BP912298
Clone id YMU001_000017_D09
Library
Length 480
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000017_D09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
TTTTCATTTTCAAGGCAGAAGATGTCACAAAATCACTCTCTACTTCAGCCTCCACTGAAC
AACTGGTAAGCAGATAAAATGCTTCCGCACTGCCAAAGCAAGTACAAAATCACTCTCTAC
TTCAGCCTCGACTGAACAACTGGTAAGCAGATAAAATGCTTCCGCACTGCTCAAGCAAGT
TTATTAAAGAAAATCTACATGCCTCTCTCCAAATGCTACTGACTTCCCATGTGACAATAT
GCACACCAAGTGACAACATTTACGAAGGCTATTGATAAAAAAATCACAAAGAAAAAAGGT
TATGAAAAAGGCACTCTCGAAGATCAAGATGCTTTGCCATCTTGTAAGCTACGATACCGC
TTTTCTCCTCCTGATTCATCCCTCAATTTAATAGACCCCCTTGCAAGGTAAGCTTATTAC
CCTGACACTTCAGTGCCTGAAATCACGAGTACCTGCAGGTAATATCTCAAGGGCGAATTC
■■Homology search results ■■ -
sp_hit_id Q8NF91
Definition sp|Q8NF91|SYNE1_HUMAN Nesprin-1 OS=Homo sapiens
Align length 89
Score (bit) 31.2
E-value 2.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912298|Adiantum capillus-veneris mRNA, clone:
YMU001_000017_D09.
(480 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q8NF91|SYNE1_HUMAN Nesprin-1 OS=Homo sapiens GN=SYNE1 PE=1 SV=2 31 2.5
sp|Q9ERU9|RBP2_MOUSE E3 SUMO-protein ligase RanBP2 OS=Mus muscul... 30 4.3
sp|Q920H8|HEPH_RAT Hephaestin OS=Rattus norvegicus GN=Heph PE=2 ... 30 7.5
sp|Q5UQV3|YL371_MIMIV Putative ankyrin repeat protein L371 OS=Ac... 29 9.6
sp|Q3K892|SYA_PSEPF Alanyl-tRNA synthetase OS=Pseudomonas fluore... 29 9.8

>sp|Q8NF91|SYNE1_HUMAN Nesprin-1 OS=Homo sapiens GN=SYNE1 PE=1 SV=2
Length = 8797

Score = 31.2 bits (69), Expect = 2.5
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Frame = +3

Query: 15 AEDVTKSLSTSASTEQLVSR*NASALPKQVQNHSLLQPRLNN--W*ADKMLPHCSSKF-- 182
A D+ ++ S T+QL A+ +++ + RLNN D ++ C+
Sbjct: 3947 APDLLETSSLETITQQLAHH---KAMMEEIAG---FEDRLNNLQMKGDTLIGQCADHLQA 4000

Query: 183 -IKENLHASLQMLLTSHVTICTPSDNIYE 266
+K+N+HA LQ S+ IC+ + +Y+
Sbjct: 4001 KLKQNVHAHLQGTKDSYSAICSTAQRMYQ 4029


>sp|Q9ERU9|RBP2_MOUSE E3 SUMO-protein ligase RanBP2 OS=Mus musculus
GN=Ranbp2 PE=1 SV=1
Length = 3053

Score = 30.4 bits (67), Expect = 4.3
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +2

Query: 257 HLRRLLIKKSQRKKVMKKALSKIKMLCHLVSY 352
H+ LL+K Q+ + +ALS++ LC+LV++
Sbjct: 293 HVGSLLLKMGQQSDIQWRALSELAALCYLVAF 324


>sp|Q920H8|HEPH_RAT Hephaestin OS=Rattus norvegicus GN=Heph PE=2
SV=1
Length = 1157

Score = 29.6 bits (65), Expect = 7.5
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = -1

Query: 171 SSAEAFYLLTSCSVEAEVESDFVLALAVRKHFICLPVVQW 52
S +AFY + SCS++ VE L VR++FI +QW
Sbjct: 355 SGMQAFYKVDSCSMDPPVEQ---LTGKVRQYFIQAHEIQW 391


>sp|Q5UQV3|YL371_MIMIV Putative ankyrin repeat protein L371
OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L371 PE=4
SV=1
Length = 765

Score = 29.3 bits (64), Expect = 9.6
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +2

Query: 212 NATDFPCDNMHTK*QHLRRL--LIKKSQRKKVM 304
N DF D+ H+K QHL +L LIK ++ K+ M
Sbjct: 9 NGDDFNGDDFHSKTQHLNKLFNLIKSNKEKEFM 41


>sp|Q3K892|SYA_PSEPF Alanyl-tRNA synthetase OS=Pseudomonas
fluorescens (strain Pf0-1) GN=alaS PE=3 SV=1
Length = 874

Score = 29.3 bits (64), Expect = 9.8
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +1

Query: 79 MLPHCQSKYKITLYFSLD*TTGKQIKCFRTAQASL 183
+L H S Y+I L+ SL + K I C AQASL
Sbjct: 245 VLQHVHSNYEIDLFQSLLAASAKAIGCTNDAQASL 279


tr_hit_id B8NQS1
Definition tr|B8NQS1|B8NQS1_ASPFL Dimethylaniline monooxygenase, putative OS=Aspergillus flavus NRRL3357
Align length 59
Score (bit) 33.1
E-value 7.0
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912298|Adiantum capillus-veneris mRNA, clone:
YMU001_000017_D09.
(480 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B8NQS1|B8NQS1_ASPFL Dimethylaniline monooxygenase, putative O... 33 7.0

>tr|B8NQS1|B8NQS1_ASPFL Dimethylaniline monooxygenase, putative
OS=Aspergillus flavus NRRL3357 GN=AFLA_002150 PE=4 SV=1
Length = 483

Score = 33.1 bits (74), Expect = 7.0
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = +3

Query: 90 LPKQVQNHSLLQPRLNNW*ADKMLPHCSSKFIKENLHASLQMLLTSHVTICTPSDNIYE 266
LPK +Q PR N W D+ L C E+LH + T+++ CTP+ + +
Sbjct: 270 LPKHIQADPHFTPRYNVW--DQRLLACPDGDFFESLHRGNVRIETANIQTCTPNSIVLD 326