTATCAAACAAACGGGAGTGAAATCTTGAAAGGTGTATACCACTTGTA
TCTGTTAGCTCACAGAAAGCTAAAAAGGGGTGGGAAGCTTACTGTGCTGTTTGTTTTAAG
CACA
■■Homology search results ■■ -
sp_hit_id Q6P3Y5
Definition sp|Q6P3Y5|Z280C_MOUSE Zinc finger protein 280C OS=Mus musculus
Align length 53
Score (bit) 29.6
E-value 9.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912258|Adiantum capillus-veneris mRNA, clone:
YMU001_000016_H11.
         (544 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6P3Y5|Z280C_MOUSE Zinc finger protein 280C OS=Mus musculus G...    30   9.9  

>sp|Q6P3Y5|Z280C_MOUSE Zinc finger protein 280C OS=Mus musculus
           GN=Znf280c PE=2 SV=1
          Length = 742

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = -1

Query: 526 HSKLPTPF*LSVS*QIQVVYTFQDFTPVCLINLLRISI-HMLMEHWKKRSHKP 371
           + + P PF L     I+  +T  DF+ +C I  L     HML++H K  +HKP
Sbjct: 366 YRQYPNPFQLQC--HIESTHTPHDFSTICKICELSFETEHMLLQHMKD-THKP 415
tr_hit_id B8LLC4
Definition tr|B8LLC4|B8LLC4_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 120
Score (bit) 62.8
E-value 1.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912258|Adiantum capillus-veneris mRNA, clone:
YMU001_000016_H11.
         (544 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8LLC4|B8LLC4_PICSI Putative uncharacterized protein OS=Picea...    63   1e-08
tr|A9RRR2|A9RRR2_PHYPA Predicted protein OS=Physcomitrella paten...    59   2e-07
tr|A7QXM8|A7QXM8_VITVI Chromosome undetermined scaffold_226, who...    59   2e-07
tr|Q9SZR6|Q9SZR6_ARATH Putative uncharacterized protein F27B13.2...    55   2e-06
tr|A9TS21|A9TS21_PHYPA Predicted protein OS=Physcomitrella paten...    46   0.001
tr|Q7XS49|Q7XS49_ORYSJ Os04g0606800 protein OS=Oryza sativa subs...    41   0.036
tr|Q01KE1|Q01KE1_ORYSA OSIGBa0113I13.6 protein OS=Oryza sativa G...    41   0.036
tr|A2XXA1|A2XXA1_ORYSI Putative uncharacterized protein OS=Oryza...    41   0.036
tr|B6SLW7|B6SLW7_MAIZE Putative uncharacterized protein OS=Zea m...    38   0.40 
tr|B4FDL3|B4FDL3_MAIZE Putative uncharacterized protein OS=Zea m...    38   0.40 
tr|Q8DDZ6|Q8DDZ6_VIBVU Putative uncharacterized protein OS=Vibri...    33   9.9  

>tr|B8LLC4|B8LLC4_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 348

 Score = 62.8 bits (151), Expect = 1e-08
 Identities = 48/120 (40%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
 Frame = +2

Query: 59  QTGALSPLLRWISQSXXXXXXXXXXXXXXXXXXXERGLG-QGGIAAADVPGQEGXXXXXX 235
           QTGAL+PLL+W+S+S                    R  G Q G    +VP  E       
Sbjct: 237 QTGALAPLLQWLSRSAQRAGLPHQAPGRPVQPHVARPEGPQEGGNGPNVPNVERQDPQPA 296

Query: 236 XXXXXXXXEGGGPANMGGDRVQPQAPPVQGATWWGILKEEQMIVVGFVTSLLPVFHQHMD 415
                      GP    G  V  +A P QG  WWG +KE QMIVVGFVTSLLP FH H D
Sbjct: 297 AMEQVP----NGPDGAAG--VNERADP-QGLNWWGFVKEVQMIVVGFVTSLLPGFH-HAD 348


>tr|A9RRR2|A9RRR2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_160646 PE=4 SV=1
          Length = 409

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 44/142 (30%), Positives = 53/142 (37%), Gaps = 4/142 (2%)
 Frame = +2

Query: 2   GSRDRXXXXXXXXXXXXXXQTGALSPLLRWISQSXXXXXXXXXXXXXXXXXXXERGLGQG 181
           GS+DR              QTG L+PLLRW++                      + L QG
Sbjct: 280 GSKDRLLLLLGLAGVIYLYQTGLLAPLLRWLAVKAQQFMTPP------------QQLAQG 327

Query: 182 GIAAADVPGQEGXXXXXXXXXXXXXXEGGGPANMGGDRVQPQAPPVQGAT----WWGILK 349
                  PG +               E  G A      V  QAP          +W  +K
Sbjct: 328 QPDQQPAPGVQAMDAPAADAAVPGAEEPAGEAGAAPGGVNAQAPGGNAQNPQDPFWAFVK 387

