NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912303
Clone id YMU001_000017_E02
Library
Length 524
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000017_E02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GACCAACATTTTCGCCAGAATTGGCTCATCAAAGATCAAGAACAGAGCAAGCAATTGTAC
ATACGACAATTCATGCTGCTGTAGCAGCAGCAACAACTGCATTGTCAACATCTGTTGAAG
CAACAAGTTTTGATGGTTCGACATGCTCAGCTGACGGATGCAAGTAAGATGGCAAAACAT
TCAGCACTCATGAAGCAGATGCTAATGAACCAAAATCAACAGGCGAACATGCGAAATATT
CTTCAACAGCAGCAAAAGGGCACATCTTTGCAAGCAGCGGCTTTGCCACAGATACCTCCA
CCTGCTCAATTATCTCCTGAGAGTTACCTACAAAACATAGCATATCCTGCTTCGCTGATT
TCAAATGTTGCAGCACCTTTGCAGGCATCTACACCACCTTTTATGGCACCCTCCCCGTCT
CCAGTAGTTGAGGATTCTGAAATAATGCCAATGGCCCTCAACAGTCTTGGAGGTGCCGAT
GTGATTACTGCTTTGCATCAAAATAACATAGCTTCTTACCCTTT
■■Homology search results ■■ -
sp_hit_id Q4L9P0
Definition sp|Q4L9P0|SRAP_STAHJ Serine-rich adhesin for platelets OS=Staphylococcus haemolyticus (strain JCSC1435)
Align length 66
Score (bit) 31.6
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912303|Adiantum capillus-veneris mRNA, clone:
YMU001_000017_E02.
         (524 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q4L9P0|SRAP_STAHJ Serine-rich adhesin for platelets OS=Staphy...    32   2.4  
sp|Q685J3|MUC17_HUMAN Mucin-17 OS=Homo sapiens GN=MUC17 PE=1 SV=1      32   2.4  
sp|Q5L627|IF2_CHLAB Translation initiation factor IF-2 OS=Chlamy...    30   9.1  
sp|P34903|GBRA3_HUMAN Gamma-aminobutyric acid receptor subunit a...    30   9.1  
sp|O13368|ALA1_CANAL Agglutinin-like protein ALA1 OS=Candida alb...    30   9.1  

>sp|Q4L9P0|SRAP_STAHJ Serine-rich adhesin for platelets
           OS=Staphylococcus haemolyticus (strain JCSC1435) GN=sraP
           PE=3 SV=1
          Length = 3608

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 24/66 (36%), Positives = 29/66 (43%)
 Frame = +3

Query: 105 STSVEATSFDGSTCSADGCK*DGKTFSTHEADANEPKSTGEHAKYSSTAAKGHIFASSGF 284
           STS +ATS   ST S +       T S    D+   KST    K  S+ +     ASS  
Sbjct: 133 STSQDATS---STNSTEKSTSSSTTDSQTSTDSTSDKSTSNSEKQDSSMSNSDTKASSSS 189

Query: 285 ATDTST 302
            TD ST
Sbjct: 190 TTDNST 195


>sp|Q685J3|MUC17_HUMAN Mucin-17 OS=Homo sapiens GN=MUC17 PE=1 SV=1
          Length = 4493

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 26/79 (32%), Positives = 34/79 (43%), Gaps = 13/79 (16%)
 Frame = +3

Query: 105 STSVEATSFDGSTCSADG-------------CK*DGKTFSTHEADANEPKSTGEHAKYSS 245
           ST+ E TS   ST S  G                +  T ST   D+N P +T   A  SS
Sbjct: 611 STTAEGTSMPTSTYSERGTTITSMSVSTTLVASSEASTLSTTPVDSNTPVTTSTEATSSS 670

Query: 246 TAAKGHIFASSGFATDTST 302
           T A+G    +S + T+ ST
Sbjct: 671 TTAEGTSMPTSTY-TEGST 688


>sp|Q5L627|IF2_CHLAB Translation initiation factor IF-2
           OS=Chlamydophila abortus GN=infB PE=3 SV=1
          Length = 874

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 9/37 (24%), Positives = 24/37 (64%)
 Frame = +1

Query: 331 QNIAYPASLISNVAAPLQASTPPFMAPSPSPVVEDSE 441
           ++ A+   ++  V +PL+++ P  + P+P+ +V++ E
Sbjct: 100 ESTAFSPPVVEEVVSPLESAEPEIVEPTPASIVDEPE 136


>sp|P34903|GBRA3_HUMAN Gamma-aminobutyric acid receptor subunit
           alpha-3 OS=Homo sapiens GN=GABRA3 PE=1 SV=1
          Length = 492

