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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912289
Clone id YMU001_000017_C10
Library
Length 312
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000017_C10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTCTTCATTCATTGCATCATCCCAATGCACATTTCCAACTGCATCCTCAAAACATGTGGG
CTCCACATCCTGTATCACCTTAGCCATGTAGGCTTGGTGATGCGCTAGATACCCATCATA
AGTCAATTTCTGAACTGGATTTCTGACTCTGTAAGATCTGCGTGGTCCTGGGTCACTCCT
TTGCCGTCTAGCATCTTCTTGTACTTTCCTTACACCAGGTGTCCTGACAGCCGGAATTCC
AAATTCCTCATCAAGACTTTGTTCAGAACCATCTGAATCCATGTCTACATGTGAAAAGAC
TGATGATGCATC
■■Homology search results ■■ -
sp_hit_id Q5ZKN3
Definition sp|Q5ZKN3|PHTF2_CHICK Putative homeodomain transcription factor 2 OS=Gallus gallus
Align length 75
Score (bit) 32.7
E-value 0.57
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912289|Adiantum capillus-veneris mRNA, clone:
YMU001_000017_C10.
         (312 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5ZKN3|PHTF2_CHICK Putative homeodomain transcription factor ...    33   0.57 
sp|Q9UQ35|SRRM2_HUMAN Serine/arginine repetitive matrix protein ...    31   2.2  
sp|A3N3D8|CYSI_ACTP2 Sulfite reductase [NADPH] hemoprotein beta-...    30   2.9  
sp|Q8TXW5|SYT_METKA Threonyl-tRNA synthetase OS=Methanopyrus kan...    30   3.7  
sp|Q8VSR0|CYSI_ACTPL Sulfite reductase [NADPH] hemoprotein beta-...    30   3.7  
sp|Q7NHU4|CINAL_GLOVI CinA-like protein OS=Gloeobacter violaceus...    30   3.7  
sp|P48893|ATP6_ALBCO ATP synthase subunit a OS=Albinaria coerule...    30   3.7  
sp|Q14966|ZN638_HUMAN Zinc finger protein 638 OS=Homo sapiens GN...    30   4.9  
sp|Q17Q06|EIF3C_AEDAE Eukaryotic translation initiation factor 3...    29   6.4  
sp|Q65NA1|MTLD_BACLD Mannitol-1-phosphate 5-dehydrogenase OS=Bac...    29   8.3  
sp|Q64P77|ISPD_BACFR 2-C-methyl-D-erythritol 4-phosphate cytidyl...    29   8.3  
sp|Q62956|ERBB4_RAT Receptor tyrosine-protein kinase erbB-4 OS=R...    29   8.3  
sp|Q8IXL6|DMP4_HUMAN Dentin matrix protein 4 OS=Homo sapiens GN=...    29   8.3  

>sp|Q5ZKN3|PHTF2_CHICK Putative homeodomain transcription factor 2
           OS=Gallus gallus GN=PHTF2 PE=2 SV=1
          Length = 752

 Score = 32.7 bits (73), Expect = 0.57
 Identities = 20/75 (26%), Positives = 35/75 (46%)
 Frame = -1

Query: 279 DSDGSEQSLDEEFGIPAVRTPGVRKVQEDARRQRSDPGPRRSYRVRNPVQKLTYDGYLAH 100
           +S  S  ++ E FG P+      R V   +    S+ GP   Y +R  V++ + DG L +
Sbjct: 269 ESGWSTTTMRETFGTPSHHKETHRTVTNLSDEVSSEEGPETGYSLRRNVERTSSDGTLRN 328

Query: 99  HQAYMAKVIQDVEPT 55
            +++  K    +E T
Sbjct: 329 RKSHHYKKHYPLEDT 343


>sp|Q9UQ35|SRRM2_HUMAN Serine/arginine repetitive matrix protein 2
            OS=Homo sapiens GN=SRRM2 PE=1 SV=2
          Length = 2752

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 18/62 (29%), Positives = 26/62 (41%)
 Frame = -1

Query: 309  ASSVFSHVDMDSDGSEQSLDEEFGIPAVRTPGVRKVQEDARRQRSDPGPRRSYRVRNPVQ 130
            +SS  S     S  S  S       P+   PG + + + A  ++  PG RRS   R P+ 
Sbjct: 2624 SSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPKPASPKKPPPGERRSRSPRKPID 2683

Query: 129  KL 124
             L
Sbjct: 2684 SL 2685


>sp|A3N3D8|CYSI_ACTP2 Sulfite reductase [NADPH] hemoprotein
           beta-component OS=Actinobacillus pleuropneumoniae
           serotype 5b (strain L20) GN=cysI PE=3 SV=1
          Length = 588

