| BP912295 |
| Clone id |
YMU001_000017_D05 |
| Library |
YMU01 |
| Length |
575 |
| Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000017_D05. |
| Accession |
BP912295 |
| Tissue type |
prothallium |
| Developmental stage |
- |
| Contig ID |
- |
| Sequence |
CATAATTCATCTCTGCAGGCAGCTGAAGATAAGTGAAAGAGGAGATAGAGCTCTGTATCA
GCCGCAGCAGACAGCACCACCATCAGGGGTAATTTTTGAGGGAAACCGCTCCATGAGCTT
GAAGAGAATGGCAAGAGCTTCTGCCTCTCTTGCAGGAAGGGCTGATGGAACCATGGTACC
TCTGTCAAAGGCTGCTGCTGAGGTGCTAGTGAATGGAAAGGAGTTGGCTACGGAGGTTCT
GCATCGATCAAGCAAGAAGATGAAGACCAAAGAGGAAGCCCGCAGGAGAGCTGCAGAGGC
TCAAGCCCGAGTCACCGAGTCGCAGGAGGATAAGCATGCGCTGCTAGCGGTCAAAATCTC
CAGCTTGTCCCATGTTGAACCAGTCCCACCTAAGGACACTCCAGCTGGCAGTACGACTTC
TTCTGCACAAATTCGGAATGACTTGCGGTCACCTGATGCAGGAAGGGCAGGAGTAATTGG
TCATGCACTGGAAGCTTCTGAACCTTCAAATTTTGCTGGCGGAACTCTTATGGAGAGGCC
ATCCAAAAGGATGAAGCTGCTTTGTAGTACATGTG |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
O08839 |
| Definition |
sp|O08839|BIN1_RAT Myc box-dependent-interacting protein 1 OS=Rattus norvegicus |
| Align length |
179 |
| Score (bit) |
34.3 |
| E-value |
0.46 |
| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BP912295|Adiantum capillus-veneris mRNA, clone:
YMU001_000017_D05.
(575 letters)
Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|O08839|BIN1_RAT Myc box-dependent-interacting protein 1 OS=Ra... 34 0.46
sp|O08539|BIN1_MOUSE Myc box-dependent-interacting protein 1 OS=... 33 0.78
sp|O95359|TACC2_HUMAN Transforming acidic coiled-coil-containing... 32 1.7
sp|Q8K363|DDX18_MOUSE ATP-dependent RNA helicase DDX18 OS=Mus mu... 32 2.3
sp|Q38WX5|CCA_LACSS CCA-adding enzyme OS=Lactobacillus sakei sub... 32 3.0
sp|P40340|TBP7_YEAST TAT-binding homolog 7 OS=Saccharomyces cere... 31 3.9
sp|Q505D9|TRI67_MOUSE Tripartite motif-containing protein 67 OS=... 31 5.1
sp|P16315|GLTC_WHEAT Glutenin, low molecular weight subunit PTDU... 31 5.1
sp|Q9SS94|CD48C_ARATH Cell division control protein 48 homolog C... 31 5.1
sp|P26307|VIV1_MAIZE Regulatory protein viviparous-1 OS=Zea mays... 30 6.6
sp|Q4R3I0|MTX1_MACFA Metaxin-1 OS=Macaca fascicularis GN=MTX1 PE... 30 6.6
sp|Q052X8|CH10_LEPBL 10 kDa chaperonin OS=Leptospira borgpeterse... 30 6.6
sp|Q04S02|CH10_LEPBJ 10 kDa chaperonin OS=Leptospira borgpeterse... 30 6.6
sp|Q00958|LFY_ARATH Protein LEAFY OS=Arabidopsis thaliana GN=LFY... 30 8.6
sp|P08079|GDB0_WHEAT Gamma-gliadin (Fragment) OS=Triticum aestiv... 30 8.6
sp|P61437|CH10_LEPIN 10 kDa chaperonin OS=Leptospira interrogans... 30 8.6
sp|P61436|CH10_LEPIC 10 kDa chaperonin OS=Leptospira interrogans... 30 8.6
>sp|O08839|BIN1_RAT Myc box-dependent-interacting protein 1
