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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912287
Clone id YMU001_000017_C08
Library
Length 389
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000017_C08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GTCTTTGATGGTCAGAGGGTTTTGGAGCATAGCACCCCCAAAGACTTTGACATGGAGGAT
GAGGATATCATTGAAGTGAACATCAAAAAATGATGATGTGCAAATGCTTTTGTGAGAGAG
AACATTTTGGTGTCCTTGTTGTCCTTGCAAACCAGTTTTGTTCCAGTTTGAGTGGGGTGT
AAATGTACATTATGTGTACAGGTTTTGGTTGATGTAAGATATGATATTTGTCATGCGGGG
AATTGTGGACTCGACTTTAGCGCACCATGGAGAACCACTTCTCTAAGCCTTATCATTTAG
AAGCCTTTACAAGGTTGTTTCCTTAGGTGAACCTGTGGCAGGATCATCGACACATCCAGC
AGAACAACGTGAACTGCTGATGCAAAAAA
■■Homology search results ■■ -
sp_hit_id Q6DEP7
Definition sp|Q6DEP7|SUMO1_XENTR Small ubiquitin-related modifier 1 OS=Xenopus tropicalis
Align length 26
Score (bit) 40.4
E-value 0.003
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912287|Adiantum capillus-veneris mRNA, clone:
YMU001_000017_C08.
         (389 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6DEP7|SUMO1_XENTR Small ubiquitin-related modifier 1 OS=Xeno...    40   0.003
sp|Q5EAX4|SMO1B_XENLA Small ubiquitin-related modifier 1-B OS=Xe...    40   0.003
sp|O57686|SMO1A_XENLA Small ubiquitin-related modifier 1-A OS=Xe...    40   0.003
sp|Q9PT08|SUMO1_ONCMY Small ubiquitin-related modifier 1 OS=Onco...    39   0.008
sp|Q7SZR5|SUMO1_DANRE Small ubiquitin-related modifier 1 OS=Dani...    39   0.008
sp|Q2EF74|SUMO1_SPETR Small ubiquitin-related modifier 1 OS=Sper...    38   0.018
sp|Q5I0H3|SUMO1_RAT Small ubiquitin-related modifier 1 OS=Rattus...    38   0.018
sp|Q5R6J4|SUMO1_PONAB Small ubiquitin-related modifier 1 OS=Pong...    38   0.018
sp|A7WLH8|SUMO1_PIG Small ubiquitin-related modifier 1 OS=Sus sc...    38   0.018
sp|P63166|SUMO1_MOUSE Small ubiquitin-related modifier 1 OS=Mus ...    38   0.018
sp|P63165|SUMO1_HUMAN Small ubiquitin-related modifier 1 OS=Homo...    38   0.018
sp|Q8QGH2|SUMO1_CHICK Small ubiquitin-related modifier 1 OS=Gall...    38   0.018
sp|Q9MZD5|SUMO1_CERNI Small ubiquitin-related modifier 1 OS=Cerv...    38   0.018
sp|Q5E9D1|SUMO1_BOVIN Small ubiquitin-related modifier 1 OS=Bos ...    38   0.018
sp|P55853|SUMO_CAEEL Small ubiquitin-related modifier OS=Caenorh...    37   0.031
sp|Q12306|SMT3_YEAST Ubiquitin-like protein SMT3 OS=Saccharomyce...    35   0.15 
sp|Q6DK72|SUMO3_XENTR Small ubiquitin-related modifier 3 OS=Xeno...    33   0.58 
sp|Q7SZ22|SUMO3_XENLA Small ubiquitin-related modifier 3 OS=Xeno...    33   0.58 
sp|Q5XIF4|SUMO3_RAT Small ubiquitin-related modifier 3 OS=Rattus...    33   0.58 
sp|Q9Z172|SUMO3_MOUSE Small ubiquitin-related modifier 3 OS=Mus ...    33   0.58 
sp|P55854|SUMO3_HUMAN Small ubiquitin-related modifier 3 OS=Homo...    33   0.58 
sp|Q6DI05|SUMO3_DANRE Small ubiquitin-related modifier 3 OS=Dani...    33   0.58 
sp|Q5ZHQ1|SUMO3_CHICK Small ubiquitin-related modifier 3 OS=Gall...    33   0.58 
sp|Q17QV3|SUMO3_BOVIN Small ubiquitin-related modifier 3 OS=Bos ...    33   0.58 
sp|Q28H04|SUMO2_XENTR Small ubiquitin-related modifier 2 OS=Xeno...    33   0.58 
sp|P61959|SUMO2_RAT Small ubiquitin-related modifier 2 OS=Rattus...    33   0.58 
sp|P61958|SUMO2_PIG Small ubiquitin-related modifier 2 OS=Sus sc...    33   0.58 
sp|P61957|SUMO2_MOUSE Small ubiquitin-related modifier 2 OS=Mus ...    33   0.58 
sp|Q2PFW2|SUMO2_MACFA Small ubiquitin-related modifier 2 OS=Maca...    33   0.58 
sp|P61956|SUMO2_HUMAN Small ubiquitin-related modifier 2 OS=Homo...    33   0.58 

