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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912292
Clone id YMU001_000017_D02
Library
Length 426
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000017_D02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TATCCAAAAAAAAAACATCTCAGTATCAGGCCATATTAGGGAAAGAAGGTCCTGATTAAT
GTTACAGTATAAGTGTACAACATTTCATCTTGTCAAATAGCAGCCACCTTTAGCTTGTGC
AAGAATGATGTAACTTTGTCCATGATTCCTCGAGTCCCTGGTTCAAAATCCAGACCTGGG
GGCCCTTTCCAAGTGTGGAAGGACTACACACAAACACTTGTGAAGGTGCATGCATGTAGT
TTCTTATTGAAAATTGTGAAGTGTCTTGTCTCCCAAGTGCAATCTTGGATGAGGGTACAT
CTGATATGGCATGCCGGTCCCATGAGCAACAAGTGGAGAGAGGCAATGTAAGGGGCAATG
GGGTGCGTGGCTGATAGCTTGAAAACCCATCAAAAGTCGAAGCATAATGGGATGGGGGTG
GCTCGG
■■Homology search results ■■ -
sp_hit_id P07932
Definition sp|P07932|VGG_BPS13 Major spike protein OS=Enterobacteria phage S13
Align length 50
Score (bit) 32.0
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912292|Adiantum capillus-veneris mRNA, clone:
YMU001_000017_D02.
         (426 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P07932|VGG_BPS13 Major spike protein OS=Enterobacteria phage ...    32   1.1  
sp|P03643|VGG_BPPHX Major spike protein OS=Enterobacteria phage ...    30   5.3  
sp|O35889|AFAD_RAT Afadin OS=Rattus norvegicus GN=Mllt4 PE=1 SV=1      29   8.8  
sp|Q5ZW98|KUP1_LEGPH Probable potassium transport system protein...    29   9.1  
sp|A5IB85|KUP1_LEGPC Probable potassium transport system protein...    29   9.1  
sp|Q5X5Y0|KUP1_LEGPA Probable potassium transport system protein...    29   9.1  
sp|P23622|CYS14_NEUCR Sulfate permease 2 OS=Neurospora crassa GN...    29   9.1  

>sp|P07932|VGG_BPS13 Major spike protein OS=Enterobacteria phage S13
           GN=G PE=3 SV=1
          Length = 175

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
 Frame = +1

Query: 121 KNDVTLSMIPRVPGSKSRPGGPFQVWKDYTQTLVK-VHACSFLLKIVKCL 267
           K+ VT+ ++PR PG+    G  F VW ++T T  + + + + ++K++ CL
Sbjct: 124 KDCVTIDVLPRTPGNNVYVG--FMVWSNFTATKCRGLVSLNQVIKVIICL 171


>sp|P03643|VGG_BPPHX Major spike protein OS=Enterobacteria phage
           phiX174 GN=G PE=1 SV=1
          Length = 175

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +1

Query: 121 KNDVTLSMIPRVPGSKSRPGGPFQVWKDYTQTLVK-VHACSFLLKIVKCL 267
           K+ VT+ ++PR PG+    G  F VW ++T T  + + + + ++K + CL
Sbjct: 124 KDCVTIDVLPRTPGNNVYVG--FMVWSNFTATKCRGLVSLNQVIKEIICL 171


>sp|O35889|AFAD_RAT Afadin OS=Rattus norvegicus GN=Mllt4 PE=1 SV=1
          Length = 1829

 Score = 28.9 bits (63), Expect = 8.8
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -3

Query: 421  PPPSHYASTFDGFSSYQP 368
            PPP+HY S FDG S   P
Sbjct: 1377 PPPAHYTSDFDGISMDLP 1394


>sp|Q5ZW98|KUP1_LEGPH Probable potassium transport system protein
           kup 1 OS=Legionella pneumophila subsp. pneumophila
           (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=kup1
           PE=3 SV=2
          Length = 624