OS=Rattus norvegicus GN=Bin1 PE=1 SV=1
Length = 588
Score = 34.3 bits (77), Expect = 0.46
Identities = 47/179 (26%), Positives = 70/179 (39%), Gaps = 16/179 (8%)
Frame = +2
Query: 59 QPQQTAPPSGVIFEGNRSMSLK-----------RMARASASLAGRADGTMVPLSKAAAEV 205
QP +AP +GN+S S R+ +G + G +P S +
Sbjct: 284 QPSDSAPE-----KGNKSPSPPPDGSPAATPEIRVNHEPEPASGASPGATIPKSPSQ--- 335
Query: 206 LVNGKELATEVLHRSSKKMKTKXXXXXXXXXXXXXV---TESQEDKHALLAVKISSLS-H 373
L G + H SK+MK + + T SQ + + + S L
Sbjct: 336 LRKGPPVPPPPKHTPSKEMKQEQILSLFDDAFVPEISVTTPSQFEAPGPFSEQASLLDLD 395
Query: 374 VEPVPPKDTPAGSTTSSAQ-IRNDLRSPDAGRAGVIGHALEASEPSNFAGGTLMERPSK 547
EP+PP +P + T S Q I DL P +AGV L + EPS+ G + PS+
Sbjct: 396 FEPLPPVASPVKAPTPSGQSIPWDLWEPTESQAGV----LPSGEPSSAEGSFAVAWPSQ 450
>sp|O08539|BIN1_MOUSE Myc box-dependent-interacting protein 1 OS=Mus
musculus GN=Bin1 PE=1 SV=1
Length = 588
Score = 33.5 bits (75), Expect = 0.78
Identities = 37/137 (27%), Positives = 57/137 (41%), Gaps = 5/137 (3%)
Frame = +2
Query: 152 AGRADGTMVPLSKAAAEVLVNGKELATEVLHRSSKKMKTKXXXXXXXXXXXXXV---TES 322
+G + G +P S + L G + H SK+MK + + T S
Sbjct: 321 SGASPGATIPKSPSQ---LRKGPPVPPPPKHTPSKEMKQEQILSLFDDAFVPEISVTTPS 377
Query: 323 QEDKHALLAVKISSLS-HVEPVPPKDTPAGSTTSSAQ-IRNDLRSPDAGRAGVIGHALEA 496
Q + + + S L EP+PP +P + T S Q I DL P +AG+ L +
Sbjct: 378 QFEAPGPFSEQASLLDLDFEPLPPVASPVKAPTPSGQSIPWDLWEPTESQAGI----LPS 433
Query: 497 SEPSNFAGGTLMERPSK 547
EPS+ G + PS+
Sbjct: 434 GEPSSAEGSFAVAWPSQ 450
>sp|O95359|TACC2_HUMAN Transforming acidic coiled-coil-containing
protein 2 OS=Homo sapiens GN=TACC2 PE=1 SV=3
Length = 2948
Score = 32.3 bits (72), Expect = 1.7
Identities = 20/52 (38%), Positives = 26/52 (50%)
Frame = +1
Query: 232 GGSASIKQEDEDQRGSPQESCRGSSPSHRVAGG*ACAASGQNLQLVPC*TSP 387
G S +IK++ +D GSP R +S V G C AS + L PC SP
Sbjct: 26 GNSQNIKRKQQDTPGSPDH--RDASSIGSVGLGGFCTASESSASLDPCLVSP 75
>sp|Q8K363|DDX18_MOUSE ATP-dependent RNA helicase DDX18 OS=Mus
musculus GN=Ddx18 PE=2 SV=1
Length = 660
Score = 32.0 bits (71), Expect = 2.3
Identities = 41/152 (26%), Positives = 54/152 (35%), Gaps = 11/152 (7%)
Frame = +2
Query: 17 RQLKISERGDRALYQPQQTAPPSGVIFEGNRSMSLKR---MARASASLAGRADGTM---- 175
R LK+ E D +L QPQ P G +LKR + A A G + T+
Sbjct: 23 RNLKLQETSDTSLSQPQNGDVPKETGKGGKVKKALKRSVPVDSAEAQSGGMPEETLENGK 82
Query: 176 VPLSKAAAEVLVNGKELATEVLHRSSKKMKTKXXXXXXXXXXXXXVTESQEDKHALLA-- 349
V S L NG+ T KK K K +++E A
Sbjct: 83 VKKSPQKLTTLANGEAAPTPPPDSEVKKKKKKKRKMANDAGPDTKKAKTEESAEACEEPE 142
Query: 350 --VKISSLSHVEPVPPKDTPAGSTTSSAQIRN 439
VK + S V +P T A TS A + N
Sbjct: 143 DDVKKADDSEVPSLPLGLTGAFEDTSFASLSN 174
>sp|Q38WX5|CCA_LACSS CCA-adding enzyme OS=Lactobacillus sakei subsp.