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 22/65 (33%), Positives = 30/65 (46%)
 Frame = -1

Query: 216 GVRKVQEDARRQRSDPGPRRSYRVRNPVQKLTYDGYLAHHQAYMAKVIQDVEPTCFEDAV 37
           GV K Q D    RSD   R++ RVR  VQ +T DG+ A  +  M    +   P  F +  
Sbjct: 296 GVVKTQRDFGN-RSD---RKNARVRYTVQNMTLDGFRAEVERCMNIKFEPTRPYEFTERG 351

Query: 36  GNVHW 22
             + W
Sbjct: 352 DRIGW 356


>sp|Q8TXW5|SYT_METKA Threonyl-tRNA synthetase OS=Methanopyrus
           kandleri GN=thrS PE=3 SV=1
          Length = 624

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -1

Query: 261 QSLDEEFGIPAVRTPGVRKVQEDARRQRSDPGPRRSYRVR 142
           ++L  + G   V TP +  + EDA R+ +D    R YR+R
Sbjct: 237 ENLMADLGAAVVETPVMYDLSEDAIREHADKFGERQYRIR 276


>sp|Q8VSR0|CYSI_ACTPL Sulfite reductase [NADPH] hemoprotein
           beta-component OS=Actinobacillus pleuropneumoniae
           GN=cysI PE=3 SV=1
          Length = 588

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 21/65 (32%), Positives = 30/65 (46%)
 Frame = -1

Query: 216 GVRKVQEDARRQRSDPGPRRSYRVRNPVQKLTYDGYLAHHQAYMAKVIQDVEPTCFEDAV 37
           GV K Q D    RSD   R++ RVR  +Q +T DG+ A  +  M    +   P  F +  
Sbjct: 296 GVVKTQRDFGN-RSD---RKNARVRYTIQNMTLDGFRAEVERCMNIKFEPTRPYEFTERG 351

Query: 36  GNVHW 22
             + W
Sbjct: 352 DRIGW 356


>sp|Q7NHU4|CINAL_GLOVI CinA-like protein OS=Gloeobacter violaceus
           GN=glr2441 PE=3 SV=1
          Length = 426

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -1

Query: 279 DSDGSEQSLDEEFGIPAVRTPGVRKVQEDARRQRSDP 169
           D D + Q+L E F +P VR P +  + E+  R+R+ P
Sbjct: 75  DDDLTHQTLAEHFEVPLVRHPALLALIEERFRERNRP 111


>sp|P48893|ATP6_ALBCO ATP synthase subunit a OS=Albinaria coerulea
           GN=ATP6 PE=3 SV=1
          Length = 214

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 145 DSVRSAWSWVTPLPSSIFLYFPYTRCPDSRN 237
           D + S WSW+TP+  S+F+ +  T   D  N
Sbjct: 10  DGMTSLWSWLTPMFLSVFMIWNKTWSMDQNN 40


>sp|Q14966|ZN638_HUMAN Zinc finger protein 638 OS=Homo sapiens
           GN=ZNF638 PE=1 SV=2
          Length = 1978

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -1

Query: 237 IPAVRTPGVRKVQEDARRQRSDPGPRRSYR 148
           +P+ R  G RK  E  RR+   P PRRS R
Sbjct: 469 LPSRRNEGNRKENETPRRRSHSPSPRRSRR 498


>sp|Q17Q06|EIF3C_AEDAE Eukaryotic translation initiation factor 3
           subunit C OS=Aedes aegypti GN=eIF3-S8 PE=3 SV=1
          Length = 910

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 285 DMDSDGSEQSLDEEFGIPAVRTPGVRKVQED 193
           DMDSD  E S DEE    ++R   ++K ++D
Sbjct: 218 DMDSDSDESSSDEETQYTSIRERFLKKAEKD 248


>sp|Q65NA1|MTLD_BACLD Mannitol-1-phosphate 5-dehydrogenase
           OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580)
           GN=mtlD PE=3 SV=1
          Length = 379