>sp|Q6DEP7|SUMO1_XENTR Small ubiquitin-related modifier 1 OS=Xenopus
           tropicalis GN=sumo1 PE=3 SV=1
          Length = 102

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 15/26 (57%), Positives = 22/26 (84%)
 Frame = +1

Query: 1   VFDGQRVLEHSTPKDFDMEDEDIIEV 78
           +F+GQR+ +H TPK+  ME+ED+IEV
Sbjct: 66  LFEGQRISDHQTPKELGMEEEDVIEV 91


>sp|Q5EAX4|SMO1B_XENLA Small ubiquitin-related modifier 1-B
           OS=Xenopus laevis GN=sumo1-B PE=3 SV=1
          Length = 102

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 15/26 (57%), Positives = 22/26 (84%)
 Frame = +1

Query: 1   VFDGQRVLEHSTPKDFDMEDEDIIEV 78
           +F+GQR+ +H TPK+  ME+ED+IEV
Sbjct: 66  LFEGQRISDHQTPKELGMEEEDVIEV 91


>sp|O57686|SMO1A_XENLA Small ubiquitin-related modifier 1-A
           OS=Xenopus laevis GN=sumo1-A PE=3 SV=1
          Length = 102

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 15/26 (57%), Positives = 22/26 (84%)
 Frame = +1

Query: 1   VFDGQRVLEHSTPKDFDMEDEDIIEV 78
           +F+GQR+ +H TPK+  ME+ED+IEV
Sbjct: 66  LFEGQRISDHQTPKELGMEEEDVIEV 91


>sp|Q9PT08|SUMO1_ONCMY Small ubiquitin-related modifier 1
           OS=Oncorhynchus mykiss GN=sumo1 PE=3 SV=1
          Length = 101

 Score = 38.9 bits (89), Expect = 0.008
 Identities = 15/26 (57%), Positives = 22/26 (84%)
 Frame = +1

Query: 1   VFDGQRVLEHSTPKDFDMEDEDIIEV 78
           +F+GQR+ ++ TPK+  MEDED+IEV
Sbjct: 65  LFEGQRISDNHTPKELGMEDEDVIEV 90


>sp|Q7SZR5|SUMO1_DANRE Small ubiquitin-related modifier 1 OS=Danio
           rerio GN=sumo1 PE=3 SV=1
          Length = 100

 Score = 38.9 bits (89), Expect = 0.008
 Identities = 15/26 (57%), Positives = 22/26 (84%)
 Frame = +1

Query: 1   VFDGQRVLEHSTPKDFDMEDEDIIEV 78
           +F+GQR+ ++ TPK+  MEDED+IEV
Sbjct: 64  LFEGQRITDNLTPKELGMEDEDVIEV 89


>sp|Q2EF74|SUMO1_SPETR Small ubiquitin-related modifier 1
           OS=Spermophilus tridecemlineatus GN=SUMO1 PE=3 SV=1
          Length = 101

 Score = 37.7 bits (86), Expect = 0.018
 Identities = 14/26 (53%), Positives = 22/26 (84%)
 Frame = +1

