BP912286 |
Clone id |
YMU001_000017_C07 |
Library |
YMU01 |
Length |
596 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000017_C07. |
Accession |
BP912286 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL246Contig1 |
Sequence |
GTGATCAAAGCTTCATCCGCTTCTAAAGTGGTAAGATCATCCTCCACATCCTCCATGTTT TCAGGTGAAAACTCCTGATCCTCTTCATATTTCCCCATCTTTGCATGAGCACTGTCACCT CCATTCTTATGTGACACCTCTTTCTTTGAGGATGCAGCCATCCCCTCTGCTTCGTCGAGG CATATTCAGATCCTTGCTCTGATCATGCACATGACTGTCTCCATTTGAATCAAAAGTTTG TGTGTTGGAAATAACCACTTGATTTCCTGTAGCCACAAGACTCCCTTGTCTTTGATCATT ATTGTGTACCTGAGGTCTTTGCTTGAGATTGAAATCTTCTCCATCAGCATTTGACACAGC ATAATCTTGTATGTCCTCAAGCGCATTGGCAGGCTGCAACTCCTCTGTAGGGGCATCCAT CCAGATCTCAGCTAACATTGTCGAGTATCTCTCTGTTTGACCAACAAGAAAATCAAGATG CTTGTCCAGCGCTTTTTTCTTGATGCCTTCAAGCACCATTTGGTGCTTATACATAATCAG CTTTTCAATTTTCGTCCAGAATTTCTTCACGTCCTTAGAAATATTGCTTGCAAGCC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q6ZRS2 |
Definition |
sp|Q6ZRS2|SRCAP_HUMAN Helicase SRCAP OS=Homo sapiens |
Align length |
56 |
Score (bit) |
71.6 |
E-value |
3.0e-12 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q6ZGY4 |
Definition |
tr|Q6ZGY4|Q6ZGY4_ORYSJ Putative photoperiod independent early flowering1 OS=Oryza sativa subsp. japonica |
Align length |
60 |
Score (bit) |
92.8 |
E-value |
1.0e-17 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP912286|Adiantum capillus-veneris mRNA, clone: YMU001_000017_C07. (596 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q6ZGY4|Q6ZGY4_ORYSJ Putative photoperiod independent early fl... 93 1e-17 tr|A9S832|A9S832_PHYPA SWR1 complex protein, SNF2 family DNA-dep... 92 2e-17 tr|A9U2Y8|A9U2Y8_PHYPA SWR1 complex protein, SNF2 family DNA-dep... 89 1e-16 tr|Q9LTV5|Q9LTV5_ARATH Helicase-like protein OS=Arabidopsis thal... 87 6e-16 tr|Q7X9V2|Q7X9V2_ARATH Photoperiod independent early flowering1 ... 87 6e-16 tr|Q3U4M6|Q3U4M6_MOUSE Putative uncharacterized protein OS=Mus m... 73 1e-11 tr|Q6P4A2|Q6P4A2_HUMAN SRCAP protein (Fragment) OS=Homo sapiens ... 72 3e-11 tr|B0JZA6|B0JZA6_HUMAN SRCAP protein OS=Homo sapiens GN=SRCAP PE... 72 3e-11 tr|Q4SFE5|Q4SFE5_TETNG Chromosome 2 SCAF14604, whole genome shot... 70 1e-10 tr|B3MBX4|B3MBX4_DROAN GF12812 OS=Drosophila ananassae GN=GF1281... 70 1e-10 tr|B5E1L0|B5E1L0_DROPS GA24314 OS=Drosophila pseudoobscura pseud... 69 2e-10 tr|B4GI08|B4GI08_DROPE GL16840 OS=Drosophila persimilis GN=GL168... 69 2e-10 tr|B4P902|B4P902_DROYA Domino OS=Drosophila yakuba GN=Dyak\dom P... 69 3e-10 tr|B4MJU2|B4MJU2_DROWI GK20897 OS=Drosophila willistoni GN=GK208... 69 3e-10 tr|B4LLH7|B4LLH7_DROVI GJ20044 OS=Drosophila virilis GN=GJ20044 ... 69 3e-10 tr|B4KRF8|B4KRF8_DROMO GI19071 OS=Drosophila mojavensis GN=GI190... 69 3e-10 tr|B4J6Z7|B4J6Z7_DROGR GH20710 OS=Drosophila grimshawi GN=GH2071... 69 3e-10 tr|B3NJL6|B3NJL6_DROER GG22110 OS=Drosophila erecta GN=GG22110 P... 69 3e-10 tr|Q28EN0|Q28EN0_XENTR Novel protein (Fragment) OS=Xenopus tropi... 