BP912291 |
Clone id |
YMU001_000017_D01 |
Library |
YMU01 |
Length |
558 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000017_D01. |
Accession |
BP912291 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL10Contig1 |
Sequence |
AGACCATCTAGGGGTAAAGCACCGTTCCGGTGCGGGCTGCGAGAGCGGTACCAAATCGAG GCAAACTCTGAATACTAGATGTAACGTTCAAGTAAAAGGAACGAAGGAAAAGGGTCAACC AGTGAGACGATGAGGGATAAGCTTCACCGTCGAGAGGGGAACAGCCCAGATCACCAGCTA AGGCCCCTAAATGACCGCTCAGTGGTAAAGGAGGTAGGAGTGCAAAGACAGCCAGGAGGT TTGCCTAGAAGCAGCCACCCTTGAAAGAGTGCGTAATAGCTCACTGATCCAGCGCTCTTG CGCCGAAGATGAGCGGGACTAAGCGGTCTGCCGAAGCTGTGGGATGTCAAAAAACATCGG TAGGGGAGCGTTCCGCCCCAGATGGAAGCACCAGTGCGAGCAGGTGTGGACGAAGCGGAA GCGAGAATGTCGGCTTGAGTAACGAAAACATTGGTGAGAATCCAATGCCCCGAAAACCTA AGGGTTCCTCCACAAGGTTCGTCCACGGAGGGTGAGTCAGGTCCTAAGATCAGGCCGAGA GGCGTAGTTGATGGACAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q80WV7 |
Definition |
sp|Q80WV7|SRR2L_MOUSE SRRM2-like protein OS=Mus musculus |
Align length |
119 |
Score (bit) |
34.3 |
E-value |
0.42 |
Report |
 |
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A6N1H4 |
Definition |
tr|A6N1H4|A6N1H4_ORYSI Retrotransposon protein OS=Oryza sativa subsp. indica |
Align length |
56 |
Score (bit) |
103.0 |
E-value |
4.0e-30 |
Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP912291|Adiantum capillus-veneris mRNA, clone: YMU001_000017_D01. (558 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A6N1H4|A6N1H4_ORYSI Retrotransposon protein OS=Oryza sativa s... 103 4e-30 tr|B7FGU0|B7FGU0_MEDTR Putative uncharacterized protein OS=Medic... 97 2e-27 tr|Q9RXQ4|Q9RXQ4_DEIRA Putative uncharacterized protein OS=Deino... 111 3e-23 tr|Q9RS75|Q9RS75_DEIRA Putative uncharacterized protein OS=Deino... 111 3e-23 tr|A1IW39|A1IW39_9LAMI Putative uncharacterized protein ophh-69 ... 102 2e-20 tr|B3D9S7|B3D9S7_BURM1 Putative uncharacterized protein OS=Burkh... 85 2e-15 tr|A7QYC6|A7QYC6_VITVI Chromosome undetermined scaffold_244, who... 67 5e-10 tr|Q5M9Z9|Q5M9Z9_TOBAC Putative uncharacterized protein orf106b ... 61 5e-08 tr|Q0JIM3|Q0JIM3_ORYSJ Photosystem I P700 chlorophyll A apoprote... 56 1e-06 tr|B1N6J8|B1N6J8_9PROT Putative uncharacterized protein OS=uncul... 54 6e-06 tr|A9PE47|A9PE47_POPTR Putative uncharacterized protein OS=Popul... 51 4e-05 tr|A1XNB2|A1XNB2_VICSA Putative cysteine synthase Voas-tl5 OS=Vi... 49 1e-04 tr|B0MGK2|B0MGK2_9FIRM Putative uncharacterized protein OS=Anaer... 38 4e-04 tr|Q0MX19|Q0MX19_ARAHY Leucine rich protein OS=Arachis hypogaea ... 