sakei (strain 23K) GN=cca PE=3 SV=1
Length = 397
Score = 31.6 bits (70), Expect = 3.0
Identities = 28/104 (26%), Positives = 42/104 (40%), Gaps = 4/104 (3%)
Frame = +2
Query: 80 PSGVIFEGNRSMSLKRMARASASLAGRADGTMVPLSKAAAEV---LVNGKELATEVLHRS 250
P V F + LKR +LA RADG ++ L A++ + +A E H
Sbjct: 100 PDSVTFVRSLEEDLKRRDFTINALAMRADGEIIDLFDGIADLKAHKIRAVGVADERFHED 159
Query: 251 SKKMKTKXXXXXXXXXXXXXVTESQEDKHALLAVKIS-SLSHVE 379
+ +M T++ +KHA L KI+ HVE
Sbjct: 160 ALRMMRAVRFESQLGFSVTETTQAAIEKHAALLEKIAIERIHVE 203
>sp|P40340|TBP7_YEAST TAT-binding homolog 7 OS=Saccharomyces
cerevisiae GN=YTA7 PE=1 SV=2
Length = 1379
Score = 31.2 bits (69), Expect = 3.9
Identities = 26/108 (24%), Positives = 40/108 (37%), Gaps = 3/108 (2%)
Frame = +2
Query: 53 LYQPQQTAPPSGVIFEGNRSMSLKRMARASASLAGRADGTMVPLSKAAAEVL---VNGKE 223
LYQ PP GV+F G MARA A+ + + + A++L V E
Sbjct: 438 LYQNFNITPPRGVLFHGPPGTGKTLMARALAASCSSDERKITFFMRKGADILSKWVGEAE 497
Query: 224 LATEVLHRSSKKMKTKXXXXXXXXXXXXXVTESQEDKHALLAVKISSL 367
+L +KK + + QE HA + + +L
Sbjct: 498 RQLRLLFEEAKKHQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLAL 545
>sp|Q505D9|TRI67_MOUSE Tripartite motif-containing protein 67 OS=Mus
musculus GN=Trim67 PE=2 SV=1
Length = 768
Score = 30.8 bits (68), Expect = 5.1
Identities = 23/65 (35%), Positives = 29/65 (44%)
Frame = +2
Query: 380 PVPPKDTPAGSTTSSAQIRNDLRSPDAGRAGVIGHALEASEPSNFAGGTLMERPSKRMKL 559
P PP+ TPA + TS+A RSP G AG AS P F T E + +
Sbjct: 252 PTPPEATPAVTGTSTASSAGGCRSP--GGAG-------ASAPRKFP--TCPEHEMENYSM 300
Query: 560 LCSTC 574
C +C
Sbjct: 301 YCVSC 305
>sp|P16315|GLTC_WHEAT Glutenin, low molecular weight subunit PTDUCD1
OS=Triticum aestivum PE=2 SV=1
Length = 295
Score = 30.8 bits (68), Expect = 5.1
Identities = 25/58 (43%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
Frame = -1
Query: 239 EPP*PTPFHSLAPQQQPL--TEVPWFHQ---PFLQERQKL--LPFSSSSWSGFPQKLP 87
E P P P H+L PQQQP + P F Q FLQ++ L LPFS PQ+ P
Sbjct: 35 EQPLP-PQHTLFPQQQPFPQQQQPPFSQQQPSFLQQQPILPQLPFSQQQQPVLPQQSP 91
>sp|Q9SS94|CD48C_ARATH Cell division control protein 48 homolog C
OS=Arabidopsis thaliana GN=CDC48C PE=1 SV=2
Length = 820
Score = 30.8 bits (68), Expect = 5.1
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +2
Query: 77 PPSGVIFEGNRSMSLKRMARASASLAGRADGTMVPLSKAAAEVLVNGKELATE 235
PPSG++F G ++A A A+ AG VP K +A +++G A+E
Sbjct: 266 PPSGILFHGPPGCGKTKLANAIANEAG------VPFYKISATEVISGVSGASE 312
>sp|P26307|VIV1_MAIZE Regulatory protein viviparous-1 OS=Zea mays
GN=VP1 PE=2 SV=1
Length = 691
Score = 30.4 bits (67), Expect = 6.6
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = -3
Query: 567 LQSSFILLDGLSIRVPPAKFEGSEASSA*PITPALPASGDRKSFRICAEEVVLPAGVS 394
++S L+ G+ +R PPA+ +GS +S P PA +R + E+ V+ GVS
Sbjct: 606 VKSGKYLIRGVKVRPPPAQEQGSGSSGGGKHRPLCPAGPERAAAAGAPEDAVVD-GVS 662
|
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
B4M2V3 |
| Definition |
tr|B4M2V3|B4M2V3_DROVI GJ19089 OS=Drosophila virilis |
| Align length |
85 |
| Score (bit) |
35.8 |
| E-value |
1.7 |
| Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BP912295|Adiantum capillus-veneris mRNA, clone:
YMU001_000017_D05.
