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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912260
Clone id YMU001_000017_A03
Library
Length 519
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000017_A03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TCCCCATGAGATTGTTGACACGCGCCCTTACAACCAAGCCCTTTCTGATTATATCATCAG
CAGTGGAAAGGGCAATACATCGATTACTAATCTGTAAGTTTTTAATTCTTTGAATTGAAT
GAGTAGAGCATCATGTTCCTTCCAACACTCTTGCTAGATGCTTGCAAGTAATGTAATGAG
GTCCTTGGAGAGTTTGTTGAGTGTTCATTCCAATAGTCTTGGATTGATAGCTATTTTGAT
TCATGAGTGAAATGTTTGTGAAGTATGCTGGTGAATGTAGGCTTTACGAAGGTGTGCAGT
TCTTGCACAAGTGTTTAGCTTCACATTTTAAAGAATAAGTTGTGCTTTGTAGGCCTCGCA
AGTGGAATGTGTGCGTGGTGGGCACTCATGACCTTTTTGAGCACCCTATGTACGCTTTAC
AAAGGTGTGCAGTTCTTGCACAAGTGTATAGCTTCACATTTTAAAGAATAAGTTGTGCTT
TGTAGGCCTCGCAAGTGGAATGTGTGCGTGGTGGGCACT
■■Homology search results ■■ -
sp_hit_id P17847
Definition sp|P17847|NIR_MAIZE Ferredoxin--nitrite reductase, chloroplastic (Fragment) OS=Zea mays
Align length 31
Score (bit) 46.2
E-value 9.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912260|Adiantum capillus-veneris mRNA, clone:
YMU001_000017_A03.
         (519 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P17847|NIR_MAIZE Ferredoxin--nitrite reductase, chloroplastic...    46   9e-05
sp|Q39161|NIR_ARATH Ferredoxin--nitrite reductase, chloroplastic...    46   1e-04
sp|P38500|NIR_BETVE Ferredoxin--nitrite reductase, chloroplastic...    45   2e-04
sp|P05314|NIR_SPIOL Ferredoxin--nitrite reductase, chloroplastic...    44   5e-04
sp|Q42997|NIR_ORYSJ Ferredoxin--nitrite reductase, chloroplastic...    44   5e-04
sp|P39661|NIR_SYNE7 Ferredoxin--nitrite reductase OS=Synechococc...    32   1.8  
sp|P63914|DEF_BRUSU Peptide deformylase OS=Brucella suis GN=def ...    30   8.8  
sp|P63913|DEF_BRUME Peptide deformylase OS=Brucella melitensis G...    30   8.8  

>sp|P17847|NIR_MAIZE Ferredoxin--nitrite reductase, chloroplastic
           (Fragment) OS=Zea mays GN=NIR PE=2 SV=1
          Length = 569

 Score = 46.2 bits (108), Expect = 9e-05
 Identities = 19/31 (61%), Positives = 24/31 (77%)
 Frame = +2

Query: 2   PHEIVDTRPYNQALSDYIISSGKGNTSITNL 94
           PHEIVDTRPY   LS Y+ ++ +GN +ITNL
Sbjct: 196 PHEIVDTRPYTNLLSSYVTNNSQGNPTITNL 226



 Score = 43.9 bits (102), Expect = 5e-04
 Identities = 15/18 (83%), Positives = 18/18 (100%)
 Frame = +3

Query: 354 PRKWNVCVVGTHDLFEHP 407
           PRKWNVCV+G+HDL+EHP
Sbjct: 227 PRKWNVCVIGSHDLYEHP 244


>sp|Q39161|NIR_ARATH Ferredoxin--nitrite reductase, chloroplastic
           OS=Arabidopsis thaliana GN=NIR1 PE=1 SV=1
          Length = 586

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 17/18 (94%), Positives = 18/18 (100%)
 Frame = +3

Query: 354 PRKWNVCVVGTHDLFEHP 407
           PRKWNVCVVGTHDL+EHP
Sbjct: 245 PRKWNVCVVGTHDLYEHP 262



 Score = 40.0 bits (92), Expect = 0.007
 Identities = 17/31 (54%), Positives = 21/31 (67%)
 Frame = +2

Query: 2   PHEIVDTRPYNQALSDYIISSGKGNTSITNL 94
           P EIVDTRPY   LS +I ++ +GN   TNL
Sbjct: 214 PEEIVDTRPYTNLLSQFITANSQGNPDFTNL 244



