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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912272
Clone id YMU001_000017_B04
Library
Length 556
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000017_B04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AGAGGCTCTTCACTGCTACATTAATATTGATATATATGCATCATAAGTACTCCTAAAATG
TCATCTCCCCTTGCTGTAAAGAAGGCTCCTTCAGCATGATGCTACTCCAATAATCAGAGA
TGTCATCATTGAGCAATGTAGAGAAGCTTGTGAGATGGCTTGTTGTCGACGCCTCGCTCT
TCAGCTTGGGCAAGTCTTTGAACATCTCTGCGCTCATTAATTCCCCGCCAGCACTCATAC
TTCTTCCCTCGTTACCATCCGCCAGAGCATCATGACTTCGAATGTTGTCGTTCTAGATCT
CTTTGCAGTCGTTGATTCCATCTTTCATGTTCACTTGTTTATCTTCTATGTCCATGGTAG
AAGACAAGAGTACATCGGAGAGATTTTCATCAGCTTTTCCCTCAATAGGGCCTATGCACT
ATCCGACGATATCCTTGGCACTTTCATCTTCATAAATGACGCACAATTCTCCTTCCTCCA
CAGTATTGGAATCTTCTACCATGAAAGGTAGCTGATCACATGCAGCTTCCTGGATCTCTT
TGCACGAGGCATCATC
■■Homology search results ■■ -
sp_hit_id Q7TUA9
Definition sp|Q7TUA9|EFTS_PROMP Elongation factor Ts OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1378 / MED4)
Align length 118
Score (bit) 34.3
E-value 0.42
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912272|Adiantum capillus-veneris mRNA, clone:
YMU001_000017_B04.
         (556 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7TUA9|EFTS_PROMP Elongation factor Ts OS=Prochlorococcus mar...    34   0.42 
sp|A2BQP0|EFTS_PROMS Elongation factor Ts OS=Prochlorococcus mar...    33   0.94 
sp|Q31BC3|EFTS_PROM9 Elongation factor Ts OS=Prochlorococcus mar...    33   1.2  
sp|A2BW76|EFTS_PROM5 Elongation factor Ts OS=Prochlorococcus mar...    32   2.7  
sp|A3PCG2|EFTS_PROM0 Elongation factor Ts OS=Prochlorococcus mar...    32   2.7  
sp|Q17389|CUL1_CAEEL Cullin-1 OS=Caenorhabditis elegans GN=cul-1...    31   3.6  
sp|Q89WI2|SYFB_BRAJA Phenylalanyl-tRNA synthetase beta chain OS=...    30   8.0  
sp|A8G4D2|EFTS_PROM2 Elongation factor Ts OS=Prochlorococcus mar...    30   8.0  

>sp|Q7TUA9|EFTS_PROMP Elongation factor Ts OS=Prochlorococcus
           marinus subsp. pastoris (strain CCMP1378 / MED4) GN=tsf
           PE=3 SV=1
          Length = 218

 Score = 34.3 bits (77), Expect = 0.42
 Identities = 27/118 (22%), Positives = 56/118 (47%), Gaps = 5/118 (4%)
 Frame = -1

Query: 550 ASCKEIQEAACDQLPF-MVEDSNTVEEGELCVIYEDESAKDIVG*CIGPIEGKADENLSD 374
           A+C  ++  + DQ+P  +VE    +E G   +  + E+ K+ +      +EG+  + L++
Sbjct: 103 AACPNVEYVSIDQIPKDIVEKEKQIEMGRDDLSGKPENIKEKI------VEGRIAKRLNE 156

Query: 373 VLLSSTMDIEDKQVNMKDGINDCKEI*NDNIR----SHDALADGNEGRSMSAGGELMS 212
           ++L S   I+D  + ++D +        +NI+    +   L +G E   M    E+ S
Sbjct: 157 LVLLSQPYIKDSALTVEDLVKQAAAKIGENIKVRRFTRYTLGEGIEKNEMDFADEVAS 214


>sp|A2BQP0|EFTS_PROMS Elongation factor Ts OS=Prochlorococcus
           marinus (strain AS9601) GN=tsf PE=3 SV=1
          Length = 218

 Score = 33.1 bits (74), Expect = 0.94
 Identities = 26/120 (21%), Positives = 56/120 (46%), Gaps = 5/120 (4%)
 Frame = -1

Query: 550 ASCKEIQEAACDQLPF-MVEDSNTVEEGELCVIYEDESAKDIVG*CIGPIEGKADENLSD 374
           A+C  ++  + D++P  +VE    +E G   +  + E  K+ +      +EG+  + L++
Sbjct: 103 AACPNVEYVSIDEIPEDVVEKEKQIEMGRDDLSGKPEQIKEKI------VEGRIAKRLNE 156

