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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912284
Clone id YMU001_000017_C04
Library
Length 393
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000017_C04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GCTGAGAAAATCATGTTTTGTGTCTCGAGAAAATCCATTGATCACATACCAAATACCATT
CAAAGCAGTGTATGTAGAAGTCAGAACCGTGCAATGATGTGTGAAGCGGTTTCAGGAGTC
GTCCGTAACCTCTTGAACAATTGTTCAACAAACTGACACTTTCGTAATTGTTGTCTGTTT
CTTTGTTTAGATTGCCTCACACAAAACCAGCTTCATGCCACTTCCTCAATTCCCAACATA
AGCTGTTTAAGCACTGGACACACAAAGACTCCCGCATGTCTTACACTCTTTTTTCACCAT
GTTGCTTAGCTTTACCATTACTTGCTTAGATTTCTTCAACCTCAAAAATCAACCTCATGC
CACTTCTTCAGTTTCCAACATGGCTCGTTTGAG
■■Homology search results ■■ -
sp_hit_id Q6U820
Definition sp|Q6U820|PLB1_ASPFU Lysophospholipase 1 OS=Aspergillus fumigatus
Align length 46
Score (bit) 31.2
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912284|Adiantum capillus-veneris mRNA, clone:
YMU001_000017_C04.
         (393 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6U820|PLB1_ASPFU Lysophospholipase 1 OS=Aspergillus fumigatu...    31   1.7  
sp|Q1GYR5|Y2355_METFK UPF0082 protein Mfla_2355 OS=Methylobacill...    30   2.9  
sp|Q705H5|VL2_HPV43 Minor capsid protein L2 OS=Human papillomavi...    30   4.9  
sp|Q6NRP2|PSME4_XENLA Proteasome activator complex subunit 4 OS=...    30   4.9  
sp|Q01064|PDE1B_HUMAN Calcium/calmodulin-dependent 3',5'-cyclic ...    30   4.9  
sp|Q01066|PDE1B_RAT Calcium/calmodulin-dependent 3',5'-cyclic nu...    29   6.4  
sp|Q01065|PDE1B_MOUSE Calcium/calmodulin-dependent 3',5'-cyclic ...    29   6.4  
sp|Q64395|PDE1B_CRIGR Calcium/calmodulin-dependent 3',5'-cyclic ...    29   6.4  
sp|P13499|GLNA_RHOCA Glutamine synthetase (Fragment) OS=Rhodobac...    29   8.4  

>sp|Q6U820|PLB1_ASPFU Lysophospholipase 1 OS=Aspergillus fumigatus
           GN=plb1 PE=1 SV=1
          Length = 633

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -3

Query: 265 LCVQCLNSLCWELRKWHEAGFV*GNLNKETDNNYESVSLLNNCSRG 128
           +C QC    CW+           G+LN  T   YE V++L++ + G
Sbjct: 579 ICKQCFQRYCWD-----------GSLNSTTPAGYEPVTILDSAASG 613


>sp|Q1GYR5|Y2355_METFK UPF0082 protein Mfla_2355 OS=Methylobacillus
           flagellatus (strain KT / ATCC 51484 / DSM 6875)
           GN=Mfla_2355 PE=3 SV=1
          Length = 241

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +1

Query: 181 LCLDCLTQNQLHATSSIPNISCLSTGHTKTPACLTLFFHH 300
           L +DCLT N+  A + + ++     G+  T  C+   F H
Sbjct: 97  LIIDCLTDNKQRAVADVRHVLSKHGGNLGTDGCVAFMFKH 136


>sp|Q705H5|VL2_HPV43 Minor capsid protein L2 OS=Human papillomavirus
           type 43 GN=L2 PE=3 SV=1
          Length = 463

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 115 LKPLHTSLHGSDFYIHCFEWYL 50
           + P   S+HG+DFY+H   W+L
Sbjct: 424 ISPQSVSIHGTDFYLHPSLWHL 445


>sp|Q6NRP2|PSME4_XENLA Proteasome activator complex subunit 4
           OS=Xenopus laevis GN=psme4 PE=2 SV=1
          Length = 1828

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 196 GNLNKETDNNYESVSLLNNCSRGYGRLLKPLH 101
           G L    D   + +++++NC  G G LL PLH
Sbjct: 788 GELEMSRDEVQQCLAIVHNCLTGSGNLLPPLH 819


>sp|Q01064|PDE1B_HUMAN Calcium/calmodulin-dependent 3',5'-cyclic
           nucleotide phosphodiesterase 1B OS=Homo sapiens GN=PDE1B
           PE=1 SV=2
          Length = 536

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = -3

Query: 157 VSLLNNCSRGYGRLLKPLHTSLHGSDF--YIHCF 62
           +S L+    GYG+   P H  +H +D    +HCF
Sbjct: 205 MSFLDALETGYGKYKNPYHNQIHAADVTQTVHCF 238


