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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912263
Clone id YMU001_000017_A06
Library
Length 502
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000017_A06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GAGACGCGTCTCGAGCAGCAATGTCTCTCTGCCTACAAATTACATAAAAAATGACACTTG
TCTGCTGCCTTTCCGTCGCCCCCATCCCTCTGCCCTCTTCCGCAAACCTTGCTTGCTTCT
CATACTTCTGAGTGACCTTCTTCGTCGTCGAGTAAGTGTAGCTTTCTTGTCTGCTTTGCT
GATATGTTAGGGTTAAAGTTGTAGGCTATGGACCCTCAAATACATTACCCTTCTTTAAAT
GCCCCGGCCGAAACGCCTCTCTCTTCTGATCAGCAGTCGCGCCTGCGCTACCCAGACCCC
GTCTCCATAGATGCCATCACTGCAGATCTTTCCAAGAAGATCGAGGTCTCCCCTGTTGAG
GCATCCGAGACTCTGTTAGTCTCTGTGCCTGACGCCGTCGCTCACCTTGTCGATCGCGAG
GCTAGCCCTCACCTTGCAAGTGGCCCCTTCTCTATTGTTCGTCTTAACCAGGATGGCAAC
GGCATTGCTGTCTTTGCACGTG
■■Homology search results ■■ -
sp_hit_id Q6BXQ6
Definition sp|Q6BXQ6|UTP10_DEBHA U3 small nucleolar RNA-associated protein 10 OS=Debaryomyces hansenii
Align length 74
Score (bit) 32.3
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912263|Adiantum capillus-veneris mRNA, clone:
YMU001_000017_A06.
         (502 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6BXQ6|UTP10_DEBHA U3 small nucleolar RNA-associated protein ...    32   1.3  
sp|Q6BXI1|SEC16_DEBHA COPII coat assembly protein SEC16 OS=Debar...    32   2.2  
sp|Q2R0Q1|U2A2A_ORYSJ Splicing factor U2af large subunit A OS=Or...    30   4.9  
sp|Q5ZQU2|NPAS2_CHICK Neuronal PAS domain-containing protein 2 O...    30   6.4  

>sp|Q6BXQ6|UTP10_DEBHA U3 small nucleolar RNA-associated protein 10
            OS=Debaryomyces hansenii GN=UTP10 PE=3 SV=2
          Length = 1857

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 22/74 (29%), Positives = 38/74 (51%)
 Frame = +1

Query: 166  LVCFADMLGLKL*AMDPQIHYPSLNAPAETPLSSDQQSRLRYPDPVSIDAITADLSKKIE 345
            +    ++LG+K   + P+I  PSLN    T  S D+ S+L      SI  + A L KKI 
Sbjct: 1436 ITSIVNVLGVKAIGLFPKIVPPSLNIWKTTTASEDESSKLL---QASIILLLACLIKKIP 1492

Query: 346  VSPVEASETLLVSV 387
            V    + +++ +++
Sbjct: 1493 VFMTTSLDSIFITI 1506


>sp|Q6BXI1|SEC16_DEBHA COPII coat assembly protein SEC16
           OS=Debaryomyces hansenii GN=SEC16 PE=3 SV=2
          Length = 2130

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = +1

Query: 205 AMDPQIHYPSLNAPAETPLSSDQQSRLRYPDPVSIDAITADLSKK 339
           +M P++H PS+NA    P+ +++Q+ +    P+S    T  L KK
Sbjct: 620 SMPPKLHSPSMNAVGSVPVPNEKQATM--SQPLSAAVSTQGLQKK 662


>sp|Q2R0Q1|U2A2A_ORYSJ Splicing factor U2af large subunit A OS=Oryza
           sativa subsp. japonica GN=U2AF65A PE=2 SV=2
          Length = 574