(575 letters)
Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tr|B4M2V3|B4M2V3_DROVI GJ19089 OS=Drosophila virilis GN=GJ19089 ... 36 1.7
tr|A9FA29|A9FA29_SORC5 Putative uncharacterized protein OS=Soran... 31 2.0
tr|Q3SH92|Q3SH92_THIDA Heavy metal translocating P-type ATPase O... 35 2.9
tr|A7HDB3|A7HDB3_ANADF Organic solvent tolerance protein OstA-li... 35 2.9
tr|A7UUH5|A7UUH5_ANOGA AGAP006657-PA OS=Anopheles gambiae GN=AGA... 35 3.8
tr|B7Q201|B7Q201_IXOSC Agrin, putative OS=Ixodes scapularis GN=I... 34 5.0
tr|Q4T811|Q4T811_TETNG Chromosome undetermined SCAF7926, whole g... 34 6.5
tr|B8JDI4|B8JDI4_9DELT OstA family protein OS=Anaeromyxobacter d... 31 8.9
>tr|B4M2V3|B4M2V3_DROVI GJ19089 OS=Drosophila virilis GN=GJ19089
PE=4 SV=1
Length = 930
Score = 35.8 bits (81), Expect = 1.7
Identities = 29/85 (34%), Positives = 35/85 (41%)
Frame = -1
Query: 350 PLAAHAYPPATR*LGLEPLQLSCGLPLWSSSSCLIDAEPP*PTPFHSLAPQQQPLTEVPW 171
P AH PPA P Q P S + PP P H LAPQ +P ++P
Sbjct: 170 PPTAHYSPPAQ-----PPSQYGQPSPAVSQYA------PPSPKKQHHLAPQYRPPPQIPQ 218
Query: 170 FHQPFLQERQKLLPFSSSSWSGFPQ 96
F P R LPFS+ + F Q
Sbjct: 219 FSTPPASSRP--LPFSTQLYKPFHQ 241
>tr|A9FA29|A9FA29_SORC5 Putative uncharacterized protein
OS=Sorangium cellulosum (strain So ce56) GN=sce7691 PE=4
SV=1
Length = 515
Score = 31.2 bits (69), Expect(2) = 2.0
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -1
Query: 389 VGLVQHGTSWRF*PLAAHAYPPATR*LGLEPLQLSCGLPLWSSSSC 252
+GL+ G + R+ LA H + P+ + P CG P WS SC
Sbjct: 109 LGLISTGGALRY--LAPHRFAPSRAASPVAPPVPVCGAPCWSGESC 152
Score = 22.7 bits (47), Expect(2) = 2.0
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 6/34 (17%)
Frame = -2
Query: 469 CPSC------IR*PQVIPNLCRRSRTASWSVLRW 386
CP C R P P++ + ASW L W
Sbjct: 66 CPECGEPADAPRRPATAPSIPDAPKDASWLALHW 99
>tr|Q3SH92|Q3SH92_THIDA Heavy metal translocating P-type ATPase
OS=Thiobacillus denitrificans (strain ATCC 25259)
GN=Tbd_2044 PE=3 SV=1
Length = 834
Score = 35.0 bits (79), Expect = 2.9
Identities = 20/57 (35%), Positives = 28/57 (49%)
Frame = +2
Query: 41 GDRALYQPQQTAPPSGVIFEGNRSMSLKRMARASASLAGRADGTMVPLSKAAAEVLV 211
GD L +P +T P GV+ EG ++S + S +A R D +V S A LV
Sbjct: 345 GDHVLVRPGETLPADGVVVEGESAVSEAMLTGESQPIAKRVDAKVVGGSLNEASPLV 401
>tr|A7HDB3|A7HDB3_ANADF Organic solvent tolerance protein OstA-like
protein OS=Anaeromyxobacter sp. (strain Fw109-5)
GN=Anae109_2508 PE=4 SV=1
Length = 809