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -1

Query: 123 TYDGYLAHHQAYMAKVIQDVEPTCFEDAVGNV 28
           TYD     H+AYM K+I   E  C  D V  V
Sbjct: 261 TYDFTQEEHRAYMTKIIGRFENECLSDDVTRV 292
tr_hit_id Q0KIU3
Definition tr|Q0KIU3|Q0KIU3_SOLDE Integrase core domain containing protein OS=Solanum demissum
Align length 100
Score (bit) 42.7
E-value 0.009
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912289|Adiantum capillus-veneris mRNA, clone:
YMU001_000017_C10.
         (312 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q0KIU3|Q0KIU3_SOLDE Integrase core domain containing protein ...    43   0.009
tr|A5ART6|A5ART6_VITVI Putative uncharacterized protein OS=Vitis...    43   0.009
tr|A5AIJ8|A5AIJ8_VITVI Putative uncharacterized protein OS=Vitis...    43   0.009
tr|A5BEI8|A5BEI8_VITVI Putative uncharacterized protein OS=Vitis...    41   0.026
tr|A5BLV0|A5BLV0_VITVI Putative uncharacterized protein OS=Vitis...    41   0.034
tr|Q8L700|Q8L700_ARATH Putative uncharacterized protein (Putativ...    39   0.099
tr|O22175|O22175_ARATH Putative retroelement pol polyprotein OS=...    39   0.099
tr|Q9FL75|Q9FL75_ARATH Retroelement pol polyprotein-like OS=Arab...    36   1.1  
tr|O65452|O65452_ARATH LTR retrotransposon like protein OS=Arabi...    36   1.1  
tr|B2WAZ0|B2WAZ0_PYRTR Putative uncharacterized protein OS=Pyren...    36   1.1  
tr|O81903|O81903_ARATH Putative transposable element OS=Arabidop...    35   1.4  
tr|Q01J50|Q01J50_ORYSA OSIGBa0145M07.7 protein OS=Oryza sativa G...    35   2.5  
tr|A5ARV9|A5ARV9_VITVI Putative uncharacterized protein OS=Vitis...    35   2.5  
tr|Q5NQQ5|Q5NQQ5_ZYMMO Putative uncharacterized protein OS=Zymom...    34   3.2  
tr|Q9RNJ6|Q9RNJ6_ZYMMO Putative uncharacterized protein OS=Zymom...    34   3.2  
tr|A5BZM8|A5BZM8_VITVI Putative uncharacterized protein OS=Vitis...    34   3.2  
tr|Q9ZPU4|Q9ZPU4_ARATH Putative retroelement pol polyprotein OS=...    34   4.2  
tr|Q7S1T6|Q7S1T6_NEUCR Putative uncharacterized protein OS=Neuro...    34   4.2  
tr|B3M006|B3M006_DROAN GF18861 OS=Drosophila ananassae GN=GF1886...    33   5.5  
tr|Q0CJH0|Q0CJH0_ASPTN Predicted protein OS=Aspergillus terreus ...    33   5.5  
tr|A5C540|A5C540_VITVI Putative uncharacterized protein OS=Vitis...    33   9.3  
tr|A5BNR5|A5BNR5_VITVI Putative uncharacterized protein OS=Vitis...    33   9.3  
tr|A5BDR0|A5BDR0_VITVI Putative uncharacterized protein OS=Vitis...    33   9.3  
tr|B0S6K9|B0S6K9_DANRE Novel protein similar to vertebrate IQ mo...    33   9.3  

>tr|Q0KIU3|Q0KIU3_SOLDE Integrase core domain containing protein
           OS=Solanum demissum GN=SDM1_25t00011 PE=4 SV=1
          Length = 716

 Score = 42.7 bits (99), Expect = 0.009
 Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 8/100 (8%)
 Frame = -1

Query: 276 SDGSEQSLDEEFGIPAVRTPGVRKVQEDARRQRSDPGPRRSYRVRNPVQKLTYD-----G 112
           S  ++ S+D+   +P   T   RK    + R    P   + Y  +      TY      G
Sbjct: 612 STDTDVSIDDNVSLPTSPTTQTRK----STRHFKPPTWMQDYVCKPTAHTCTYSLSVVLG 667

Query: 111 YLA---HHQAYMAKVIQDVEPTCFEDAVGNVHWDDAMNEE 1
           Y +    +QAY+AK+  D EPT F++AV +  W +AM  E
Sbjct: 668 YSSLSPKYQAYIAKMFTDSEPTSFKEAVKDPRWIEAMQSE 707


>tr|A5ART6|A5ART6_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_028058 PE=4 SV=1
          Length = 1125

 Score = 42.7 bits (99), Expect = 0.009
 Identities = 16/42 (38%), Positives = 26/42 (61%)
 Frame = -1

Query: 126 LTYDGYLAHHQAYMAKVIQDVEPTCFEDAVGNVHWDDAMNEE 1
           ++Y  Y   H+++ A V QD+EPT + +A  + HW +AM  E
Sbjct: 608 VSYHRYSPQHRSFTAAVSQDIEPTSYAEATSHSHWQEAMQSE 649


>tr|A5AIJ8|A5AIJ8_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_031733 PE=4 SV=1
          Length = 1322

 Score = 42.7 bits (99), Expect = 0.009
 Identities = 16/42 (38%), Positives = 26/42 (61%)
 Frame = -1

Query: 126 LTYDGYLAHHQAYMAKVIQDVEPTCFEDAVGNVHWDDAMNEE 1
           ++Y  Y   H+++ A V QD+EPT + +A  + HW +AM  E
Sbjct: 813 VSYHRYSPQHRSFTAAVSQDIEPTSYAEAASHSHWQEAMQSE 854