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = -1

Query: 463 DEQ*RRGHLQGEG*PRDRQGERRRQAQRLTESRMPQQGRPRSS 335
           D   RRGH       RDR G RR +++    SR P +GR R S
Sbjct: 124 DRDRRRGHDSERRRDRDRDGHRRHRSR----SRSPSKGRDRRS 162


>sp|Q5ZQU2|NPAS2_CHICK Neuronal PAS domain-containing protein 2
           OS=Gallus gallus GN=NPAS2 PE=2 SV=1
          Length = 815

 Score = 30.0 bits (66), Expect = 6.4
 Identities = 18/37 (48%), Positives = 22/37 (59%)
 Frame = +1

Query: 4   TRLEQQCLSAYKLHKK*HLSAAFPSPPSLCPLPQTLL 114
           T   QQ LSA++L +   L A+ PS PS   LPQ LL
Sbjct: 443 TSSTQQDLSAHRLSQPTALQASLPSQPSCELLPQQLL 479
tr_hit_id A9TKT2
Definition tr|A9TKT2|A9TKT2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 55
Score (bit) 63.2
E-value 7.0e-09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912263|Adiantum capillus-veneris mRNA, clone:
YMU001_000017_A06.
         (502 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TKT2|A9TKT2_PHYPA Predicted protein OS=Physcomitrella paten...    63   7e-09
tr|A9U3E2|A9U3E2_PHYPA Predicted protein OS=Physcomitrella paten...    60   8e-08
tr|A9RD05|A9RD05_PHYPA Predicted protein (Fragment) OS=Physcomit...    54   3e-06
tr|B5TV63|B5TV63_CAMSI Senescence-related protein OS=Camellia si...    54   4e-06
tr|A9U2N3|A9U2N3_PHYPA Predicted protein OS=Physcomitrella paten...    54   4e-06
tr|A9RAW2|A9RAW2_PHYPA Predicted protein (Fragment) OS=Physcomit...    52   2e-05
tr|A9RSE9|A9RSE9_PHYPA Predicted protein (Fragment) OS=Physcomit...    49   1e-04
tr|A7QDV5|A7QDV5_VITVI Chromosome chr4 scaffold_83, whole genome...    49   1e-04
tr|Q9SD22|Q9SD22_ARATH Putative uncharacterized protein F24M12.2...    45   0.001
tr|O65635|O65635_ARATH Putative uncharacterized protein T19K4.11...    45   0.001
tr|A7P8A4|A7P8A4_VITVI Chromosome chr3 scaffold_8, whole genome ...    45   0.002
tr|Q10P99|Q10P99_ORYSJ Os03g0241900 protein OS=Oryza sativa subs...    45   0.003
tr|A2XEE9|A2XEE9_ORYSI Putative uncharacterized protein OS=Oryza...    45   0.003
tr|B4F8T3|B4F8T3_MAIZE Putative uncharacterized protein OS=Zea m...    44   0.006
tr|Q94II1|Q94II1_ARATH ERD7 protein (Fragment) OS=Arabidopsis th...    40   0.081
tr|Q8LA30|Q8LA30_ARATH Putative senescence-associated protein 12...    40   0.081
tr|O48832|O48832_ARATH Putative senescence-related protein (Prob...    40   0.081
tr|A4HUE2|A4HUE2_LEIIN Putative uncharacterized protein OS=Leish...    39   0.14 
tr|A9SZ04|A9SZ04_PHYPA Predicted protein OS=Physcomitrella paten...    38   0.24 
tr|B6MFS1|B6MFS1_BRAFL Putative uncharacterized protein OS=Branc...    37   0.40 
tr|A9RJ80|A9RJ80_PHYPA Predicted protein OS=Physcomitrella paten...    37   0.53 
tr|A4H615|A4H615_LEIBR Putative uncharacterized protein OS=Leish...    36   1.2  
tr|Q5JM97|Q5JM97_ORYSJ cDNA clone:001-022-B06, full insert seque...    35   1.5  
tr|B8A8R5|B8A8R5_ORYSI Putative uncharacterized protein OS=Oryza...    35   1.5  
tr|A2ZXD7|A2ZXD7_ORYSJ Putative uncharacterized protein OS=Oryza...    35   1.5  
tr|B8LK66|B8LK66_PICSI Putative uncharacterized protein OS=Picea...    35   2.0  
tr|Q5GYY4|Q5GYY4_XANOR Chemotaxis protein OS=Xanthomonas oryzae ...    35   2.6  
tr|Q2IEK2|Q2IEK2_ANADE Putative uncharacterized protein OS=Anaer...    35   2.6  
tr|B2SVD7|B2SVD7_XANOP Chemotaxis protein OS=Xanthomonas oryzae ...    35   2.6  
tr|Q9LVE6|Q9LVE6_ARATH Similarity to senescence-associated prote...    33   5.8  