 Score = 30.0 bits (66), Expect = 6.9
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +1

Query: 487 PRKWNVCVVGT 519
           PRKWNVCVVGT
Sbjct: 245 PRKWNVCVVGT 255


>sp|P38500|NIR_BETVE Ferredoxin--nitrite reductase, chloroplastic
           OS=Betula verrucosa GN=NIR1 PE=2 SV=1
          Length = 583

 Score = 45.4 bits (106), Expect = 2e-04
 Identities = 17/18 (94%), Positives = 18/18 (100%)
 Frame = +3

Query: 354 PRKWNVCVVGTHDLFEHP 407
           PRKWNVCVVG+HDLFEHP
Sbjct: 242 PRKWNVCVVGSHDLFEHP 259



 Score = 40.4 bits (93), Expect = 0.005
 Identities = 17/30 (56%), Positives = 22/30 (73%)
 Frame = +2

Query: 5   HEIVDTRPYNQALSDYIISSGKGNTSITNL 94
           HEIV TRPYN  LS +I ++ +GN + TNL
Sbjct: 212 HEIVATRPYNNLLSQFITANSRGNLAFTNL 241


>sp|P05314|NIR_SPIOL Ferredoxin--nitrite reductase, chloroplastic
           OS=Spinacia oleracea GN=NIR PE=1 SV=1
          Length = 594

 Score = 43.9 bits (102), Expect = 5e-04
 Identities = 17/31 (54%), Positives = 24/31 (77%)
 Frame = +2

Query: 2   PHEIVDTRPYNQALSDYIISSGKGNTSITNL 94
           PHEIVDTRP+   +S ++ ++ +GN SITNL
Sbjct: 223 PHEIVDTRPFTNLISQFVTANSRGNLSITNL 253



 Score = 41.6 bits (96), Expect = 0.002
 Identities = 14/18 (77%), Positives = 17/18 (94%)
 Frame = +3

Query: 354 PRKWNVCVVGTHDLFEHP 407
           PRKWN CV+G+HDL+EHP
Sbjct: 254 PRKWNPCVIGSHDLYEHP 271


>sp|Q42997|NIR_ORYSJ Ferredoxin--nitrite reductase, chloroplastic
           OS=Oryza sativa subsp. japonica GN=Os01g0357100 PE=2
           SV=1
          Length = 596

 Score = 43.9 bits (102), Expect = 5e-04
 Identities = 15/18 (83%), Positives = 18/18 (100%)
 Frame = +3

Query: 354 PRKWNVCVVGTHDLFEHP 407
           PRKWNVCV+G+HDL+EHP
Sbjct: 256 PRKWNVCVIGSHDLYEHP 273



 Score = 40.0 bits (92), Expect = 0.007
 Identities = 19/31 (61%), Positives = 22/31 (70%)
 Frame = +2

Query: 2   PHEIVDTRPYNQALSDYIISSGKGNTSITNL 94
           P EIVDTR Y   LS YI S+ +GN +ITNL
Sbjct: 225 PDEIVDTRSYTNLLSSYITSNFQGNPTITNL 255


>sp|P39661|NIR_SYNE7 Ferredoxin--nitrite reductase OS=Synechococcus
           elongatus (strain PCC 7942) GN=nirA PE=3 SV=1
          Length = 512

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +2

Query: 8   EIVDTRPYNQALSDYIISSGKGNTSITNL 94
           E+ DTR   QAL D + ++G+GN+  TNL
Sbjct: 152 ELFDTRSLIQALQDDLTAAGQGNSEFTNL 180


>sp|P63914|DEF_BRUSU Peptide deformylase OS=Brucella suis GN=def
           PE=3 SV=1
          Length = 175

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = -2

Query: 296 HTFVKPTFTSILHKHFTHESK*LSIQDYWNEHSTNSPRT-SLHYLQASSK 150
           H FV PT      K  T+E   LSI DY+ E     P T  ++Y  A  K
Sbjct: 73  HIFVNPTIVQSSDKRSTYEEGCLSIPDYYAE--VERPATVKVNYFDADGK 120


>sp|P63913|DEF_BRUME Peptide deformylase OS=Brucella melitensis
           GN=def PE=3 SV=1
          Length = 175