Query: 1   VFDGQRVLEHSTPKDFDMEDEDIIEV 78
           +F+GQR+ ++ TPK+  ME+ED+IEV
Sbjct: 65  LFEGQRIADNHTPKELGMEEEDVIEV 90


>sp|Q5I0H3|SUMO1_RAT Small ubiquitin-related modifier 1 OS=Rattus
           norvegicus GN=Sumo1 PE=1 SV=1
          Length = 101

 Score = 37.7 bits (86), Expect = 0.018
 Identities = 14/26 (53%), Positives = 22/26 (84%)
 Frame = +1

Query: 1   VFDGQRVLEHSTPKDFDMEDEDIIEV 78
           +F+GQR+ ++ TPK+  ME+ED+IEV
Sbjct: 65  LFEGQRIADNHTPKELGMEEEDVIEV 90


>sp|Q5R6J4|SUMO1_PONAB Small ubiquitin-related modifier 1 OS=Pongo
           abelii GN=SUMO1 PE=3 SV=1
          Length = 101

 Score = 37.7 bits (86), Expect = 0.018
 Identities = 14/26 (53%), Positives = 22/26 (84%)
 Frame = +1

Query: 1   VFDGQRVLEHSTPKDFDMEDEDIIEV 78
           +F+GQR+ ++ TPK+  ME+ED+IEV
Sbjct: 65  LFEGQRIADNHTPKELGMEEEDVIEV 90


>sp|A7WLH8|SUMO1_PIG Small ubiquitin-related modifier 1 OS=Sus
           scrofa GN=SUMO1 PE=3 SV=1
          Length = 101

 Score = 37.7 bits (86), Expect = 0.018
 Identities = 14/26 (53%), Positives = 22/26 (84%)
 Frame = +1

Query: 1   VFDGQRVLEHSTPKDFDMEDEDIIEV 78
           +F+GQR+ ++ TPK+  ME+ED+IEV
Sbjct: 65  LFEGQRIADNHTPKELGMEEEDVIEV 90


>sp|P63166|SUMO1_MOUSE Small ubiquitin-related modifier 1 OS=Mus
           musculus GN=Sumo1 PE=1 SV=1
          Length = 101

 Score = 37.7 bits (86), Expect = 0.018
 Identities = 14/26 (53%), Positives = 22/26 (84%)
 Frame = +1

