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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912274
Clone id YMU001_000017_B06
Library
Length 561
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000017_B06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTTTGCACTAATCACATTATCACCGTGTGGTTAAACTTTTTGAAGAACAACTCACCACCG
TTTTAAAAAGTACAAACAGCAGCAGTTTACAGTACATTTCACCATGCTGTACATTCTTTA
ACACAGCCTTTCCTGTCATTTACATCTTCCATTCAGATGGCCTGGCTGTGTATCACAAAA
AAATCAAGAATCTGTTTGTATTGATGCAGATTATCCAAATCCTCAGCAGGATGCTCCTTC
TGTTAGAGCAAGCCAGTGGCTTTGCAAATACCATTCACTGGCAGGCTCCACTTGCTTGAT
GTATGTGCAAAGAAGCGCTCCAAGAAACCGTCTGATCAGGACCTTGGTTCTACTCTTCAT
CCATCAGCAACAAAGTTGAATTCAATGAAAAAAGAGCAGACCGACATTCAAATAGGCGGG
TGCTGCGGAGGATGACCGCCTGAGCTGTTTACATGAACAATTCCCTTGCCTCGATCTATT
GATTCAGCTTCTTGGAATGAGGCATGACCGTTGGGATCGTCAACATGAACACTTCCCTTA
CCCTTATTCACTGACTCATCT
■■Homology search results ■■ -
sp_hit_id Q13BH6
Definition sp|Q13BH6|NDVA_RHOPS Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Rhodopseudomonas palustris (strain BisB5)
Align length 57
Score (bit) 26.2
E-value 3.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912274|Adiantum capillus-veneris mRNA, clone:
YMU001_000017_B06.
         (561 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q13BH6|NDVA_RHOPS Beta-(1-->2)glucan export ATP-binding/perme...    26   3.3  
sp|Q87AQ6|TOP1_XYLFT DNA topoisomerase 1 OS=Xylella fastidiosa (...    31   4.8  
sp|Q9PEV8|TOP1_XYLFA DNA topoisomerase 1 OS=Xylella fastidiosa G...    31   4.8  
sp|P38450|YMF01_MARPO Uncharacterized mitochondrial protein ymf1...    30   6.2  
sp|Q9CR96|TM208_MOUSE Transmembrane protein 208 OS=Mus musculus ...    30   6.2  
sp|Q07QX6|NDVA_RHOP5 Beta-(1-->2)glucan export ATP-binding/perme...    30   6.2  
sp|Q3SZZ5|TM208_BOVIN Transmembrane protein 208 OS=Bos taurus GN...    30   8.1  

>sp|Q13BH6|NDVA_RHOPS Beta-(1-->2)glucan export ATP-binding/permease
           protein ndvA OS=Rhodopseudomonas palustris (strain
           BisB5) GN=ndvA PE=3 SV=1
          Length = 602

 Score = 26.2 bits (56), Expect(2) = 3.3
 Identities = 14/57 (24%), Positives = 31/57 (54%)
 Frame = +3

Query: 120 NTAFPVIYIFHSDGLAVYHKKIKNLFVLMQIIQILSRMLLLLEQASGFANTIHWQAP 290
           +T   V+ IF S G+A+  + + ++  ++  +   + ++  LEQ   F N++  +AP
Sbjct: 259 STTITVLAIF-SLGIALNQQGLTSVGEIVMFVSFATLLIQRLEQVVSFVNSLMMEAP 314



 Score = 22.7 bits (47), Expect(2) = 3.3
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 277 TGRLHLLDVCAKKRSKKPSDQDLGSTLHPSAT 372
           +G +  LDV      K+P+ +DL  T  P  T
Sbjct: 342 SGLVEFLDVSFSYDGKRPAIEDLSFTALPGQT 373


>sp|Q87AQ6|TOP1_XYLFT DNA topoisomerase 1 OS=Xylella fastidiosa
           (strain Temecula1 / ATCC 700964) GN=topA PE=3 SV=1
          Length = 815

 Score = 30.8 bits (68), Expect = 4.8
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +1