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = -2

Query: 296 HTFVKPTFTSILHKHFTHESK*LSIQDYWNEHSTNSPRT-SLHYLQASSK 150
           H FV PT      K  T+E   LSI DY+ E     P T  ++Y  A  K
Sbjct: 73  HIFVNPTIVQSSDKRSTYEEGCLSIPDYYAE--VERPATVKVNYFDADGK 120
tr_hit_id A3Z3Q2
Definition tr|A3Z3Q2|A3Z3Q2_9SYNE Ferredoxin--nitrite reductase OS=Synechococcus sp. RS9917
Align length 31
Score (bit) 47.8
E-value 0.0003
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912260|Adiantum capillus-veneris mRNA, clone:
YMU001_000017_A03.
         (519 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A3Z3Q2|A3Z3Q2_9SYNE Ferredoxin--nitrite reductase OS=Synechoc...    48   3e-04
tr|Q8LSZ5|Q8LSZ5_PHYPA Ferredoxin-nitrite reductase (Nitrite red...    48   3e-04
tr|A9TB73|A9TB73_PHYPA Predicted protein OS=Physcomitrella paten...    48   3e-04
tr|Q4LEX0|Q4LEX0_PHYPA Ferredoxin-nitrite reductase (Nitrite red...    47   6e-04
tr|A9TEK7|A9TEK7_PHYPA Predicted protein OS=Physcomitrella paten...    47   6e-04
tr|B6SY01|B6SY01_MAIZE Ferredoxin--nitrite reductase OS=Zea mays...    46   0.001
tr|A7P9K2|A7P9K2_VITVI Chromosome chr3 scaffold_8, whole genome ...    46   0.001
tr|Q9FY16|Q9FY16_LOTJA Ferredoxin-nitrite reductase OS=Lotus jap...    45   0.002
tr|Q93XS0|Q93XS0_PRUPE Nitrite reductase (Fragment) OS=Prunus pe...    45   0.002
tr|Q41099|Q41099_PHAVU Nitrite reductase OS=Phaseolus vulgaris G...    45   0.002
tr|O04840|O04840_SOYBN Nitrite reductase OS=Glycine max PE=4 SV=1      45   0.002
tr|B8YNY7|B8YNY7_WHEAT Ferredoxin-nitrite reductase OS=Triticum ...    45   0.002
tr|B8YEL1|B8YEL1_WHEAT Ferredoxin-nitrite reductase OS=Triticum ...    45   0.002
tr|A7Y7M0|A7Y7M0_PRUDU Putative nitrite reductase (Fragment) OS=...    45   0.002
tr|Q76KA9|Q76KA9_TOBAC Nitrite reductase OS=Nicotiana tabacum GN...    45   0.002
tr|Q76G13|Q76G13_TOBAC Nitrite reductase OS=Nicotiana tabacum GN...    45   0.002
tr|Q42956|Q42956_TOBAC Ferredoxin--nitrite reductase (Fragment) ...    45   0.002
tr|A9PGV2|A9PGV2_POPTR Putative uncharacterized protein OS=Popul...    44   0.004
tr|A4S3H8|A4S3H8_OSTLU Predicted protein (Fragment) OS=Ostreococ...    44   0.004
tr|Q3LG52|Q3LG52_PHYAL Nitrite reductase (Fragment) OS=Physalis ...    44   0.005
tr|Q3LG50|Q3LG50_SOLLC Nitrite reductase (Fragment) OS=Solanum l...    44   0.005
tr|Q0JMV6|Q0JMV6_ORYSJ Os01g0357100 protein OS=Oryza sativa subs...    44   0.005
tr|Q0DXA2|Q0DXA2_ORYSJ Os02g0765900 protein OS=Oryza sativa subs...    44   0.005
tr|O65350|O65350_CAPAN Nitrite reductase OS=Capsicum annuum PE=2...    44   0.005
tr|B8A7W8|B8A7W8_ORYSI Putative uncharacterized protein OS=Oryza...    44   0.005
tr|A3ABP0|A3ABP0_ORYSJ Putative uncharacterized protein OS=Oryza...    44   0.005
tr|A2ZT06|A2ZT06_ORYSJ Putative uncharacterized protein OS=Oryza...    44   0.005
tr|Q010I2|Q010I2_OSTTA Nii, plastid-targeted nitrite reductase a...    43   0.011
tr|Q76KB0|Q76KB0_TOBAC Nitrite reductase OS=Nicotiana tabacum GN...    42   0.018
tr|Q42957|Q42957_TOBAC Ferredoxin--nitrite reductase (Fragment) ...    42   0.018