>tr|A9TKT2|A9TKT2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_196034 PE=4 SV=1
          Length = 408

 Score = 63.2 bits (152), Expect = 7e-09
 Identities = 29/55 (52%), Positives = 39/55 (70%)
 Frame = +1

Query: 337 KIEVSPVEASETLLVSVPDAVAHLVDREASPHLASGPFSIVRLNQDGNGIAVFAR 501
           K + +P++  E  LV+VPDA+ HLVD + SPHLA+  FS+VR+ Q GNGI V  R
Sbjct: 9   KDDDTPLDPREECLVTVPDAIVHLVDDQQSPHLATAHFSVVRITQKGNGIVVLVR 63


>tr|A9U3E2|A9U3E2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_200827 PE=4 SV=1
          Length = 430

 Score = 59.7 bits (143), Expect = 8e-08
 Identities = 41/95 (43%), Positives = 51/95 (53%), Gaps = 5/95 (5%)
 Frame = +1

Query: 232 SLNAPAETPLSSDQQSRLRYPDPVS-----IDAITADLSKKIEVSPVEASETLLVSVPDA 396
           SL    ++P  S+  S L YP   S       A  AD++     SPV A E LLV++P A
Sbjct: 15  SLKIRPQSPFPSNASSSL-YPKIQSEGRPPAAAAAADMASGSANSPVGAFEELLVTIPGA 73

Query: 397 VAHLVDREASPHLASGPFSIVRLNQDGNGIAVFAR 501
           + HLVD + S  LASG FSIVR+NQ    I V  R
Sbjct: 74  LVHLVDDQESVLLASGDFSIVRINQQNQRIVVLVR 108


>tr|A9RD05|A9RD05_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_23114 PE=4 SV=1
          Length = 365

 Score = 54.3 bits (129), Expect = 3e-06
 Identities = 27/48 (56%), Positives = 32/48 (66%)
 Frame = +1

Query: 358 EASETLLVSVPDAVAHLVDREASPHLASGPFSIVRLNQDGNGIAVFAR 501
           E SE +LV V  AV HLVD E SP LA G FS+V + Q+GNGI  F +
Sbjct: 1   ETSEEVLVRVRGAVVHLVDDEESPLLAEGSFSVVLIEQEGNGIVAFVK 48


>tr|B5TV63|B5TV63_CAMSI Senescence-related protein OS=Camellia
           sinensis PE=2 SV=1
          Length = 448

 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 26/51 (50%), Positives = 35/51 (68%)
 Frame = +1

Query: 349 SPVEASETLLVSVPDAVAHLVDREASPHLASGPFSIVRLNQDGNGIAVFAR 501
           S +E+SE +L+ VP  + HL+D+E S  LA G  +IVRL Q GN +AV AR
Sbjct: 60  SQLESSEEILIRVPGTIVHLIDKEQSVELACGELTIVRLLQGGNVVAVLAR 110


>tr|A9U2N3|A9U2N3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_100871 PE=4 SV=1
          Length = 287

 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 25/50 (50%), Positives = 31/50 (62%)
 Frame = +1