Query: 280 GRLHLLDVCAKKRSKKPSDQDLGSTLHPSATK 375
           GRLH+ DV  K+R ++P+   + STL   A++
Sbjct: 244 GRLHITDVTNKERKRRPAPPFITSTLQQEASR 275


>sp|Q9PEV8|TOP1_XYLFA DNA topoisomerase 1 OS=Xylella fastidiosa
           GN=topA PE=3 SV=1
          Length = 815

 Score = 30.8 bits (68), Expect = 4.8
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +1

Query: 280 GRLHLLDVCAKKRSKKPSDQDLGSTLHPSATK 375
           GRLH+ DV  K+R ++P+   + STL   A++
Sbjct: 244 GRLHITDVTNKERKRRPAPPFITSTLQQEASR 275


>sp|P38450|YMF01_MARPO Uncharacterized mitochondrial protein ymf1
           OS=Marchantia polymorpha GN=YMF1 PE=4 SV=1
          Length = 168

 Score = 30.4 bits (67), Expect = 6.2
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 215 PNPQQDAPSVRASQWLCKYHSLAGSTCLMYVQRSAPRN 328
           PN Q D        W+ +  S AG TC++Y+ + AP N
Sbjct: 70  PNNQGD--------WIAQLASSAGPTCILYLAKEAPNN 99


>sp|Q9CR96|TM208_MOUSE Transmembrane protein 208 OS=Mus musculus
           GN=Tmem208 PE=2 SV=1
          Length = 173

 Score = 30.4 bits (67), Expect = 6.2
 Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
 Frame = +3

Query: 183 IKNLFVLMQIIQILSRMLLLLEQ----ASGFANTIHWQAPLA*CMCKEALQETV*SGPWF 350
           +K++ +L  I+Q+LS   L +      A G A  + W   L               GPWF
Sbjct: 102 LKDVILLTAIVQVLSCFSLYIWSFWLLAPGRALYLLWVNVL---------------GPWF 146

Query: 351 YSSSISNKVEFNEKRADRHSNRRVLR 428
            + S +   E NEKR  R   R++ R
Sbjct: 147 TADSGAPAPELNEKRQRRQERRQMKR 172


>sp|Q07QX6|NDVA_RHOP5 Beta-(1-->2)glucan export ATP-binding/permease
           protein ndvA OS=Rhodopseudomonas palustris (strain
           BisA53) GN=ndvA PE=3 SV=1
          Length = 602

 Score = 30.4 bits (67), Expect = 6.2
 Identities = 14/57 (24%), Positives = 33/57 (57%)
 Frame = +3

Query: 120 NTAFPVIYIFHSDGLAVYHKKIKNLFVLMQIIQILSRMLLLLEQASGFANTIHWQAP 290
           +T   V+ IF + G+A++ + + ++  ++  +   + ++  LEQ  GF N++  +AP
Sbjct: 259 STTITVLAIF-TVGIALHEQGLTSVGEIVMFVSFATMLIQKLEQVVGFVNSVFMEAP 314


>sp|Q3SZZ5|TM208_BOVIN Transmembrane protein 208 OS=Bos taurus
           GN=TMEM208 PE=2 SV=1
          Length = 173

 Score = 30.0 bits (66), Expect = 8.1
 Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
 Frame = +3

Query: 183 IKNLFVLMQIIQILSRMLLLLEQ----ASGFANTIHWQAPLA*CMCKEALQETV*SGPWF 350
           +K++ +L  I+Q+LS   L +      A G A  + W   L               GPWF
Sbjct: 102 LKDVILLTAIVQVLSCFSLYIWSFWLLAPGRALYLLWVNVL---------------GPWF 146