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 49  VLINVTV*VYNISSCQIAATFSLCKNDVTLSMIPRVP 159
           ++I  TV     S   I+ATFSL K  V L + P++P
Sbjct: 283 LIIIATVATVIASQAVISATFSLTKQAVLLGLCPKIP 319


>sp|A5IB85|KUP1_LEGPC Probable potassium transport system protein
           kup 1 OS=Legionella pneumophila (strain Corby) GN=kup1
           PE=3 SV=1
          Length = 631

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 49  VLINVTV*VYNISSCQIAATFSLCKNDVTLSMIPRVP 159
           ++I  TV     S   I+ATFSL K  V L + P++P
Sbjct: 290 LIIIATVATVIASQAVISATFSLTKQAVLLGLCPKIP 326


>sp|Q5X5Y0|KUP1_LEGPA Probable potassium transport system protein
           kup 1 OS=Legionella pneumophila (strain Paris) GN=kup1
           PE=3 SV=1
          Length = 624

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 49  VLINVTV*VYNISSCQIAATFSLCKNDVTLSMIPRVP 159
           ++I  TV     S   I+ATFSL K  V L + P++P
Sbjct: 283 LIIIATVATVIASQAVISATFSLTKQAVLLGLCPKIP 319


>sp|P23622|CYS14_NEUCR Sulfate permease 2 OS=Neurospora crassa
           GN=cys-14 PE=2 SV=3
          Length = 819

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 307 WHAGPMSNKWREAM*GAMGCVADSLKTHQKSKHNGMG 417
           WH   +SN+W +    A G   DSL+T +  + N  G
Sbjct: 667 WHFAGVSNRWTKRALVASGFGVDSLRTAKVQRENHKG 703
tr_hit_id Q8SCA0
Definition tr|Q8SCA0|Q8SCA0_9CAUD Putative uncharacterized protein OS=Stx2 converting phage I
Align length 54
Score (bit) 35.8
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912292|Adiantum capillus-veneris mRNA, clone:
YMU001_000017_D02.
         (426 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q8SCA0|Q8SCA0_9CAUD Putative uncharacterized protein OS=Stx2 ...    36   1.1  
tr|Q7Y3B8|Q7Y3B8_9CAUD Putative uncharacterized protein OS=Stx1 ...    36   1.1  
tr|Q7Y2V7|Q7Y2V7_9CAUD Putative uncharacterized protein OS=Stx2 ...    36   1.1  
tr|A4I2I2|A4I2I2_LEIIN Putative uncharacterized protein OS=Leish...    35   2.5  
tr|B0X4Z2|B0X4Z2_CULQU Zinc finger protein 558 OS=Culex quinquef...    34   3.2  
tr|B4LQ04|B4LQ04_DROVI GJ20920 OS=Drosophila virilis GN=GJ20920 ...    27   3.2  
tr|A7BYI8|A7BYI8_9GAMM Putative uncharacterized protein OS=Beggi...    34   4.1  
tr|B4GDI0|B4GDI0_DROPE GL10350 OS=Drosophila persimilis GN=GL103...    28   6.9  
tr|Q28YG0|Q28YG0_DROPS GA14100 OS=Drosophila pseudoobscura pseud...    28   6.9  
tr|B4MUZ4|B4MUZ4_DROWI GK15405 OS=Drosophila willistoni GN=GK154...    33   7.2  
tr|Q9BWR0|Q9BWR0_HUMAN Intercellular adhesion molecule 4 (Landst...    33   7.2  
tr|B3DMK7|B3DMK7_DROME AT27922p (Fragment) OS=Drosophila melanog...    27   8.9  
tr|B4HPQ6|B4HPQ6_DROSE GM21973 OS=Drosophila sechellia GN=GM2197...    27   8.9  
tr|A1ZBN5|A1ZBN5_DROME CG16716 OS=Drosophila melanogaster GN=CG1...    27   8.9  
tr|B4QE47|B4QE47_DROSI GD11467 (Fragment) OS=Drosophila simulans...    27   9.0  
tr|Q8T420|Q8T420_DROME AT21729p OS=Drosophila melanogaster GN=CG...    27   9.0  
tr|Q29BC6|Q29BC6_DROPS GA15930 OS=Drosophila pseudoobscura pseud...    33   9.4  
tr|B4GNS0|B4GNS0_DROPE GL13744 OS=Drosophila persimilis GN=GL137...    33   9.4  