Query: 373 VLLSSTMDIEDKQVNMKDGINDCKEI*NDNIR----SHDALADGNEGRSMSAGGELMSAE 206
           ++L S   I+D  + ++D +        +NI+    +   L +G E   M    E+ S +
Sbjct: 157 LVLLSQPYIKDSSLTVEDLVKQAAAKIGENIKVRRFTRYTLGEGIEKNQMDFAEEVASMQ 216


>sp|Q31BC3|EFTS_PROM9 Elongation factor Ts OS=Prochlorococcus
           marinus (strain MIT 9312) GN=tsf PE=3 SV=1
          Length = 218

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 26/118 (22%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
 Frame = -1

Query: 550 ASCKEIQEAACDQLPF-MVEDSNTVEEGELCVIYEDESAKDIVG*CIGPIEGKADENLSD 374
           A+C  ++  + D++P  +VE    +E G   +  + E  K+ +      +EG+  + L++
Sbjct: 103 AACPNVEYVSIDEIPEDVVEKEKQIEMGRDDLSGKPEQIKEKI------VEGRIAKRLNE 156

Query: 373 VLLSSTMDIEDKQVNMKDGINDCKEI*NDNIR----SHDALADGNEGRSMSAGGELMS 212
           ++L S   I+D  + ++D +        +NI+    +   L +G E   M    E+ S
Sbjct: 157 LVLLSQPYIKDSSLTVEDLVKQAAAKIGENIKVRRFTRYTLGEGIEKNQMDFAEEVAS 214


>sp|A2BW76|EFTS_PROM5 Elongation factor Ts OS=Prochlorococcus
           marinus (strain MIT 9515) GN=tsf PE=3 SV=1
          Length = 218

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 25/118 (21%), Positives = 56/118 (47%), Gaps = 5/118 (4%)
 Frame = -1

Query: 550 ASCKEIQEAACDQLPF-MVEDSNTVEEGELCVIYEDESAKDIVG*CIGPIEGKADENLSD 374
           A+C  ++  + D++P  +V+    +E G   +  + E+ K+ +      +EG+  + L++
Sbjct: 103 AACPNVEYVSIDEIPEDVVKKEKGIEMGRDDLSGKPENIKEKI------VEGRIAKRLNE 156

Query: 373 VLLSSTMDIEDKQVNMKDGINDCKEI*NDNIR----SHDALADGNEGRSMSAGGELMS 212
           ++L S   I+D  + ++D +        +NI+    +   L +G E   M    E+ S
Sbjct: 157 LVLLSQPYIKDSSLTVEDLVKQAAAKIGENIKVRRFTRYTLGEGIEKNEMDFADEVAS 214


>sp|A3PCG2|EFTS_PROM0 Elongation factor Ts OS=Prochlorococcus
           marinus (strain MIT 9301) GN=tsf PE=3 SV=1
          Length = 218

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 25/120 (20%), Positives = 56/120 (46%), Gaps = 5/120 (4%)
 Frame = -1

Query: 550 ASCKEIQEAACDQLPF-MVEDSNTVEEGELCVIYEDESAKDIVG*CIGPIEGKADENLSD 374
           A+C  ++  + D++P  +VE    +E G   +  + E  K+ +      +EG+  + L++
Sbjct: 103 AACPNVEYVSIDEIPEEVVEKEKQIEMGRDDLSGKPEQIKEKI------VEGRIAKRLNE 156

Query: 373 VLLSSTMDIEDKQVNMKDGINDCKEI*NDNIR----SHDALADGNEGRSMSAGGELMSAE 206
           ++L S   I+D  + ++D +        +NI+    +   L +G E   +    E+ S +
Sbjct: 157 LVLLSQPYIKDSSLTVEDLVKQAAAKIGENIKVRRFTRYTLGEGIEKNQIDFAEEVASMQ 216


>sp|Q17389|CUL1_CAEEL Cullin-1 OS=Caenorhabditis elegans GN=cul-1
           PE=1 SV=1
          Length = 780

 Score = 31.2 bits (69), Expect = 3.6
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
 Frame = -1

Query: 520 CDQLPFMVEDSNTVEEGELCVIYEDESAKDIVG*CIGPIEGKADENL---SDVLLSSTMD 350
           C  L F  +DS TVE+       +++SA  IVG  I  +  KAD  L    +V +++T+ 
Sbjct: 614 CTMLLFNEQDSYTVEQIAAATKMDEKSAPAIVGSLIKNLVLKADTELQKEDEVPMTATVS 673