Query: 351 YSSSISNKVEFNEKRADRHSNRRVLR 428
            + S +   E NEKR  R   R++ R
Sbjct: 147 TADSGAPAPEHNEKRQRRQERRQMKR 172
tr_hit_id A5DXC4
Definition tr|A5DXC4|A5DXC4_LODEL Putative uncharacterized protein OS=Lodderomyces elongisporus
Align length 114
Score (bit) 35.4
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912274|Adiantum capillus-veneris mRNA, clone:
YMU001_000017_B06.
         (561 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5DXC4|A5DXC4_LODEL Putative uncharacterized protein OS=Lodde...    35   2.2  
tr|B2ALH0|B2ALH0_PODAN Predicted CDS Pa_5_3600 OS=Podospora anse...    34   4.7  
tr|Q4Z5T5|Q4Z5T5_PLABE Cg2 protein, putative (Fragment) OS=Plasm...    33   8.1  
tr|A4H415|A4H415_LEIBR Chloride channel protein, putative OS=Lei...    33   8.1  

>tr|A5DXC4|A5DXC4_LODEL Putative uncharacterized protein
           OS=Lodderomyces elongisporus GN=LELG_02011 PE=4 SV=1
          Length = 945

 Score = 35.4 bits (80), Expect = 2.2
 Identities = 33/114 (28%), Positives = 51/114 (44%)
 Frame = +1

Query: 73  QTAAVYSTFHHAVHSLTQPFLSFTSSIQMAWLCITKKSRICLY*CRLSKSSAGCSFC*SK 252
           QT  +  TFH  VH L     S TSS+ MA L  +++ R+ L   R+    +  S     
Sbjct: 638 QTDRLLDTFHRVVHDLKVNLRSRTSSVTMA-LTDSQQRRLELQKLRVEHELSKTSLDTPT 696

Query: 253 PVALQIPFTGRLHLLDVCAKKRSKKPSDQDLGSTLHPSATKLNSMKKEQTDIQI 414
              +Q+ F      +DV   KR+K+ S+   G TL P A   ++       I++
Sbjct: 697 THPIQLDFDNDASAVDV--TKRAKEVSN---GDTLPPPAASASAASGSSIPIKV 745


>tr|B2ALH0|B2ALH0_PODAN Predicted CDS Pa_5_3600 OS=Podospora
           anserina PE=4 SV=1
          Length = 325

 Score = 34.3 bits (77), Expect = 4.7
 Identities = 19/81 (23%), Positives = 39/81 (48%)
 Frame = +3

Query: 51  LTTVLKSTNSSSLQYISPCCTFFNTAFPVIYIFHSDGLAVYHKKIKNLFVLMQIIQILSR 230
           LT +L    +S +   S C  F  T+  ++  F+ +GL  + +++     LM+  + L  
Sbjct: 201 LTVLLNCAGASDVGRASSCLDFMETSPGILTSFYQEGLDRWEQRVTATMQLMR--EALPM 258

Query: 231 MLLLLEQASGFANTIHWQAPL 293
            + L+    GF++  +W+  L
Sbjct: 259 AITLVPNGVGFSSESNWETGL 279


>tr|Q4Z5T5|Q4Z5T5_PLABE Cg2 protein, putative (Fragment)
           OS=Plasmodium berghei GN=PB000524.00.0 PE=4 SV=1
          Length = 782

 Score = 33.5 bits (75), Expect = 8.1
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = +3

Query: 42  EEQLTTVLKSTNS--SSLQYISPCCTFFNTAFPVIYIFHSDGLAVYHKKIKNLFVLMQII 215
           E Q  ++ KS      SL +I+ C   +N     IY+   +   +Y KK KN+F L+++I
Sbjct: 675 ENQNNSINKSYEKILKSLLFINICFNSYNEYINKIYLGEKENFNIYLKKKKNIFDLLKLI 734

Query: 216 QI 221
            +
Sbjct: 735 SL 736


>tr|A4H415|A4H415_LEIBR Chloride channel protein, putative
            OS=Leishmania braziliensis GN=LbrM04_V2.1010 PE=4 SV=1
          Length = 1185

 Score = 33.5 bits (75), Expect = 8.1
 Identities = 18/42 (42%), Positives = 22/42 (52%)
 Frame = -2

Query: 512  NGHASFQEAESIDRGKGIVHVNSSGGHPPQHPPI*MSVCSFF 387
            NG+ S  E E+  RG+GI H    G H P  PP+   V S F
Sbjct: 1134 NGNTSAAEGET--RGRGISHSFEPGHHTPVSPPLPAEVASLF 1173