>tr|A3Z3Q2|A3Z3Q2_9SYNE Ferredoxin--nitrite reductase
           OS=Synechococcus sp. RS9917 GN=RS9917_06020 PE=4 SV=1
          Length = 513

 Score = 47.8 bits (112), Expect = 3e-04
 Identities = 19/31 (61%), Positives = 27/31 (87%)
 Frame = +2

Query: 2   PHEIVDTRPYNQALSDYIISSGKGNTSITNL 94
           PHEIVDTRPY QAL+D++ S+ +GN++ +NL
Sbjct: 155 PHEIVDTRPYTQALNDFLTSNAEGNSNYSNL 185


>tr|Q8LSZ5|Q8LSZ5_PHYPA Ferredoxin-nitrite reductase (Nitrite
           reductase) OS=Physcomitrella patens GN=Nii1 PE=2 SV=1
          Length = 602

 Score = 47.8 bits (112), Expect = 3e-04
 Identities = 23/31 (74%), Positives = 25/31 (80%)
 Frame = +2

Query: 2   PHEIVDTRPYNQALSDYIISSGKGNTSITNL 94
           P EIVDT P  QAL+DYII+ GKGNT ITNL
Sbjct: 238 PDEIVDTIPICQALNDYIINRGKGNTEITNL 268



 Score = 47.0 bits (110), Expect = 6e-04
 Identities = 18/18 (100%), Positives = 18/18 (100%)
 Frame = +3

Query: 354 PRKWNVCVVGTHDLFEHP 407
           PRKWNVCVVGTHDLFEHP
Sbjct: 269 PRKWNVCVVGTHDLFEHP 286


>tr|A9TB73|A9TB73_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_193361 PE=4 SV=1
          Length = 602

 Score = 47.8 bits (112), Expect = 3e-04
 Identities = 23/31 (74%), Positives = 25/31 (80%)
 Frame = +2

Query: 2   PHEIVDTRPYNQALSDYIISSGKGNTSITNL 94
           P EIVDT P  QAL+DYII+ GKGNT ITNL
Sbjct: 238 PDEIVDTIPICQALNDYIINRGKGNTEITNL 268



 Score = 47.0 bits (110), Expect = 6e-04
 Identities = 18/18 (100%), Positives = 18/18 (100%)
 Frame = +3

Query: 354 PRKWNVCVVGTHDLFEHP 407
           PRKWNVCVVGTHDLFEHP
Sbjct: 269 PRKWNVCVVGTHDLFEHP 286


>tr|Q4LEX0|Q4LEX0_PHYPA Ferredoxin-nitrite reductase (Nitrite
           reductase) OS=Physcomitrella patens GN=Nii1;2 PE=2 SV=1
          Length = 602

 Score = 47.0 bits (110), Expect = 6e-04
 Identities = 18/18 (100%), Positives = 18/18 (100%)
 Frame = +3

Query: 354 PRKWNVCVVGTHDLFEHP 407
           PRKWNVCVVGTHDLFEHP
Sbjct: 269 PRKWNVCVVGTHDLFEHP 286



 Score = 44.3 bits (103), Expect = 0.004
 Identities = 20/31 (64%), Positives = 24/31 (77%)
 Frame = +2

Query: 2   PHEIVDTRPYNQALSDYIISSGKGNTSITNL 94
           P EIVDT P+ + LSDYII+ G+GN  ITNL
Sbjct: 238 PDEIVDTAPFCKVLSDYIINRGQGNPQITNL 268


>tr|A9TEK7|A9TEK7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_144369 PE=4 SV=1
          Length = 602

 Score = 47.0 bits (110), Expect = 6e-04
 Identities = 18/18 (100%), Positives = 18/18 (100%)
 Frame = +3

Query: 354 PRKWNVCVVGTHDLFEHP 407
           PRKWNVCVVGTHDLFEHP
Sbjct: 269 PRKWNVCVVGTHDLFEHP 286



 Score = 44.3 bits (103), Expect = 0.004
 Identities = 20/31 (64%), Positives = 24/31 (77%)
 Frame = +2

Query: 2   PHEIVDTRPYNQALSDYIISSGKGNTSITNL 94
           P EIVDT P+ + LSDYII+ G+GN  ITNL
Sbjct: 238 PDEIVDTAPFCKVLSDYIINRGQGNPQITNL 268


>tr|B6SY01|B6SY01_MAIZE Ferredoxin--nitrite reductase OS=Zea mays
           PE=2 SV=1
          Length = 597