>tr|Q8SCA0|Q8SCA0_9CAUD Putative uncharacterized protein OS=Stx2
           converting phage I PE=4 SV=1
          Length = 229

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 22/54 (40%), Positives = 27/54 (50%)
 Frame = -1

Query: 417 PHPIMLRLLMGFQAISHAPHCPLHCLSPLVAHGTGMPYQMYPHPRLHLGDKTLH 256
           PHP+ L  L G+Q   H  HCPL CL+   A    +P    PH +  L D  LH
Sbjct: 102 PHPLPLSPLSGWQPSFHH-HCPLRCLT---AQFPSVPSLHQPHLQRCLPDLALH 151


>tr|Q7Y3B8|Q7Y3B8_9CAUD Putative uncharacterized protein OS=Stx1
           converting phage PE=4 SV=1
          Length = 196

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 22/54 (40%), Positives = 27/54 (50%)
 Frame = -1

Query: 417 PHPIMLRLLMGFQAISHAPHCPLHCLSPLVAHGTGMPYQMYPHPRLHLGDKTLH 256
           PHP+ L  L G+Q   H  HCPL CL+   A    +P    PH +  L D  LH
Sbjct: 102 PHPLPLSPLSGWQPSFHH-HCPLRCLT---AQFPSVPSLHQPHLQRCLPDLALH 151


>tr|Q7Y2V7|Q7Y2V7_9CAUD Putative uncharacterized protein OS=Stx2
           converting phage II PE=4 SV=1
          Length = 196

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 22/54 (40%), Positives = 27/54 (50%)
 Frame = -1

Query: 417 PHPIMLRLLMGFQAISHAPHCPLHCLSPLVAHGTGMPYQMYPHPRLHLGDKTLH 256
           PHP+ L  L G+Q   H  HCPL CL+   A    +P    PH +  L D  LH
Sbjct: 102 PHPLPLSPLSGWQPSFHH-HCPLRCLT---AQFPSVPSLHQPHLQRCLPDLALH 151


>tr|A4I2I2|A4I2I2_LEIIN Putative uncharacterized protein
           OS=Leishmania infantum GN=LinJ26.2540 PE=4 SV=1
          Length = 454

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = -1

Query: 393 LMGFQAISHAPHCPLHCLSPLVAHGTGMPYQMYPHPRLHLGDKTL 259
           +M      H PHCP H + P+   GTG   Q  P  R   G+ TL
Sbjct: 216 MMQVDGFVHCPHCPPHLVQPVECWGTGRTLQTVPLHR--FGENTL 258


>tr|B0X4Z2|B0X4Z2_CULQU Zinc finger protein 558 OS=Culex
           quinquefasciatus GN=CpipJ_CPIJ014510 PE=4 SV=1
          Length = 323

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 20/65 (30%), Positives = 27/65 (41%)
 Frame = -1

Query: 399 RLLMGFQAISHAPHCPLHCLSPLVAHGTGMPYQMYPHPRLHLGDKTLHNFQ*ETTCMHLH 220
           R L+ + A SH    P  C  P        P  +Y H ++H G  T H  + E    H +
Sbjct: 214 RFLLKYHANSHTGEKPYEC--PECGQRFSSPTNLYRHKQIHSGSGTFHRSE-EDHRFHCN 270

Query: 219 KCLCV 205
            C CV
Sbjct: 271 VCHCV 275


>tr|B4LQ04|B4LQ04_DROVI GJ20920 OS=Drosophila virilis GN=GJ20920
           PE=4 SV=1
          Length = 876

 Score = 26.9 bits (58), Expect(2) = 3.2
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -1