Query: 1   VFDGQRVLEHSTPKDFDMEDEDIIEV 78
           +F+GQR+ ++ TPK+  ME+ED+IEV
Sbjct: 65  LFEGQRIADNHTPKELGMEEEDVIEV 90
tr_hit_id B6TQW3
Definition tr|B6TQW3|B6TQW3_MAIZE Putative uncharacterized protein OS=Zea mays
Align length 30
Score (bit) 40.8
E-value 0.034
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912287|Adiantum capillus-veneris mRNA, clone:
YMU001_000017_C08.
         (389 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6TQW3|B6TQW3_MAIZE Putative uncharacterized protein OS=Zea m...    41   0.034
tr|B7ZQM3|B7ZQM3_XENLA MGC85025 protein OS=Xenopus laevis GN=MGC...    40   0.045
tr|Q4T9F9|Q4T9F9_TETNG Chromosome undetermined SCAF7577, whole g...    40   0.076
tr|Q4RMW7|Q4RMW7_TETNG Chromosome 3 SCAF15018, whole genome shot...    40   0.076
tr|B5XGQ7|B5XGQ7_SALSA Small ubiquitin-related modifier 1 OS=Sal...    39   0.099
tr|B5DGF5|B5DGF5_SALSA Smt3 suppressor of mif two 3 homolog 1 OS...    39   0.099
tr|Q5KL85|Q5KL85_CRYNE Putative uncharacterized protein OS=Crypt...    39   0.099
tr|A9JTK6|A9JTK6_XENTR LOC100127784 protein OS=Xenopus tropicali...    39   0.13 
tr|A7MCK6|A7MCK6_DANRE SMT3 suppressor of mif two 3 homolog 1 (Y...    39   0.13 
tr|A7RRX5|A7RRX5_NEMVE Predicted protein (Fragment) OS=Nematoste...    39   0.13 
tr|B3SCL3|B3SCL3_TRIAD Putative uncharacterized protein (Fragmen...    38   0.22 
tr|B5FZ54|B5FZ54_TAEGU Putative ubiquitin-like 1 OS=Taeniopygia ...    38   0.29 
tr|Q3YAP2|Q3YAP2_MACMU SMT3 suppressor of mif two 3-like 1 (Frag...    38   0.29 
tr|B0M1N0|B0M1N0_PIG Small ubiquitin-related modifier 1 OS=Sus s...    38   0.29 
tr|A8XLE5|A8XLE5_CAEBR CBR-SMO-1 protein OS=Caenorhabditis brigg...    38   0.29 
tr|B8ZZU4|B8ZZU4_HUMAN Putative uncharacterized protein SUMO1 OS...    38   0.29 
tr|B8ZZ67|B8ZZ67_HUMAN Putative uncharacterized protein SUMO1 OS...    38   0.29 
tr|B2R4I5|B2R4I5_HUMAN cDNA, FLJ92103, Homo sapiens ubiquitin-li...    38   0.29 
tr|A8MUS8|A8MUS8_HUMAN Putative uncharacterized protein SUMO1 (F...    38   0.29 
tr|Q6CUX1|Q6CUX1_KLULA KLLA0C01628p OS=Kluyveromyces lactis GN=K...    38   0.29 
tr|A9T8F4|A9T8F4_PHYPA Predicted protein OS=Physcomitrella paten...    37   0.49 
tr|B6PN66|B6PN66_BRAFL Putative uncharacterized protein (Fragmen...    37   0.49 
tr|B6LBH2|B6LBH2_BRAFL Putative uncharacterized protein OS=Branc...    37   0.49 
tr|Q5BLI6|Q5BLI6_DANRE Nfatc2ip protein (Fragment) OS=Danio reri...    36   0.84 
tr|A8XE43|A8XE43_CAEBR Putative uncharacterized protein OS=Caeno...    36   1.1  
tr|A5JM38|A5JM38_ARTSF SUMO-1-like protein OS=Artemia sanfrancis...    36   1.1  
tr|Q8LCF9|Q8LCF9_ARATH Putative uncharacterized protein (At1g681...    35   1.4  
tr|Q5ZBN3|Q5ZBN3_ORYSJ cDNA clone:002-188-C07, full insert seque...    35   2.4  
tr|Q0JLD4|Q0JLD4_ORYSJ Os01g0607300 protein (Fragment) OS=Oryza ...    35   2.4  
tr|A2ZV89|A2ZV89_ORYSJ Putative uncharacterized protein OS=Oryza...    35   2.4  

>tr|B6TQW3|B6TQW3_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 230

 Score = 40.8 bits (94), Expect = 0.034
 Identities = 17/30 (56%), Positives = 24/30 (80%)
 Frame = +1

Query: 1   VFDGQRVLEHSTPKDFDMEDEDIIEVNIKK 90
           VFDG+++   STP+D D+EDED+IEV  K+
Sbjct: 200 VFDGEKINPSSTPQDLDLEDEDMIEVRRKQ 229


>tr|B7ZQM3|B7ZQM3_XENLA MGC85025 protein OS=Xenopus laevis
           GN=MGC85025 PE=4 SV=1
          Length = 102

 Score = 40.4 bits (93), Expect = 0.045
 Identities = 15/26 (57%), Positives = 22/26 (84%)
 Frame = +1

Query: 1   VFDGQRVLEHSTPKDFDMEDEDIIEV 78
           +F+GQR+ +H TPK+  ME+ED+IEV
Sbjct: 66  LFEGQRISDHQTPKELGMEEEDVIEV 91


>tr|Q4T9F9|Q4T9F9_TETNG Chromosome undetermined SCAF7577, whole
           genome shotgun sequence. (Fragment) OS=Tetraodon
           nigroviridis GN=GSTENG00004767001 PE=4 SV=1
          Length = 97

 Score = 39.7 bits (91), Expect = 0.076
 Identities = 15/26 (57%), Positives = 22/26 (84%)
 Frame = +1