 Score = 46.2 bits (108), Expect = 0.001
 Identities = 19/31 (61%), Positives = 24/31 (77%)
 Frame = +2

Query: 2   PHEIVDTRPYNQALSDYIISSGKGNTSITNL 94
           PHEIVDTRPY   LS Y+ ++ +GN +ITNL
Sbjct: 224 PHEIVDTRPYTNLLSSYVTNNSQGNPTITNL 254



 Score = 43.9 bits (102), Expect = 0.005
 Identities = 15/18 (83%), Positives = 18/18 (100%)
 Frame = +3

Query: 354 PRKWNVCVVGTHDLFEHP 407
           PRKWNVCV+G+HDL+EHP
Sbjct: 255 PRKWNVCVIGSHDLYEHP 272


>tr|A7P9K2|A7P9K2_VITVI Chromosome chr3 scaffold_8, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00036600001
           PE=4 SV=1
          Length = 595

 Score = 46.2 bits (108), Expect = 0.001
 Identities = 19/31 (61%), Positives = 24/31 (77%)
 Frame = +2

Query: 2   PHEIVDTRPYNQALSDYIISSGKGNTSITNL 94
           PHEIVDTRPY   LS +I ++ +GNT+ TNL
Sbjct: 222 PHEIVDTRPYTNLLSQFITANARGNTAFTNL 252



 Score = 44.3 bits (103), Expect = 0.004
 Identities = 16/18 (88%), Positives = 18/18 (100%)
 Frame = +3

Query: 354 PRKWNVCVVGTHDLFEHP 407
           PRKWNVCVVG+HDL+EHP
Sbjct: 253 PRKWNVCVVGSHDLYEHP 270


>tr|Q9FY16|Q9FY16_LOTJA Ferredoxin-nitrite reductase OS=Lotus
           japonicus GN=nir PE=2 SV=1
          Length = 582

 Score = 45.4 bits (106), Expect = 0.002
 Identities = 17/18 (94%), Positives = 18/18 (100%)
 Frame = +3

Query: 354 PRKWNVCVVGTHDLFEHP 407
           PRKWNVCVVG+HDLFEHP
Sbjct: 240 PRKWNVCVVGSHDLFEHP 257



 Score = 39.7 bits (91), Expect = 0.091
 Identities = 16/31 (51%), Positives = 23/31 (74%)
 Frame = +2

Query: 2   PHEIVDTRPYNQALSDYIISSGKGNTSITNL 94
           P EIVDTRPY   LS +I ++ +GN +++NL
Sbjct: 209 PDEIVDTRPYTNLLSHFITANSRGNPTVSNL 239


>tr|Q93XS0|Q93XS0_PRUPE Nitrite reductase (Fragment) OS=Prunus
           persica GN=PpNiR1 PE=2 SV=1
          Length = 532

 Score = 45.4 bits (106), Expect = 0.002
 Identities = 17/18 (94%), Positives = 18/18 (100%)
 Frame = +3

Query: 354 PRKWNVCVVGTHDLFEHP 407
           PRKWNVCVVG+HDLFEHP
Sbjct: 191 PRKWNVCVVGSHDLFEHP 208



 Score = 42.0 bits (97), Expect = 0.018
 Identities = 18/31 (58%), Positives = 22/31 (70%)
 Frame = +2

Query: 2   PHEIVDTRPYNQALSDYIISSGKGNTSITNL 94
           P EIVDTRPY   LS YI ++  GN ++TNL
Sbjct: 160 PEEIVDTRPYTNLLSQYITANSLGNPTVTNL 190


>tr|Q41099|Q41099_PHAVU Nitrite reductase OS=Phaseolus vulgaris
           GN=NIR PE=4 SV=1
          Length = 582

 Score = 45.4 bits (106), Expect = 0.002
 Identities = 17/18 (94%), Positives = 18/18 (100%)
 Frame = +3

Query: 354 PRKWNVCVVGTHDLFEHP 407
           PRKWNVCVVG+HDLFEHP
Sbjct: 241 PRKWNVCVVGSHDLFEHP 258



 Score = 40.0 bits (92), Expect = 0.070
 Identities = 17/31 (54%), Positives = 23/31 (74%)
 Frame = +2

Query: 2   PHEIVDTRPYNQALSDYIISSGKGNTSITNL 94
           P EIVDTRPYN  LS +I ++  GN +++NL
Sbjct: 210 PDEIVDTRPYNNLLSQFITANSLGNPAMSNL 240