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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912308
Clone id YMU001_000017_E07
Library
Length 583
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000017_E07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AGGAGACACCTCCTTTTCGATTGTGCCAATGAAGTTCTATTGGATATTTTGGGGCCTTAC
ATGAACCGACGTGTGTGGTTAAGTTCAAAGGTTGCAGCTTCTATGCCTACCGGGAAGGAC
CTTGTAAATCTTCTCTGGACACACATTTCGTGCTCATTGTGCTTCCATTCAGGGTCGCAG
GAGACATTAGAGAATCTGGTGACAAAAGATCTTGGGAAGGGTAGCCGGTGGCTTGATACT
GGTGTGGAAATTGAAGCAGCAGGGCTTGATGTGGAGAGAGCCAATCTAGATGATCTGATT
GAAGAGACTCTGCTGGTTCTGTGAAGCCAACAAAAGCGTGGTAGGATGGTTTGTGAGGTT
GTGCAGCACAGAACTTGAAGCCCTTGATCTCCCTGGACGGGTCTATGGTGCACAATTGCT
TTGTAAAGTAAACCACTAGCATTGTAAAGGTGTAAGTAGGGGGTCTTTGACCAGGAGTTT
ATGATGTTGTTTCAGTTTATGTACCCTTCAACAATGGATCAGAGGGTACTAGTGTGATTG
ACATACGATAATCTCTTGAAGAGTGCTAGTTAGTTTCACATAT
■■Homology search results ■■ -
sp_hit_id Q9QXG9
Definition sp|Q9QXG9|TINF2_MOUSE TERF1-interacting nuclear factor 2 OS=Mus musculus
Align length 43
Score (bit) 31.6
E-value 3.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912308|Adiantum capillus-veneris mRNA, clone:
YMU001_000017_E07.
         (583 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9QXG9|TINF2_MOUSE TERF1-interacting nuclear factor 2 OS=Mus ...    32   3.0  
sp|Q9WTJ6|MTL5_MOUSE Tesmin OS=Mus musculus GN=Mtl5 PE=2 SV=2          31   5.2  
sp|Q7VR18|FABH_BLOFL 3-oxoacyl-[acyl-carrier-protein] synthase 3...    31   5.2  
sp|A1CME3|SEC16_ASPCL COPII coat assembly protein sec16 OS=Asper...    30   6.7  
sp|Q5XHX9|MTL5_RAT Tesmin OS=Rattus norvegicus GN=Mtl5 PE=2 SV=2       30   8.8  

>sp|Q9QXG9|TINF2_MOUSE TERF1-interacting nuclear factor 2 OS=Mus
           musculus GN=Tinf2 PE=2 SV=1
          Length = 341

 Score = 31.6 bits (70), Expect = 3.0
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = -1

Query: 238 YQATGYPSQDLLSPDSLMSPATLNGSTMSTKCVSREDLQGPSR 110
           ++  G P+QDL +P S   P   + +++ T+ V  E+ + PSR
Sbjct: 277 FRNMGLPAQDLSNPKSREEPGAASAASVGTEPVCTEEAKTPSR 319


>sp|Q9WTJ6|MTL5_MOUSE Tesmin OS=Mus musculus GN=Mtl5 PE=2 SV=2
          Length = 475

 Score = 30.8 bits (68), Expect = 5.2
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = -1

Query: 277 SPHQALLLQFPHQYQATGYPSQDLLSPDSLMSPATLNGSTMSTKCVSRE 131
           SP + +L+  PH  +   + S   LSP     P  L  +  +  C+S E
Sbjct: 373 SPERKMLMSTPHYMEPGDFESSHYLSPAKFSGPPKLRKNRQAFSCISWE 421


>sp|Q7VR18|FABH_BLOFL 3-oxoacyl-[acyl-carrier-protein] synthase 3
           OS=Blochmannia floridanus GN=fabH PE=3 SV=1
          Length = 318

 Score = 30.8 bits (68), Expect = 5.2
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = -1

Query: 313 AESLQSDHLDWLSPHQALL 257
           A +LQ D LDWL PHQA L
Sbjct: 231 ANNLQQDELDWLVPHQANL 249


>sp|A1CME3|SEC16_ASPCL COPII coat assembly protein sec16
           OS=Aspergillus clavatus GN=sec16 PE=3 SV=1
          Length = 1875

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 7/44 (15%)
 Frame = -1

Query: 247 PHQYQATGYPSQDLLSP-------DSLMSPATLNGSTMSTKCVS 137
           P +   T  PSQ LLSP       D L  PA+++G+T  TK V+
Sbjct: 852 PPRRSQTQSPSQQLLSPRLSLPPIDPLQRPASVHGATSPTKTVN 895


>sp|Q5XHX9|MTL5_RAT Tesmin OS=Rattus norvegicus GN=Mtl5 PE=2 SV=2
          Length = 475

 Score = 30.0 bits (66), Expect = 8.8
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = -1