Query: 350 EEQMIVVGFVTSLLPVFHQHMD 415
           E QM+VVGFVTSLLP FH H D
Sbjct: 388 ELQMLVVGFVTSLLPGFHPHAD 409


>tr|A7QXM8|A7QXM8_VITVI Chromosome undetermined scaffold_226, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00009261001 PE=4 SV=1
          Length = 214

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 45/135 (33%), Positives = 54/135 (40%), Gaps = 1/135 (0%)
 Frame = +2

Query: 2   GSRDRXXXXXXXXXXXXXXQTGALSPLLRWISQSXXXXXXXXXXXXXXXXXXX-ERGLGQ 178
           GSR R              QTGAL+P +RW+SQ                        + Q
Sbjct: 84  GSRQRLVILVFFASLIYLHQTGALTPFIRWLSQGMQRAAAPPQPPRPAVRAENVPAAVRQ 143

Query: 179 GGIAAADVPGQEGXXXXXXXXXXXXXXEGGGPANMGGDRVQPQAPPVQGATWWGILKEEQ 358
           G   AA   GQ G              E G  A +  + +        G  WWGI+KE Q
Sbjct: 144 GNENAAMAEGQAGAADQNQQA------EDGNEA-IENENIAEGGGGDGGNHWWGIVKEIQ 196

Query: 359 MIVVGFVTSLLPVFH 403
           MIVVGF+TSLLP FH
Sbjct: 197 MIVVGFITSLLPGFH 211


>tr|Q9SZR6|Q9SZR6_ARATH Putative uncharacterized protein F27B13.200
           (Putative uncharacterized protein At4g29960) (Putative
           uncharacterized protein) OS=Arabidopsis thaliana
           GN=F27B13.200 PE=2 SV=1
          Length = 291

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 42/134 (31%), Positives = 51/134 (38%)
 Frame = +2

Query: 2   GSRDRXXXXXXXXXXXXXXQTGALSPLLRWISQSXXXXXXXXXXXXXXXXXXXERGLGQG 181
           GSR R              QTGAL+P +RW+SQ                       +   
Sbjct: 166 GSRQRLAVLVIFATIIYLYQTGALAPFVRWLSQGMHRAAVPPARPHRP-------AVRAD 218

Query: 182 GIAAADVPGQEGXXXXXXXXXXXXXXEGGGPANMGGDRVQPQAPPVQGATWWGILKEEQM 361
              AA VP  E               + G  A    +  +      QG  WWGI+KE QM
Sbjct: 219 NDPAAAVPLNENAVLEGEENEA----DNGNRARANANENENVDAGNQGNQWWGIVKEIQM 274

Query: 362 IVVGFVTSLLPVFH 403
           IV GF+TSLLP FH
Sbjct: 275 IVFGFITSLLPGFH 288


>tr|A9TS21|A9TS21_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_96398 PE=4 SV=1
          Length = 346

 Score = 46.2 bits (108), Expect = 0.001
 Identities = 35/119 (29%), Positives = 48/119 (40%)
 Frame = +2

Query: 59  QTGALSPLLRWISQSXXXXXXXXXXXXXXXXXXXERGLGQGGIAAADVPGQEGXXXXXXX 238
           QTG L+PLL W SQ                       L   G+    + G +        
Sbjct: 250 QTGVLAPLLHWFSQYAHKAMMPPQPLINNIDGGHNVQLLAHGVGDGVIDGHD-------- 301

Query: 239 XXXXXXXEGGGPANMGGDRVQPQAPPVQGATWWGILKEEQMIVVGFVTSLLPVFHQHMD 415
                        +M  + V  Q   ++   WWG+LKE QM++VGF TSLLP + QH+D
Sbjct: 302 ------------PSMQHEDVNRQQN-LEDGNWWGLLKELQMLIVGFFTSLLPGY-QHVD 346


>tr|Q7XS49|Q7XS49_ORYSJ Os04g0606800 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0035M09.15 PE=2 SV=2
          Length = 278

 Score = 41.2 bits (95), Expect = 0.036
 Identities = 38/139 (27%), Positives = 48/139 (34%), Gaps = 1/139 (0%)
 Frame = +2

Query: 2   GSRDRXXXXXXXXXXXXXXQTGALSPLLRWISQSXXXXXXXXXXXXXXXXXXXERGLGQG 181
           GS+ R              QTGA++PLLRW+ ++                         G
Sbjct: 147 GSKQRLFLLILFASVIYLYQTGAITPLLRWLQRAGGAAARPPQAPARPENRAPLAAQNDG 206