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +1

Query: 352 SLISNVAAPLQASTPPFMAPSPSPVVEDSEIMPMALNSLGGADVITAL 495
           S IS  AAP  +STP  +A   +  V+DS       NS+   D I+ +
Sbjct: 414 STISKGAAPSASSTPTIIASPKATYVQDSPTETKTYNSVSKVDKISRI 461


>sp|O13368|ALA1_CANAL Agglutinin-like protein ALA1 OS=Candida albicans
            GN=ALA1 PE=4 SV=1
          Length = 1419

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 22/72 (30%), Positives = 37/72 (51%)
 Frame = +3

Query: 102  LSTSVEATSFDGSTCSADGCK*DGKTFSTHEADANEPKSTGEHAKYSSTAAKGHIFASSG 281
            ++TS+ +TS   S+  A       K+ ++ EA  + P ST     YS+  AKG  +A+SG
Sbjct: 1210 IATSLRSTS--SSSNHATESSGTVKSEASAEAIPSPPTSTDNRLSYSTEEAKGITYANSG 1267

Query: 282  FATDTSTCSIIS 317
               +  T S ++
Sbjct: 1268 STNNLITESQVA 1279
tr_hit_id Q9FWJ8
Definition tr|Q9FWJ8|Q9FWJ8_ARATH Putative uncharacterized protein F21N10.2 OS=Arabidopsis thaliana
Align length 66
Score (bit) 38.9
E-value 0.16
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912303|Adiantum capillus-veneris mRNA, clone:
YMU001_000017_E02.
         (524 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9FWJ8|Q9FWJ8_ARATH Putative uncharacterized protein F21N10.2...    39   0.16 
tr|Q9SHV7|Q9SHV7_ARATH Putative uncharacterized protein At2g1044...    37   0.78 
tr|Q54S51|Q54S51_DICDI Putative uncharacterized protein OS=Dicty...    34   5.1  
tr|Q3KQ22|Q3KQ22_XENLA MGC131085 protein OS=Xenopus laevis GN=se...    33   6.6  
tr|O61617|O61617_BRAFL Paired box protein Pax-2 beta isoform OS=...    33   6.6  
tr|A8NTZ6|A8NTZ6_COPC7 Putative uncharacterized protein OS=Copri...    33   6.6  
tr|B2UHV0|B2UHV0_RALPJ CheA signal transduction histidine kinase...    33   8.6  
tr|B7WS02|B7WS02_COMTE Putative transmembrane protein OS=Comamon...    33   8.6  
tr|A7CB08|A7CB08_BURPI CheA signal transduction histidine kinase...    33   8.6  

>tr|Q9FWJ8|Q9FWJ8_ARATH Putative uncharacterized protein F21N10.2
           OS=Arabidopsis thaliana GN=F21N10.2 PE=4 SV=1
          Length = 634

 Score = 38.9 bits (89), Expect = 0.16
 Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
 Frame = +1

Query: 313 SPESYLQNIAYPASLISNVAAPLQASTPPFMAPSPSPVVEDSEIMPMALNS-LGGADVIT 489
           SP+   Q I  PA+ ++    PL++S  PF+AP+PSPV  DSE MP+++ S + G ++ +
Sbjct: 284 SPQLVDQQIL-PAT-VNKTGTPLKSSGSPFVAPAPSPVPGDSE-MPISVESPVSGVEINS 340

Query: 490 ALHQNN 507
            L  ++
Sbjct: 341 TLDSSS 346


>tr|Q9SHV7|Q9SHV7_ARATH Putative uncharacterized protein At2g10440
           OS=Arabidopsis thaliana GN=At2g10440 PE=2 SV=1
          Length = 935

 Score = 36.6 bits (83), Expect = 0.78
 Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
 Frame = +1

Query: 313 SPESYLQNIAYPASLISNVAAPLQASTPPFMAPSPSPVVEDSEIMPMALNS-LGGADVIT 489
           SP+   Q+I  PA+ I+    PL +S   F+AP+PSPV  DSE MP+++ S + G D I 
Sbjct: 574 SPQLVDQHIL-PAT-INKTGTPLNSSGSAFVAPAPSPVPGDSE-MPISVESPVSGVDEIN 630

Query: 490 A 492
           +
Sbjct: 631 S 631


>tr|Q54S51|Q54S51_DICDI Putative uncharacterized protein
           OS=Dictyostelium discoideum GN=DDB_0204904 PE=4 SV=1
          Length = 134

 Score = 33.9 bits (76), Expect = 5.1
 Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 6/68 (8%)
 Frame = -2