>sp|Q01066|PDE1B_RAT Calcium/calmodulin-dependent 3',5'-cyclic
           nucleotide phosphodiesterase 1B OS=Rattus norvegicus
           GN=Pde1b PE=2 SV=1
          Length = 535

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
 Frame = -3

Query: 157 VSLLNNCSRGYGRLLKPLHTSLHGSDF--YIHCF 62
           +S L     GYG+   P H  +H +D    +HCF
Sbjct: 204 MSFLEALETGYGKYKNPYHNQIHAADVTQTVHCF 237


>sp|Q01065|PDE1B_MOUSE Calcium/calmodulin-dependent 3',5'-cyclic
           nucleotide phosphodiesterase 1B OS=Mus musculus GN=Pde1b
           PE=1 SV=2
          Length = 535

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
 Frame = -3

Query: 157 VSLLNNCSRGYGRLLKPLHTSLHGSDF--YIHCF 62
           +S L     GYG+   P H  +H +D    +HCF
Sbjct: 204 MSFLEALETGYGKYKNPYHNQIHAADVTQTVHCF 237


>sp|Q64395|PDE1B_CRIGR Calcium/calmodulin-dependent 3',5'-cyclic
           nucleotide phosphodiesterase 1B (Fragment) OS=Cricetulus
           griseus GN=PDE1B1 PE=2 SV=1
          Length = 199

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
 Frame = -3

Query: 157 VSLLNNCSRGYGRLLKPLHTSLHGSDF--YIHCF 62
           +S L     GYG+   P H  +H +D    +HCF
Sbjct: 13  MSFLEALETGYGKYKNPYHNQIHAADVTQTVHCF 46


>sp|P13499|GLNA_RHOCA Glutamine synthetase (Fragment) OS=Rhodobacter
           capsulatus GN=glnA PE=3 SV=2
          Length = 438

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
 Frame = -3

Query: 217 HEAGFV*GNLNKETDNNYESVSLLNNCSRGYGRLL----KPLHTSLHGSDFYIHCFEW 56
           HE G + G L ++ DN  +   +++N +  YG+ +    KP+    +GS  +++   W
Sbjct: 219 HELGLIFGGLTEQADNILKYKYVIHNVAHAYGKTVTFMPKPMKGD-NGSGMHVNMSIW 275
tr_hit_id B4LUW4
Definition tr|B4LUW4|B4LUW4_DROVI GJ17388 OS=Drosophila virilis
Align length 43
Score (bit) 33.1
E-value 7.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912284|Adiantum capillus-veneris mRNA, clone:
YMU001_000017_C04.
         (393 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4LUW4|B4LUW4_DROVI GJ17388 OS=Drosophila virilis GN=GJ17388 ...    33   7.1  
tr|B5DJ80|B5DJ80_DROPS GA26108 OS=Drosophila pseudoobscura pseud...    33   9.2  
tr|A0BIM8|A0BIM8_PARTE Chromosome undetermined scaffold_11, whol...    33   9.2  

>tr|B4LUW4|B4LUW4_DROVI GJ17388 OS=Drosophila virilis GN=GJ17388 PE=4
            SV=1
          Length = 13499

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +1

Query: 19   CVSRKSIDHIPNTI-QSSVCRSQNRAMMCEAVSGVVRNLLNNC 144
            CV+RK +D  PN   Q + CR +N + +C  ++G   +    C
Sbjct: 5036 CVNRKCVDPCPNVCGQQAECRVRNHSPICTCLNGFTGDAFTRC 5078


>tr|B5DJ80|B5DJ80_DROPS GA26108 OS=Drosophila pseudoobscura
            pseudoobscura GN=GA26108 PE=4 SV=1
          Length = 17011

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +1

Query: 19   CVSRKSIDHIPNTI-QSSVCRSQNRAMMCEAVSGVVRNLLNNC 144
            CV+RK +D  PN   Q + CR +N   +C  +SG   +    C
Sbjct: 8727 CVNRKCVDPCPNVCGQQAECRVRNHNPICSCLSGYTGDPFTRC 8769


>tr|A0BIM8|A0BIM8_PARTE Chromosome undetermined scaffold_11, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00004767001 PE=4 SV=1
          Length = 1786

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
 Frame = +1

Query: 34  SIDHIPNTIQSSVC--RSQNRAMMCEAVSGVVRNLLNNCSTN*HFRNC--CLFLCLDCLT 201
           + DHI    Q  VC  ++ N    C  + G   N +N      HF NC  C++   +CLT
Sbjct: 700 NFDHIEINGQC-VCNLKNFNNISNCSCLDGYYLNNINKKCLPCHF-NCITCIYAATNCLT 757

Query: 202 QNQLHATSSIPNISCLSTGHTKTPACL 282
            N  HA    PN  C    + +   CL
Sbjct: 758 CNDYHAQP--PNCECSPGFYLQDFECL 782