Query: 1   VFDGQRVLEHSTPKDFDMEDEDIIEV 78
           +F+GQR+ ++ TPK+  MEDED+IEV
Sbjct: 65  LFEGQRIADNQTPKELGMEDEDVIEV 90


>tr|Q4RMW7|Q4RMW7_TETNG Chromosome 3 SCAF15018, whole genome shotgun
           sequence. (Fragment) OS=Tetraodon nigroviridis
           GN=GSTENG00031844001 PE=4 SV=1
          Length = 94

 Score = 39.7 bits (91), Expect = 0.076
 Identities = 15/26 (57%), Positives = 22/26 (84%)
 Frame = +1

Query: 1   VFDGQRVLEHSTPKDFDMEDEDIIEV 78
           +F+GQR+ ++ TPK+  MEDED+IEV
Sbjct: 61  LFEGQRIADNQTPKELGMEDEDVIEV 86


>tr|B5XGQ7|B5XGQ7_SALSA Small ubiquitin-related modifier 1 OS=Salmo
           salar GN=SUMO1 PE=2 SV=1
          Length = 127

 Score = 39.3 bits (90), Expect = 0.099
 Identities = 15/26 (57%), Positives = 22/26 (84%)
 Frame = +1

Query: 1   VFDGQRVLEHSTPKDFDMEDEDIIEV 78
           +F+GQR+ ++ TPK+  MEDED+IEV
Sbjct: 91  LFEGQRISDNQTPKELGMEDEDVIEV 116


>tr|B5DGF5|B5DGF5_SALSA Smt3 suppressor of mif two 3 homolog 1
           OS=Salmo salar GN=sumo1 PE=4 SV=1
          Length = 101

 Score = 39.3 bits (90), Expect = 0.099
 Identities = 15/26 (57%), Positives = 22/26 (84%)
 Frame = +1

Query: 1   VFDGQRVLEHSTPKDFDMEDEDIIEV 78
           +F+GQR+ ++ TPK+  MEDED+IEV
Sbjct: 65  LFEGQRISDNQTPKELGMEDEDVIEV 90


>tr|Q5KL85|Q5KL85_CRYNE Putative uncharacterized protein
           OS=Cryptococcus neoformans GN=CNBC6840 PE=4 SV=1
          Length = 101

 Score = 39.3 bits (90), Expect = 0.099
 Identities = 15/30 (50%), Positives = 22/30 (73%)
 Frame = +1

Query: 1   VFDGQRVLEHSTPKDFDMEDEDIIEVNIKK 90
           +FDG R+L+H T  D D+ED D IEV +++
Sbjct: 68  LFDGHRILDHQTANDLDLEDGDAIEVQLEQ 97


>tr|A9JTK6|A9JTK6_XENTR LOC100127784 protein OS=Xenopus tropicalis
           GN=LOC100127784 PE=4 SV=1
          Length = 100

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 15/26 (57%), Positives = 22/26 (84%)
 Frame = +1

Query: 1   VFDGQRVLEHSTPKDFDMEDEDIIEV 78
           +F+GQR+ ++ TPK+  MEDED+IEV
Sbjct: 64  LFEGQRITDNLTPKELGMEDEDVIEV 89


>tr|A7MCK6|A7MCK6_DANRE SMT3 suppressor of mif two 3 homolog 1
           (Yeast) OS=Danio rerio GN=sumo1 PE=4 SV=1
          Length = 100

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 15/26 (57%), Positives = 22/26 (84%)
 Frame = +1

Query: 1   VFDGQRVLEHSTPKDFDMEDEDIIEV 78
           +F+GQR+ ++ TPK+  MEDED+IEV
Sbjct: 64  LFEGQRITDNLTPKELGMEDEDVIEV 89


>tr|A7RRX5|A7RRX5_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g91283 PE=4 SV=1
          Length = 76

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 15/26 (57%), Positives = 21/26 (80%)
 Frame = +1

Query: 1   VFDGQRVLEHSTPKDFDMEDEDIIEV 78
           +FDGQR+ +  TPK  +MED+D+IEV
Sbjct: 43  LFDGQRINDDQTPKQLEMEDDDVIEV 68