Query: 319 QEIIEQVEVSVAKPLLA-KMCPFAA-VEEYF----ACSPVDFGSLASAS*VLNVLPSYLH 158
           +E++E + + + K LLA KM  F   ++ +F     C+ +   S   +S +LN LP YLH
Sbjct: 11  RELLE-IYIYILKVLLACKMFNFVVPIKTFFYRVICCTALTLASPTISSVLLNQLPKYLH 69

Query: 157 PSAEHVEP 134
           PS ++V P
Sbjct: 70  PSHQYVLP 77


>tr|Q3KQ22|Q3KQ22_XENLA MGC131085 protein OS=Xenopus laevis
           GN=sertad2 PE=2 SV=1
          Length = 317

 Score = 33.5 bits (75), Expect = 6.6
 Identities = 25/94 (26%), Positives = 40/94 (42%)
 Frame = +3

Query: 105 STSVEATSFDGSTCSADGCK*DGKTFSTHEADANEPKSTGEHAKYSSTAAKGHIFASSGF 284
           STS EA + + +T   +    D    STH+ +  +   T E     S      +  S+GF
Sbjct: 187 STSTEAAATEEATAHVND---DTAAASTHKPEGTQESRTSEPKPMDSLPGNFELTTSTGF 243

Query: 285 ATDTSTCSIIS*ELPTKHSISCFADFKCCSTFAG 386
            TD +   I+  ++ T        DF  C++ AG
Sbjct: 244 LTDLTLDDILFSDIDTS-----MYDFDPCTSNAG 272


>tr|O61617|O61617_BRAFL Paired box protein Pax-2 beta isoform
           OS=Branchiostoma floridae PE=2 SV=1
          Length = 438

 Score = 33.5 bits (75), Expect = 6.6
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
 Frame = +1

Query: 337 IAYPASLISNVAAPLQASTPPFMA----PSPSPVVEDSEIMPMALNSLGGADVITALHQN 504
           +A PA+   + +AP  +++PP  A    PSPSP    +     A ++ G   V+  +   
Sbjct: 314 VAVPATTPPSASAPSNSASPPGSAKSSEPSPSPTATTTTTTTAATSNTGSLTVLQPVGSA 373

Query: 505 NIASYP 522
           ++  YP
Sbjct: 374 SLGGYP 379


>tr|A8NTZ6|A8NTZ6_COPC7 Putative uncharacterized protein
           OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
           9003) GN=CC1G_06427 PE=4 SV=1
          Length = 389

 Score = 33.5 bits (75), Expect = 6.6
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +1

Query: 346 PASLISNVAAPLQASTPPFMAPSPSPVVEDSEIMP 450
           PAS+ S  ++   A TPP  +PSPSP V  S   P
Sbjct: 99  PASISSYTSSSYYAPTPPAQSPSPSPSVSSSSSPP 133


>tr|B2UHV0|B2UHV0_RALPJ CheA signal transduction histidine kinase
           OS=Ralstonia pickettii (strain 12J) GN=Rpic_4048 PE=4
           SV=1
          Length = 724

 Score = 33.1 bits (74), Expect = 8.6
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +1

Query: 346 PASLISNVAAPLQASTPPFMAPSPSPVVEDSEIMPMALNSLGGADV 483
           P +    VAAP+ A+  P  AP P+PVV ++    +  +  GG D+
Sbjct: 133 PVAAAPAVAAPVAAAPEPVAAPQPAPVVVEAPAAEVVGDIEGGLDI 178


>tr|B7WS02|B7WS02_COMTE Putative transmembrane protein OS=Comamonas
           testosteroni KF-1 GN=CtesDRAFT_PD4004 PE=3 SV=1
          Length = 975

 Score = 33.1 bits (74), Expect = 8.6
 Identities = 16/32 (50%), Positives = 24/32 (75%)
 Frame = +1

Query: 334 NIAYPASLISNVAAPLQASTPPFMAPSPSPVV 429
           ++A PA+  +NVAAP+ A+TP   AP+P+P V
Sbjct: 402 SVAVPATGAANVAAPVAAATP--AAPAPAPAV 431


>tr|A7CB08|A7CB08_BURPI CheA signal transduction histidine kinase
           OS=Ralstonia pickettii 12D GN=Rpic12DDRAFT_3930 PE=4
           SV=1
          Length = 724

 Score = 33.1 bits (74), Expect = 8.6
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +1

Query: 346 PASLISNVAAPLQASTPPFMAPSPSPVVEDSEIMPMALNSLGGADV 483
           P +    VAAP+ A+  P  AP P+PVV ++    +  +  GG D+
Sbjct: 133 PVAAAPAVAAPVAAAPEPVAAPQPAPVVVEAPAAEVVGDIEGGLDI 178