Query: 349 IEDKQVNMK 323
           +    +N K
Sbjct: 674 LNKAYMNKK 682


>sp|Q89WI2|SYFB_BRAJA Phenylalanyl-tRNA synthetase beta chain
           OS=Bradyrhizobium japonicum GN=pheT PE=3 SV=1
          Length = 802

 Score = 30.0 bits (66), Expect = 8.0
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -1

Query: 463 CVIYEDESAKDIVG*CIGPIEGKADENLSDVLLSSTM--DIEDKQVNMKDGIN 311
           CVI ++   + + G   G   G  DEN +DVL+ S +  +I   Q   K GIN
Sbjct: 303 CVIADEHGVESLAGIMGGEASG-CDENTTDVLIESALWNEINIAQTGRKLGIN 354


>sp|A8G4D2|EFTS_PROM2 Elongation factor Ts OS=Prochlorococcus
           marinus (strain MIT 9215) GN=tsf PE=3 SV=1
          Length = 218

 Score = 30.0 bits (66), Expect = 8.0
 Identities = 24/120 (20%), Positives = 56/120 (46%), Gaps = 5/120 (4%)
 Frame = -1

Query: 550 ASCKEIQEAACDQLPF-MVEDSNTVEEGELCVIYEDESAKDIVG*CIGPIEGKADENLSD 374
           A+C  ++  + D++P  +V+    +E G   +  + E  K+ +      +EG+  + L++
Sbjct: 103 AACPNVEYVSIDEIPEDVVKKEKQIEMGRDDLSGKPEQIKEKI------VEGRIAKRLNE 156

Query: 373 VLLSSTMDIEDKQVNMKDGINDCKEI*NDNIR----SHDALADGNEGRSMSAGGELMSAE 206
           ++L S   I+D  + +++ +        +NI+    +   L +G E   M    E+ S +
Sbjct: 157 LVLLSQPYIKDSSLTVEELVKQAAAKIGENIKVRRFTRYTLGEGIEKNQMDFAEEVASMQ 216
tr_hit_id A6LTR2
Definition tr|A6LTR2|A6LTR2_CLOB8 Sporulation protein YtxC OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052)
Align length 108
Score (bit) 34.7
E-value 3.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912272|Adiantum capillus-veneris mRNA, clone:
YMU001_000017_B04.
         (556 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6LTR2|A6LTR2_CLOB8 Sporulation protein YtxC OS=Clostridium b...    35   3.6  
tr|B6AHB0|B6AHB0_9CRYT Putative uncharacterized protein OS=Crypt...    34   6.1  

>tr|A6LTR2|A6LTR2_CLOB8 Sporulation protein YtxC OS=Clostridium
           beijerinckii (strain ATCC 51743 / NCIMB 8052)
           GN=Cbei_1568 PE=4 SV=1
          Length = 299

 Score = 34.7 bits (78), Expect = 3.6
 Identities = 25/108 (23%), Positives = 51/108 (47%), Gaps = 11/108 (10%)
 Frame = -1

Query: 538 EIQEAACDQLPFMVEDSNTVEEGELCVIYEDESAKDIVG*CIGPI---EGKADENLSDVL 368
           EIQE   +++  +VED+N         I  D+  KD+       I   + KA+ N+ D+L
Sbjct: 191 EIQECKIEEINIIVEDNN--------YIVRDKEGKDLYYDFFSEIATDQNKAELNMEDIL 242

Query: 367 LSSTMDIEDKQVNM--------KDGINDCKEI*NDNIRSHDALADGNE 248
           +S  +    + +N+        K+ ++  + +  D +  ++A +D N+
Sbjct: 243 ISGLITSAPENINIYGKEKCSNKEFLDTIQNVFGDKVHFYEANSDYNK 290


>tr|B6AHB0|B6AHB0_9CRYT Putative uncharacterized protein
           OS=Cryptosporidium muris RN66 GN=CMU_005280 PE=4 SV=1
          Length = 164

 Score = 33.9 bits (76), Expect = 6.1
 Identities = 13/37 (35%), Positives = 25/37 (67%)
 Frame = -1

Query: 382 LSDVLLSSTMDIEDKQVNMKDGINDCKEI*NDNIRSH 272
           +++++LSS  D  +K +N+K+GI +   + N+N  SH
Sbjct: 22  INNLILSSNKDYRNKSINIKEGIIETNNLINNNTESH 58