68 3e-10 tr|B6MUW8|B6MUW8_BRAFL Putative uncharacterized protein OS=Branc... 68 5e-10 tr|Q8MLW2|Q8MLW2_DROME Domino, isoform D OS=Drosophila melanogas... 67 8e-10 tr|B6NEC3|B6NEC3_BRAFL Putative uncharacterized protein OS=Branc... 67 8e-10 tr|B5RJR0|B5RJR0_DROME LP03212p (Fragment) OS=Drosophila melanog... 67 8e-10 tr|B5RJJ7|B5RJJ7_DROME LD35056p (Fragment) OS=Drosophila melanog... 67 8e-10 tr|B4QG22|B4QG22_DROSI GD11588 OS=Drosophila simulans GN=GD11588... 67 8e-10 tr|B4I7P3|B4I7P3_DROSE GM15831 OS=Drosophila sechellia GN=GM1583... 67 8e-10 tr|A5AP91|A5AP91_VITVI Putative uncharacterized protein OS=Vitis... 66 2e-09 tr|B7QDK0|B7QDK0_IXOSC E1A-binding protein p400, putative (Fragm... 65 4e-09 tr|Q17L58|Q17L58_AEDAE E1a binding protein P400 OS=Aedes aegypti... 64 9e-09 tr|Q55GK2|Q55GK2_DICDI Myb domain-containing protein OS=Dictyost... 63 1e-08
>tr|Q6ZGY4|Q6ZGY4_ORYSJ Putative photoperiod independent early flowering1 OS=Oryza sativa subsp. japonica GN=OJ1743_B12.28 PE=4 SV=1 Length = 2021
Score = 92.8 bits (229), Expect = 1e-17 Identities = 46/60 (76%), Positives = 52/60 (86%) Frame = -3
Query: 594 LASNISKDVKKFWTKIEKLIMYKHQMVLEGIKKKALDKHLDFLVGQTERYSTMLAEIWMD 415 +A NISKDVKKFWTKIEKL+ YK+Q+ LE KKKALDK LDFL+GQTERYSTMLAE +D Sbjct: 93 VALNISKDVKKFWTKIEKLVFYKNQLELEERKKKALDKQLDFLLGQTERYSTMLAENLVD 152
>tr|A9S832|A9S832_PHYPA SWR1 complex protein, SNF2 family DNA-dependent ATPase (Fragment) OS=Physcomitrella patens subsp. patens GN=CHR1515 PE=4 SV=1 Length = 1780
Score = 92.4 bits (228), Expect = 2e-17 Identities = 44/63 (69%), Positives = 53/63 (84%) Frame = -3
Query: 594 LASNISKDVKKFWTKIEKLIMYKHQMVLEGIKKKALDKHLDFLVGQTERYSTMLAEIWMD 415 +ASNI+KDVKKFW K++KL+ YK Q+++E KKKALDKHLDFL+GQTERYSTMLAE D Sbjct: 79 VASNIAKDVKKFWLKVDKLVSYKQQLLVEERKKKALDKHLDFLLGQTERYSTMLAENLAD 138
Query: 414 APT 406 T Sbjct: 139 NTT 141
Score = 34.7 bits (78), Expect = 4.3 Identities = 17/28 (60%), Positives = 20/28 (71%) Frame = -1
Query: 86 EEDQEFSPENMEDVEDDLTTLEADEALI 3 E D EF E+ ++ EDD TLEADEALI Sbjct: 191 EGDDEFIVEDKDEQEDDEATLEADEALI 218
>tr|A9U2Y8|A9U2Y8_PHYPA SWR1 complex protein, SNF2 family DNA-dependent ATPase (Fragment) OS=Physcomitrella patens subsp. patens GN=CHR1545 PE=4 SV=1 Length = 1727
Score = 89.4 bits (220), Expect = 1e-16 Identities = 48/74 (64%), Positives = 58/74 (78%), Gaps = 2/74 (2%) Frame = -3
Query: 594 LASNISKDVKKFWTKIEKLIMYKHQMVLEGIKKKALDKHLDFLVGQTE-RYSTMLAEIWM 418 +ASNI+KDV+KFW K+EKL+ YK Q+++E KKKALDKHLDFL+GQTE RYSTMLAE Sbjct: 66 VASNIAKDVRKFWLKVEKLVSYKQQLLVEERKKKALDKHLDFLLGQTESRYSTMLAENLA 125
Query: 417 DAPTE-ELQPANAL 379 D T ELQ + L Sbjct: 126 DTTTTYELQISQPL 139
Score = 33.9 bits (76), Expect = 7.3 Identities = 16/26 (61%), Positives = 19/26 (73%) Frame = -1
Query: 80 DQEFSPENMEDVEDDLTTLEADEALI 3 D +F E ++ EDD TTLEADEALI Sbjct: 182 DDDFMVEEEDEPEDDETTLEADEALI 207
>tr|Q9LTV5|Q9LTV5_ARATH Helicase-like protein OS=Arabidopsis thaliana PE=4 SV=1 Length = 2061
Score = 87.4 bits (215), Expect = 6e-16 Identities = 40/56 (71%), Positives = 49/56 (87%) Frame = -3