Score = 35.0 bits (79), Expect = 2.9
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Frame = -1
Query: 224 TPFHSLAPQQQPLTEVPWFHQPFLQERQK--LLP-FSSSSWSGFPQKLPLMVVLSAAADT 54
TP + P+ +PW + P L +RQ LLP +SSS +GF +LP+ V L +AD
Sbjct: 202 TPRFLFVDRPVPVLPLPWLYLP-LGDRQTGLLLPQIASSSATGFAVELPVFVTLGRSADL 260
Query: 53 EL 48
L
Sbjct: 261 TL 262
>tr|A7UUH5|A7UUH5_ANOGA AGAP006657-PA OS=Anopheles gambiae
GN=AGAP006657 PE=4 SV=1
Length = 491
Score = 34.7 bits (78), Expect = 3.8
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Frame = +2
Query: 347 AVKISSLSHVEPVPPKDTPAGSTTSSAQIRNDLRSPDAGRAGVIG----HALEASEPSNF 514
A SSLS +P PP P+ S++SSA S AG A V+ A EA+ +N
Sbjct: 10 AAASSSLSAPQPPPPPPPPSSSSSSSATTVATSASGSAGTAVVVATVATSASEATSTNNS 69
Query: 515 AGGT 526
GG+
Sbjct: 70 GGGS 73
>tr|B7Q201|B7Q201_IXOSC Agrin, putative OS=Ixodes scapularis
GN=IscW_ISCW020057 PE=4 SV=1
Length = 1045
Score = 34.3 bits (77), Expect = 5.0
Identities = 26/76 (34%), Positives = 33/76 (43%)
Frame = -1
Query: 341 AHAYPPATR*LGLEPLQLSCGLPLWSSSSCLIDAEPP*PTPFHSLAPQQQPLTEVPWFHQ 162
AH P LG +P Q S GLPL S+ EP TP + AP+ P VP F
Sbjct: 920 AHRALPEEDALGQDP-QDSVGLPLLSTRPTAATDEPQEETPEEARAPEDLPALRVPEFSG 978
Query: 161 PFLQERQKLLPFSSSS 114
E +L ++ S
Sbjct: 979 RSYMELPRLQAYTGLS 994
>tr|Q4T811|Q4T811_TETNG Chromosome undetermined SCAF7926, whole
genome shotgun sequence. (Fragment) OS=Tetraodon
nigroviridis GN=GSTENG00005456001 PE=4 SV=1
Length = 338
Score = 33.9 bits (76), Expect = 6.5
Identities = 25/68 (36%), Positives = 31/68 (45%)
Frame = +1
Query: 343 ASGQNLQLVPC*TSPT*GHSSWQYDFFCTNSE*LAVT*CRKGRSNWSCTGSF*TFKFCWR 522
ASGQ LQL P + P YD N+ L + CR R++ SC G F C +
Sbjct: 163 ASGQRLQLAPVVSQPI-------YDNRAPNTAELKI--CRVNRNSGSCKGGDEIFLLCDK 213
Query: 523 NSYGEAIQ 546
GEA Q
Sbjct: 214 VQKGEAAQ 221
>tr|B8JDI4|B8JDI4_9DELT OstA family protein OS=Anaeromyxobacter
dehalogenans 2CP-1 GN=A2cp1_2696 PE=3 SV=1
Length = 816
Score = 30.8 bits (68), Expect(2) = 8.9
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = -1
Query: 224 TPFHSLAPQQQPLTEVPWFHQPFLQERQKLLPF---SSSSWSGFPQKLPLMVVLSAAADT 54
TP + P+ +PW P L ERQ L F +S+ +GF LP+ V L +AD
Sbjct: 193 TPRFLFVKRPVPVLILPWIFLP-LGERQSGLLFPSVASTGATGFGVALPVFVTLGRSADA 251
Query: 53 EL 48
L
Sbjct: 252 TL 253
Score = 20.8 bits (42), Expect(2) = 8.9
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = -2
Query: 325 LRLGDSGLSLC 293
LRLGD+ L+LC
Sbjct: 149 LRLGDARLTLC 159
|