40 0.001 tr|B0TIE5|B0TIE5_HELMI Putative uncharacterized protein OS=Helio... 46 0.001 tr|Q6AV58|Q6AV58_ORYSJ Putative uncharacterized protein OSJNBb01... 37 0.001 tr|A8R9P7|A8R9P7_9FIRM Putative uncharacterized protein OS=Eubac... 46 0.002 tr|A7PNG2|A7PNG2_VITVI Chromosome chr1 scaffold_22, whole genome... 44 0.006 tr|Q85WT3|Q85WT3_PINKO ORF46f OS=Pinus koraiensis PE=4 SV=1 44 0.006 tr|A7QCF1|A7QCF1_VITVI Chromosome undetermined scaffold_77, whol... 44 0.008 tr|B7R8W2|B7R8W2_9THEO Putative uncharacterized protein OS=Carbo... 43 0.010 tr|B0PCK9|B0PCK9_9FIRM Putative uncharacterized protein OS=Anaer... 41 0.038 tr|B0PBI2|B0PBI2_9FIRM Putative uncharacterized protein OS=Anaer... 41 0.038 tr|B0P654|B0P654_9FIRM Putative uncharacterized protein OS=Anaer... 41 0.038 tr|A1HM07|A1HM07_9FIRM Putative uncharacterized protein OS=Therm... 41 0.038 tr|A8R9Q0|A8R9Q0_9FIRM Putative uncharacterized protein OS=Eubac... 41 0.050 tr|A5Z498|A5Z498_9FIRM Putative uncharacterized protein OS=Eubac... 39 0.14 tr|A7QEC9|A7QEC9_VITVI Chromosome chr1 scaffold_84, whole genome... 38 0.33 tr|B0MI56|B0MI56_9FIRM Putative uncharacterized protein (Fragmen... 35 0.45 tr|A8LKH8|A8LKH8_DINSH H+transporting two-sector ATPase B/B' sub... 37 0.72
>tr|A6N1H4|A6N1H4_ORYSI Retrotransposon protein OS=Oryza sativa subsp. indica PE=4 SV=1 Length = 109
Score = 103 bits (257), Expect(2) = 4e-30 Identities = 50/56 (89%), Positives = 51/56 (91%) Frame = +1
Query: 106 GKGSTSETMRDKLHRREGNSPDHQLRPLNDRSVVKEVGVQRQPGGLPRSSHP*KSA 273 G S SETM DKLHRREGNSPDHQLRPLNDRSV+KEVGVQRQPGGLPRSSHP KSA Sbjct: 54 GVRSASETMGDKLHRREGNSPDHQLRPLNDRSVIKEVGVQRQPGGLPRSSHPLKSA 109
Score = 51.6 bits (122), Expect(2) = 4e-30 Identities = 23/38 (60%), Positives = 28/38 (73%) Frame = +2
Query: 5 HLGVKHRSGAGCESGTKSRQTLNTRCNVQVKGTKEKGQ 118 HLGVKH GAGC SGTKSRQTLNTR + ++ G + + Sbjct: 23 HLGVKHCFGAGCASGTKSRQTLNTRYDPKITGVRSASE 60
>tr|B7FGU0|B7FGU0_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=4 SV=1 Length = 102
Score = 97.4 bits (241), Expect(2) = 2e-27 Identities = 45/49 (91%), Positives = 46/49 (93%) Frame = +1
Query: 115 STSETMRDKLHRREGNSPDHQLRPLNDRSVVKEVGVQRQPGGLPRSSHP 261 S SE M DKLHRREGNSPDHQLRPLNDRSV+KEVGVQRQPGGLPRSSHP Sbjct: 54 SASEAMGDKLHRREGNSPDHQLRPLNDRSVIKEVGVQRQPGGLPRSSHP 102
Score = 48.9 bits (115), Expect(2) = 2e-27 Identities = 25/35 (71%), Positives = 26/35 (74%) Frame = +2