Query: 594 LASNISKDVKKFWTKIEKLIMYKHQMVLEGIKKKALDKHLDFLVGQTERYSTMLAE 427 +A NISKD+KKFW K+EKL++YKHQ+V KKKA+DK L+FL+GQTERYSTMLAE Sbjct: 105 VALNISKDMKKFWMKVEKLVLYKHQLVRNEKKKKAMDKQLEFLLGQTERYSTMLAE 160
>tr|Q7X9V2|Q7X9V2_ARATH Photoperiod independent early flowering1 OS=Arabidopsis thaliana GN=PIE1 PE=1 SV=1 Length = 2055
Score = 87.4 bits (215), Expect = 6e-16 Identities = 40/56 (71%), Positives = 49/56 (87%) Frame = -3
Query: 594 LASNISKDVKKFWTKIEKLIMYKHQMVLEGIKKKALDKHLDFLVGQTERYSTMLAE 427 +A NISKD+KKFW K+EKL++YKHQ+V KKKA+DK L+FL+GQTERYSTMLAE Sbjct: 105 VALNISKDMKKFWMKVEKLVLYKHQLVRNEKKKKAMDKQLEFLLGQTERYSTMLAE 160
>tr|Q3U4M6|Q3U4M6_MOUSE Putative uncharacterized protein OS=Mus musculus GN=Srcap PE=2 SV=1 Length = 936
Score = 73.2 bits (178), Expect = 1e-11 Identities = 38/107 (35%), Positives = 62/107 (57%), Gaps = 6/107 (5%) Frame = -3
Query: 594 LASNISKDVKKFWTKIEKLIMYKHQMVLEGIKKKALDKHLDFLVGQTERYSTMLAEIWMD 415 +AS ++KDV++FW+ +EK++ +K Q LE +KKALD HLDF+VGQTE+YS +L++ Sbjct: 175 IASTMAKDVRQFWSNVEKVVQFKQQSRLEEKRKKALDLHLDFIVGQTEKYSDLLSQSLNQ 234
Query: 414 APTEELQPANALEDIQDYA------VSNADGEDFNLKQRPQVHNNDQ 292 P ++ A VS D ED + + + + +D+ Sbjct: 235 PPASSKAGSSPCLGSSSAASSPPPPVSRLDDEDGDFQPQEEEEEDDE 281
>tr|Q6P4A2|Q6P4A2_HUMAN SRCAP protein (Fragment) OS=Homo sapiens GN=SRCAP PE=2 SV=1 Length = 584
Score = 71.6 bits (174), Expect = 3e-11 Identities = 30/56 (53%), Positives = 46/56 (82%) Frame = -3
Query: 594 LASNISKDVKKFWTKIEKLIMYKHQMVLEGIKKKALDKHLDFLVGQTERYSTMLAE 427 +AS ++KDV++FW+ +EK++ +K Q LE +KKALD HLDF+VGQTE+YS +L++ Sbjct: 194 IASTMAKDVRQFWSNVEKVVQFKQQSRLEEKRKKALDLHLDFIVGQTEKYSDLLSQ 249
>tr|B0JZA6|B0JZA6_HUMAN SRCAP protein OS=Homo sapiens GN=SRCAP PE=2 SV=1 Length = 3049
Score = 71.6 bits (174), Expect = 3e-11 Identities = 30/56 (53%), Positives = 46/56 (82%) Frame = -3
Query: 594 LASNISKDVKKFWTKIEKLIMYKHQMVLEGIKKKALDKHLDFLVGQTERYSTMLAE 427 +AS ++KDV++FW+ +EK++ +K Q LE +KKALD HLDF+VGQTE+YS +L++ Sbjct: 171 IASTMAKDVRQFWSNVEKVVQFKQQSRLEEKRKKALDLHLDFIVGQTEKYSDLLSQ 226
>tr|Q4SFE5|Q4SFE5_TETNG Chromosome 2 SCAF14604, whole genome shotgun sequence. (Fragment) OS=Tetraodon nigroviridis GN=GSTENG00019136001 PE=4 SV=1 Length = 4522
Score = 69.7 bits (169), Expect = 1e-10 Identities = 32/68 (47%), Positives = 48/68 (70%) Frame = -3
Query: 594 LASNISKDVKKFWTKIEKLIMYKHQMVLEGIKKKALDKHLDFLVGQTERYSTMLAEIWMD 415 +AS+I+K+V+ FW+ +EK++ YK Q LE +KKALD LDF+VGQTE+YS +L++ Sbjct: 1637 VASSIAKEVRAFWSNVEKVVQYKQQSRLEEKRKKALDLQLDFIVGQTEKYSDLLSKSLAP 1696
Query: 414 APTEELQP 391 E+ P Sbjct: 1697 IKPSEIVP 1704
>tr|B3MBX4|B3MBX4_DROAN GF12812 OS=Drosophila ananassae GN=GF12812 PE=4 SV=1 Length = 3199
Score = 69.7 bits (169), Expect = 1e-10 Identities = 31/56 (55%), Positives = 44/56 (78%) Frame = -3
Query: 594 LASNISKDVKKFWTKIEKLIMYKHQMVLEGIKKKALDKHLDFLVGQTERYSTMLAE 427 +AS I+K+VK FW+ +EKL+ YKHQ +E +K+ALD+HL F+V QTE++S LAE Sbjct: 575 VASFIAKEVKSFWSNVEKLVEYKHQTKIEEKRKQALDQHLSFIVDQTEKFSQQLAE 630
|