Query: 352 PVEASETLLVSVPDAVAHLVDREASPHLASGPFSIVRLNQDGNGIAVFAR 501
           P+   E  L S P A+ HLVD + +P LA+ PFSIVR+ Q GNG  V  R
Sbjct: 47  PLNPREECLFSTPAAIVHLVDEQQNPRLATDPFSIVRITQKGNGSVVIVR 96


>tr|A9RAW2|A9RAW2_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_23136 PE=4 SV=1
          Length = 366

 Score = 52.0 bits (123), Expect = 2e-05
 Identities = 26/48 (54%), Positives = 31/48 (64%)
 Frame = +1

Query: 358 EASETLLVSVPDAVAHLVDREASPHLASGPFSIVRLNQDGNGIAVFAR 501
           EASE +LV +  AV HLVD + SP L  G FSIV + Q GNG+  F R
Sbjct: 1   EASEEVLVRIRGAVVHLVDDQKSPLLGDGDFSIVLIEQAGNGLVTFVR 48


>tr|A9RSE9|A9RSE9_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_22416 PE=4 SV=1
          Length = 371

 Score = 48.9 bits (115), Expect = 1e-04
 Identities = 24/50 (48%), Positives = 30/50 (60%)
 Frame = +1

Query: 352 PVEASETLLVSVPDAVAHLVDREASPHLASGPFSIVRLNQDGNGIAVFAR 501
           P+   E  L S P A+ +LVD + SPHLA+  FSIVR+ Q GN   V  R
Sbjct: 7   PLNPREECLFSTPVAIVYLVDEQQSPHLATDYFSIVRITQKGNDSVVIVR 56


>tr|A7QDV5|A7QDV5_VITVI Chromosome chr4 scaffold_83, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00036757001
           PE=4 SV=1
          Length = 395

 Score = 48.9 bits (115), Expect = 1e-04
 Identities = 24/51 (47%), Positives = 34/51 (66%)
 Frame = +1

Query: 349 SPVEASETLLVSVPDAVAHLVDREASPHLASGPFSIVRLNQDGNGIAVFAR 501
           +P E+ E +LV +P  + HL+D++ S  LASG  SI+RL Q  N +AV AR
Sbjct: 59  APPESLEEVLVMLPGVILHLIDKQYSVELASGDLSIIRLWQGNNIVAVLAR 109


>tr|Q9SD22|Q9SD22_ARATH Putative uncharacterized protein F24M12.290
           (AT3g51250/F24M12_290) OS=Arabidopsis thaliana
           GN=F24M12.290 PE=2 SV=1
          Length = 463

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 22/50 (44%), Positives = 34/50 (68%)
 Frame = +1

Query: 349 SPVEASETLLVSVPDAVAHLVDREASPHLASGPFSIVRLNQDGNGIAVFA 498
           +P +A+E +L+ VP A+ +L+D+  S  LA G F+IVR+ Q  N +AV A
Sbjct: 69  APPQATEEVLIRVPGAILNLIDKSYSVELACGDFTIVRIIQGQNIVAVLA 118


>tr|O65635|O65635_ARATH Putative uncharacterized protein T19K4.110
           (Putative uncharacterized protein AT4g35980)
           OS=Arabidopsis thaliana GN=T19K4.110 PE=2 SV=1
          Length = 512

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 30/92 (32%), Positives = 49/92 (53%)
 Frame = +1

Query: 226 YPSLNAPAETPLSSDQQSRLRYPDPVSIDAITADLSKKIEVSPVEASETLLVSVPDAVAH 405
           YPS+N        +D  + + +PDP + D+ +A         P  A+E +++++  A+ H
Sbjct: 39  YPSINV-------NDLVNNI-FPDPTASDSASA---------PPLATEEVILTIHGAMVH 81

Query: 406 LVDREASPHLASGPFSIVRLNQDGNGIAVFAR 501
           L+D+  S  LA G   I+RL Q    +AVFAR
Sbjct: 82  LIDKSYSVELACGDLEILRLVQGDITVAVFAR 113