Query: 5 HLGVKHRSGAGCESGTKSRQTLNTRCNVQVKGTKE 109 HLGVKH GAG ESGTKSRQTLNTR +VK E Sbjct: 23 HLGVKHCFGAGRESGTKSRQTLNTRYPWRVKSASE 57
>tr|Q9RXQ4|Q9RXQ4_DEIRA Putative uncharacterized protein OS=Deinococcus radiodurans GN=DR_0254 PE=4 SV=1 Length = 139
Score = 111 bits (277), Expect = 3e-23 Identities = 66/130 (50%), Positives = 73/130 (56%), Gaps = 3/130 (2%) Frame = -2
Query: 557 CPSTTPLGLILGPDSPSVDEPCGGTLRFSGHWILTNVFVTQADILASASSTPARTGASIW 378 CPS P GL LGPD P D+P GTL + ILT+ VT A I S ST AS Sbjct: 10 CPSAAPFGLTLGPDFPWADDPSPGTLVLTAKKILTSFIVTHAGIRTSVGSTTPSGMASPR 69
Query: 377 GGTLPYRCFLT---SHSFGRPLSPAHLRRKSAGSVSYYALFQGWLLLGKPPGCLCTPTSF 207 P R + S + LSP H RR VSYYALF+GWLLL +PPGCLC TS Sbjct: 70 TERSPTRQLASRVESIASVDHLSPDHFRRIVTRPVSYYALFEGWLLLSQPPGCLCDDTSL 129
Query: 206 TTERSFRGLS 177 TTERSFR LS Sbjct: 130 TTERSFRDLS 139
>tr|Q9RS75|Q9RS75_DEIRA Putative uncharacterized protein OS=Deinococcus radiodurans GN=DR_2252 PE=4 SV=1 Length = 133
Score = 111 bits (277), Expect = 3e-23 Identities = 66/130 (50%), Positives = 73/130 (56%), Gaps = 3/130 (2%) Frame = -2
Query: 557 CPSTTPLGLILGPDSPSVDEPCGGTLRFSGHWILTNVFVTQADILASASSTPARTGASIW 378 CPS P GL LGPD P D+P GTL + ILT+ VT A I S ST AS Sbjct: 4 CPSAAPFGLTLGPDFPWADDPSPGTLVLTAKKILTSFIVTHAGIRTSVGSTTPSGMASPR 63
Query: 377 GGTLPYRCFLT---SHSFGRPLSPAHLRRKSAGSVSYYALFQGWLLLGKPPGCLCTPTSF 207 P R + S + LSP H RR VSYYALF+GWLLL +PPGCLC TS Sbjct: 64 TERSPTRQLASRVESIASVDHLSPDHFRRIVTRPVSYYALFEGWLLLSQPPGCLCDDTSL 123
Query: 206 TTERSFRGLS 177 TTERSFR LS Sbjct: 124 TTERSFRDLS 133
>tr|A1IW39|A1IW39_9LAMI Putative uncharacterized protein ophh-69 (Fragment) OS=Phillyrea latifolia GN=ophh-69 PE=2 SV=1 Length = 166
Score = 102 bits (253), Expect = 2e-20 Identities = 50/67 (74%), Positives = 54/67 (80%) Frame = +3
Query: 312 SGTKRSAEAVGCQKTSVGERSAPDGSTSASRCGRSGSENVGLSNENIGENPMPRKPKGSS 491 +G + AVGC+ TSVGERSA +GS AS GRSGSENVGLSN NIGENPMPRKPKGSS Sbjct: 100 AGDVQGCRAVGCKNTSVGERSALEGSPRASSGGRSGSENVGLSNANIGENPMPRKPKGSS 159
Query: 492 TRFVHGG 512 RFVHGG Sbjct: 160 ARFVHGG 166
Score = 97.8 bits (242), Expect = 3e-19 Identities = 49/63 (77%), Positives = 52/63 (82%) Frame = +3
Query: 336 AVGCQKTSVGERSAPDGSTSASRCGRSGSENVGLSNENIGENPMPRKPKGSSTRFVHGG* 515 AVGC+ TSVGERSA +GS S GRSGSENVGLSN NIGENPMPRKPKGSS FVHGG Sbjct: 3 AVGCKNTSVGERSALEGSPRVSSGGRSGSENVGLSNANIGENPMPRKPKGSSAWFVHGGS 62
Query: 516 VRS 524 VR+ Sbjct: 63 VRA 65
>tr|B3D9S7|B3D9S7_BURM1 Putative uncharacterized protein OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=BMULJ_05092 PE=4 SV=1 Length = 123