Query: 182 GIAAADVPGQEGXXXXXXXXXXXXXXEGGGPANMGGDRVQPQAPPVQGATWWG-ILKEEQ 358
            +     PG                  G   AN     V  +        W G + KE Q
Sbjct: 207 NVQP---PGGNLADPANNDQAAENQEPGAAAANENQQEVDGEG---NRRNWLGGVFKEVQ 260

Query: 359 MIVVGFVTSLLPVFHQHMD 415
           +IVVGFV SLLP F QH D
Sbjct: 261 LIVVGFVASLLPGF-QHND 278


>tr|Q01KE1|Q01KE1_ORYSA OSIGBa0113I13.6 protein OS=Oryza sativa
           GN=OSIGBa0113I13.6 PE=4 SV=1
          Length = 278

 Score = 41.2 bits (95), Expect = 0.036
 Identities = 38/139 (27%), Positives = 48/139 (34%), Gaps = 1/139 (0%)
 Frame = +2

Query: 2   GSRDRXXXXXXXXXXXXXXQTGALSPLLRWISQSXXXXXXXXXXXXXXXXXXXERGLGQG 181
           GS+ R              QTGA++PLLRW+ ++                         G
Sbjct: 147 GSKQRLFLLILFASVIYLYQTGAITPLLRWLQRAGGAAARPPQAPARPENRAPLAAQNDG 206

Query: 182 GIAAADVPGQEGXXXXXXXXXXXXXXEGGGPANMGGDRVQPQAPPVQGATWWG-ILKEEQ 358
            +     PG                  G   AN     V  +        W G + KE Q
Sbjct: 207 NVQP---PGGNLADPANNDQAAENQEPGAAAANENQQEVDGEG---NRRNWLGGVFKEVQ 260

Query: 359 MIVVGFVTSLLPVFHQHMD 415
           +IVVGFV SLLP F QH D
Sbjct: 261 LIVVGFVASLLPGF-QHND 278


>tr|A2XXA1|A2XXA1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_17302 PE=4 SV=1
          Length = 278

 Score = 41.2 bits (95), Expect = 0.036
 Identities = 38/139 (27%), Positives = 48/139 (34%), Gaps = 1/139 (0%)
 Frame = +2

Query: 2   GSRDRXXXXXXXXXXXXXXQTGALSPLLRWISQSXXXXXXXXXXXXXXXXXXXERGLGQG 181
           GS+ R              QTGA++PLLRW+ ++                         G
Sbjct: 147 GSKQRLFLLILFASVIYLYQTGAITPLLRWLQRAGGAAARPPQAPARPENRAPLAAQNDG 206

Query: 182 GIAAADVPGQEGXXXXXXXXXXXXXXEGGGPANMGGDRVQPQAPPVQGATWWG-ILKEEQ 358
            +     PG                  G   AN     V  +        W G + KE Q
Sbjct: 207 NVQP---PGGNLADPANNDQAAENQEPGAAAANENQQEVDGEG---NRRNWLGGVFKEVQ 260

Query: 359 MIVVGFVTSLLPVFHQHMD 415
           +IVVGFV SLLP F QH D
Sbjct: 261 LIVVGFVASLLPGF-QHND 278


>tr|B6SLW7|B6SLW7_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 248

 Score = 37.7 bits (86), Expect = 0.40
 Identities = 23/41 (56%), Positives = 27/41 (65%), Gaps = 3/41 (7%)
 Frame = +2

Query: 302 PQAPPVQG--ATWWG-ILKEEQMIVVGFVTSLLPVFHQHMD 415
           PQ   V+G    W G +LKE Q++VVGFV SLLP F QH D
Sbjct: 209 PQEAEVEGNRRNWLGGVLKEVQLVVVGFVASLLPGF-QHND 248


>tr|B4FDL3|B4FDL3_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 248

 Score = 37.7 bits (86), Expect = 0.40
 Identities = 40/153 (26%), Positives = 52/153 (33%), Gaps = 15/153 (9%)
 Frame = +2

Query: 2   GSRDRXXXXXXXXXXXXXXQTGALSPLLRWISQSXXXXXXXXXXXXXXXXXXXERGLGQG 181
           GS+ R              QTGA+ P +RW+ ++                         G
Sbjct: 122 GSKQRLFLLILFASLIYLYQTGAIIPFVRWLQRA-------------------------G 156

Query: 182 GIAA------------ADVPGQEGXXXXXXXXXXXXXXEGGGPANMGGDRVQPQAPPVQG 325
           G AA            A +P Q                      +       PQ   V+G
Sbjct: 157 GAAAHPPQAPARAENRAALPAQNDGNEQPNDPANPDQAAENREQDAAAGNENPQEAEVEG 216

Query: 326 --ATWW-GILKEEQMIVVGFVTSLLPVFHQHMD 415
               W  G+LKE Q++VVGFV SLLP F QH D
Sbjct: 217 NRRNWLEGVLKEIQLVVVGFVASLLPGF-QHND 248