>tr|A5BEI8|A5BEI8_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_043423 PE=4 SV=1
          Length = 1059

 Score = 41.2 bits (95), Expect = 0.026
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = -1

Query: 126  LTYDGYLAHHQAYMAKVIQDVEPTCFEDAVGNVHWDDAMNEE 1
            ++Y  Y   H+++   V QD+EPT + +A  + HW +AM  E
Sbjct: 905  VSYHHYSPQHRSFTTAVSQDIEPTSYAEAASHSHWQEAMQSE 946


>tr|A5BLV0|A5BLV0_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_033389 PE=4 SV=1
          Length = 1279

 Score = 40.8 bits (94), Expect = 0.034
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = -1

Query: 126 LTYDGYLAHHQAYMAKVIQDVEPTCFEDAVGNVHWDDAMNEE 1
           ++Y  Y   H+++ A V QD+EPT + +   + HW +AM  E
Sbjct: 790 VSYHRYSPQHRSFTAAVSQDIEPTSYAEXASHSHWQEAMQSE 831


>tr|Q8L700|Q8L700_ARATH Putative uncharacterized protein (Putative
           retroelement pol polyprotein) (At2g23330) OS=Arabidopsis
           thaliana GN=At2g23330 PE=2 SV=1
          Length = 776

 Score = 39.3 bits (90), Expect = 0.099
 Identities = 18/42 (42%), Positives = 27/42 (64%)
 Frame = -1

Query: 126 LTYDGYLAHHQAYMAKVIQDVEPTCFEDAVGNVHWDDAMNEE 1
           LT  GY A+H A+MA ++   EP  F+DA+    W +AM++E
Sbjct: 245 LTNSGYSANHIAFMAAILDSNEPKHFKDAILIKEWCEAMSKE 286


>tr|O22175|O22175_ARATH Putative retroelement pol polyprotein
            OS=Arabidopsis thaliana GN=At2g23330 PE=2 SV=1
          Length = 1496

 Score = 39.3 bits (90), Expect = 0.099
 Identities = 18/42 (42%), Positives = 27/42 (64%)
 Frame = -1

Query: 126  LTYDGYLAHHQAYMAKVIQDVEPTCFEDAVGNVHWDDAMNEE 1
            LT  GY A+H A+MA ++   EP  F+DA+    W +AM++E
Sbjct: 965  LTNSGYSANHIAFMAAILDSNEPKHFKDAILIKEWCEAMSKE 1006


>tr|Q9FL75|Q9FL75_ARATH Retroelement pol polyprotein-like
           OS=Arabidopsis thaliana PE=4 SV=1
          Length = 1109

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 14/46 (30%), Positives = 29/46 (63%)
 Frame = -1

Query: 138 PVQKLTYDGYLAHHQAYMAKVIQDVEPTCFEDAVGNVHWDDAMNEE 1
           P  K++ + + + H+A++A V   +EPT + +A+ +  W +AM+ E
Sbjct: 574 PYSKMSCNRFTSSHKAFLAAVTAGMEPTTYNEAMVDKAWREAMSAE 619


>tr|O65452|O65452_ARATH LTR retrotransposon like protein
           OS=Arabidopsis thaliana GN=AT4g22040 PE=2 SV=1
          Length = 1109

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 14/46 (30%), Positives = 29/46 (63%)
 Frame = -1

Query: 138 PVQKLTYDGYLAHHQAYMAKVIQDVEPTCFEDAVGNVHWDDAMNEE 1
           P  K++ + + + H+A++A V   +EPT + +A+ +  W +AM+ E
Sbjct: 574 PYSKMSCNRFTSSHKAFLAAVTAGMEPTTYNEAMVDKAWREAMSAE 619


>tr|B2WAZ0|B2WAZ0_PYRTR Putative uncharacterized protein
           OS=Pyrenophora tritici-repentis (strain Pt-1C-BFP)
           GN=PTRG_07453 PE=4 SV=1
          Length = 368

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = -1

Query: 261 QSLDEEFGIPAVRTPGVRKVQEDARRQRSDPGPRRSYRVRNPVQKLTYDGYLAHHQAYMA 82
           Q+LD   G+ + +   V  +   A +   +   +  Y   NPV    Y+G +A+  AY A
Sbjct: 189 QTLDATCGVDSAQCKTV--MDGFALQLLQENACKSDYNSDNPVVLQAYNGLIAYQPAYKA 246

Query: 81  KVIQDVEPT-CFEDAVGNV 28
             + D E   CF DAV N+
Sbjct: 247 SCLHDKEGNYCFADAVSNM 265