Query: 417 PHPIMLRLLMGFQAISHAPHCPLHCLSPLVAHGTGMPYQMYP 292
           PH  +L+ +  FQ I+H P     C   L++       +MYP
Sbjct: 170 PHFDLLKSMKRFQQINHFPGMSEICRKDLLSRNLNRMLKMYP 211



 Score = 26.2 bits (56), Expect(2) = 3.2
 Identities = 8/34 (23%), Positives = 18/34 (52%)
 Frame = -3

Query: 262 TSQFSIRNYMHAPSQVFVCSPSTLGKGPQVWILN 161
           T  + +  Y++   + F+  P + G+G  +W+ N
Sbjct: 225 TDTYDVAVYLNKHKRTFILKPYSSGQGRGIWLTN 258


>tr|A7BYI8|A7BYI8_9GAMM Putative uncharacterized protein
           OS=Beggiatoa sp. PS GN=BGP_0234 PE=4 SV=1
          Length = 70

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = -3

Query: 235 MHAPSQVFVCSPSTLGKGPQVWILNQGLE--ESWTKLHHSC 119
           +H  S +F+ SP+++G  P+ + LNQ  +  + +  LHH C
Sbjct: 26  LHGKSLIFIISPASVGCLPRTFCLNQDFQYLQDFQDLHHKC 66


>tr|B4GDI0|B4GDI0_DROPE GL10350 OS=Drosophila persimilis GN=GL10350
           PE=4 SV=1
          Length = 888

 Score = 28.5 bits (62), Expect(2) = 6.9
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -1

Query: 417 PHPIMLRLLMGFQAISHAPHCPLHCLSPLVAHGTGMPYQMYP 292
           PH  +LR +  FQ I+H P     C   L++       +MYP
Sbjct: 187 PHHDLLRSMKRFQQINHFPGMMEICRKDLLSRNLNRMLKMYP 228



 Score = 23.5 bits (49), Expect(2) = 6.9
 Identities = 7/32 (21%), Positives = 15/32 (46%)
 Frame = -3

Query: 262 TSQFSIRNYMHAPSQVFVCSPSTLGKGPQVWI 167
           T  + +  Y     + ++  P + G+G  +WI
Sbjct: 242 TDAYDVTTYASKHKRTYILKPYSSGRGRGIWI 273


>tr|Q28YG0|Q28YG0_DROPS GA14100 OS=Drosophila pseudoobscura
           pseudoobscura GN=GA14100 PE=4 SV=2
          Length = 886

 Score = 28.5 bits (62), Expect(2) = 6.9
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -1

Query: 417 PHPIMLRLLMGFQAISHAPHCPLHCLSPLVAHGTGMPYQMYP 292
           PH  +LR +  FQ I+H P     C   L++       +MYP
Sbjct: 188 PHHDLLRSMKRFQQINHFPGMMEICRKDLLSRNLNRMLKMYP 229



 Score = 23.5 bits (49), Expect(2) = 6.9
 Identities = 7/32 (21%), Positives = 15/32 (46%)
 Frame = -3

Query: 262 TSQFSIRNYMHAPSQVFVCSPSTLGKGPQVWI 167
           T  + +  Y     + ++  P + G+G  +WI
Sbjct: 243 TDAYDVTTYASKHKRTYILKPYSSGRGRGIWI 274


>tr|B4MUZ4|B4MUZ4_DROWI GK15405 OS=Drosophila willistoni GN=GK15405
            PE=4 SV=1
          Length = 1900

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 19/68 (27%), Positives = 30/68 (44%)
 Frame = -1

Query: 402  LRLLMGFQAISHAPHCPLHCLSPLVAHGTGMPYQMYPHPRLHLGDKTLHNFQ*ETTCMHL 223
            LR +   Q  +H  +C  H L  ++  G G+P Q+    R+     + H ++  T C  L
Sbjct: 1212 LRSVEQLQQNNHVTYC--HTLETMIERGLGIPIQLEELSRMQGHLNSAHQWKENTACAFL 1269

Query: 222  HKCLCVVL 199
             K  C  L
Sbjct: 1270 KKGTCYTL 1277