Score = 85.1 bits (209), Expect = 2e-15 Identities = 51/119 (42%), Positives = 60/119 (50%), Gaps = 1/119 (0%) Frame = -2
Query: 554 PSTTPLGLILGPDSPSVDEPCGGTLRFSGHWILTNVFVTQADILASASSTPARTGASIWG 375 PS T L LG DSP DE C G L + T T I S +S+ S Sbjct: 5 PSATHFCLALGADSPYADERCVGNLGLTARGPFTPFIATHVSIRTSDTSSTLYKAPSQAY 64
Query: 374 GTLPYR-CFLTSHSFGRPLSPAHLRRKSAGSVSYYALFQGWLLLGKPPGCLCTPTSFTT 201 GTL Y C S + L+P HL R++ SVSYYA F+GWLLL +PP C PTSF T Sbjct: 65 GTLSYHACKHASAASVYGLAPLHLPRRTTRSVSYYAFFKGWLLLSQPPDCFSLPTSFPT 123
>tr|A7QYC6|A7QYC6_VITVI Chromosome undetermined scaffold_244, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00009678001 PE=4 SV=1 Length = 114
Score = 67.4 bits (163), Expect = 5e-10 Identities = 40/79 (50%), Positives = 46/79 (58%) Frame = +3
Query: 276 IAH*SSALAPKMSGTKRSAEAVGCQKTSVGERSAPDGSTSASRCGRSGSENVGLSNENIG 455 I H ++ PK+ K + SVGERSA +GST ASR + N NIG Sbjct: 46 INHRGFSILPKLWDVKS-------KNASVGERSALEGSTRASRRVDEAEARI---NANIG 95
Query: 456 ENPMPRKPKGSSTRFVHGG 512 ENPMPRKPKGSS RFVHGG Sbjct: 96 ENPMPRKPKGSSARFVHGG 114
>tr|Q5M9Z9|Q5M9Z9_TOBAC Putative uncharacterized protein orf106b OS=Nicotiana tabacum GN=orf106b PE=4 SV=1 Length = 106
Score = 60.8 bits (146), Expect = 5e-08 Identities = 31/47 (65%), Positives = 35/47 (74%) Frame = -1
Query: 147 VKLIPHRLTG*PFSFVPFT*TLHLVFRVCLDLVPLSQPAPERCFTPR 7 +KLIPHRLT P P +LVFRVCLDLVPLS+PAP+ CFTPR Sbjct: 1 MKLIPHRLTSRPCP--PLILRSYLVFRVCLDLVPLSRPAPKPCFTPR 45
>tr|Q0JIM3|Q0JIM3_ORYSJ Photosystem I P700 chlorophyll A apoprotein OS=Oryza sativa subsp. japonica GN=Os01g0790900 PE=3 SV=1 Length = 1546
Score = 56.2 bits (134), Expect = 1e-06 Identities = 25/31 (80%), Positives = 26/31 (83%) Frame = -2
Query: 377 GGTLPYRCFLTSHSFGRPLSPAHLRRKSAGS 285 GGTLPYRC LTSHSFGR LSP HL+RK A S Sbjct: 603 GGTLPYRCILTSHSFGRSLSPVHLQRKGARS 633
>tr|B1N6J8|B1N6J8_9PROT Putative uncharacterized protein OS=uncultured beta proteobacterium CBNPD1 BAC clone 578 PE=4 SV=1 Length = 109
Score = 53.9 bits (128), Expect = 6e-06 Identities = 37/99 (37%), Positives = 46/99 (46%), Gaps = 1/99 (1%) Frame = -2
Query: 554 PSTTPLGLILGPDSPSVDEPCGGTLRFSGHWILTNVFVTQADILASASSTPARTGASIWG 375 PS T L L LG DSP DE C G L + + T T I S +S+ S Sbjct: 11 PSATHLCLALGADSPYADERCVGNLALTARGLFTPFNATHVSIRTSDTSSRLHNPPSQAY 70
Query: 374 GTLPYRCF-LTSHSFGRPLSPAHLRRKSAGSVSYYALFQ 261 TL Y S + L+P HL R++ SVSYYA F+ Sbjct: 71 RTLSYHAHCCASAASVTGLAPLHLPRRTTRSVSYYAFFK 109
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