Query: 277 SPHQALLLQFPHQYQATGYPSQDLLSPDSLMSPATLNGSTMSTKCVSRE 131
           SP + +L+  PH  +   + S   LSP     P  L  +  +  C+S E
Sbjct: 373 SPERKMLMSTPHYMEPGDFESSHHLSPAKFSGPPRLRKNRQAFSCISWE 421
tr_hit_id Q2HTJ8
Definition tr|Q2HTJ8|Q2HTJ8_MEDTR (, related) OS=Medicago truncatula
Align length 112
Score (bit) 61.6
E-value 3.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912308|Adiantum capillus-veneris mRNA, clone:
YMU001_000017_E07.
         (583 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q2HTJ8|Q2HTJ8_MEDTR (, related) OS=Medicago truncatula GN=Mtr...    62   3e-08
tr|A7PNM3|A7PNM3_VITVI Chromosome chr8 scaffold_23, whole genome...    60   9e-08
tr|A5AF56|A5AF56_VITVI Putative uncharacterized protein OS=Vitis...    60   9e-08
tr|A9TZC3|A9TZC3_PHYPA Predicted protein OS=Physcomitrella paten...    59   3e-07
tr|Q2QNC7|Q2QNC7_ORYSJ Os12g0570500 protein OS=Oryza sativa subs...    56   2e-06
tr|B8BML0|B8BML0_ORYSI Putative uncharacterized protein OS=Oryza...    56   2e-06
tr|A3CIL5|A3CIL5_ORYSJ Putative uncharacterized protein OS=Oryza...    56   2e-06
tr|Q9LZ87|Q9LZ87_ARATH Putative uncharacterized protein T1E22_15...    55   2e-06
tr|A9T1B5|A9T1B5_PHYPA Predicted protein OS=Physcomitrella paten...    54   5e-06
tr|A7PZG7|A7PZG7_VITVI Chromosome chr15 scaffold_40, whole genom...    52   2e-05
tr|A7PSX1|A7PSX1_VITVI Chromosome chr8 scaffold_29, whole genome...    52   2e-05
tr|A9T927|A9T927_PHYPA Predicted protein OS=Physcomitrella paten...    52   3e-05
tr|A9TBM4|A9TBM4_PHYPA Predicted protein OS=Physcomitrella paten...    49   2e-04
tr|A9RUX2|A9RUX2_PHYPA Predicted protein OS=Physcomitrella paten...    47   6e-04
tr|A7Q441|A7Q441_VITVI Chromosome chr13 scaffold_48, whole genom...    47   0.001
tr|A5C2J8|A5C2J8_VITVI Putative uncharacterized protein OS=Vitis...    46   0.002
tr|Q5ZED3|Q5ZED3_ORYSJ cDNA clone:J013069K12, full insert sequen...    45   0.002
tr|B8ADA4|B8ADA4_ORYSI Putative uncharacterized protein OS=Oryza...    45   0.002
tr|A2ZPA3|A2ZPA3_ORYSJ Putative uncharacterized protein OS=Oryza...    45   0.002
tr|Q9M2C6|Q9M2C6_ARATH Putative uncharacterized protein T20K12.2...    45   0.004
tr|Q0WNA4|Q0WNA4_ARATH Putative uncharacterized protein At3g6138...    45   0.004
tr|Q9LQ91|Q9LQ91_ARATH T1N6.6 OS=Arabidopsis thaliana GN=T1N6.6 ...    44   0.007
tr|B3H5G8|B3H5G8_ARATH Uncharacterized protein At1g01695.1 OS=Ar...    44   0.007
tr|A9RKB2|A9RKB2_PHYPA Predicted protein OS=Physcomitrella paten...    44   0.007
tr|O80829|O80829_ARATH Putative uncharacterized protein At2g4590...    44   0.009
tr|Q7Y207|Q7Y207_ARATH Putative uncharacterized protein At4g0044...    43   0.015
tr|Q7XPR6|Q7XPR6_ORYSJ OSJNBa0065O17.15 protein (Putative unchar...    43   0.015
tr|Q56WN7|Q56WN7_ARATH Putative uncharacterized protein At4g0044...    43   0.015
tr|Q0JB34|Q0JB34_ORYSJ Os04g0559200 protein OS=Oryza sativa subs...    43   0.015
tr|Q01H96|Q01H96_ORYSA B0103C08-B0602B01.7 protein OS=Oryza sati...    43   0.015

>tr|Q2HTJ8|Q2HTJ8_MEDTR (, related) OS=Medicago truncatula
            GN=MtrDRAFT_AC150440g13v2 PE=4 SV=1
          Length = 912

 Score = 61.6 bits (148), Expect = 3e-08
 Identities = 37/112 (33%), Positives = 58/112 (51%), Gaps = 5/112 (4%)
 Frame = +1

Query: 10   LLFDCANEVLLDILGPYMNRRVWLSSKVAASMPTG--KDLVNLLWTHISCSLCFHS---G 174
            LLFDC NEVL+++   Y     W+S    +  PT   K ++  +W  +    C+H     
Sbjct: 801  LLFDCINEVLMEVCWHYFGVSPWVSFVNPSIRPTPNMKKVILKVWEGV----CWHVLPLP 856

Query: 175  SQETLENLVTKDLGKGSRWLDTGVEIEAAGLDVERANLDDLIEETLLVL*SQ 330
               TLE +V KD+ +   W+D  ++ E  G D+    L +L+E+T+L L SQ
Sbjct: 857  PPHTLEQIVRKDMARNGTWMDLRLDAEIVGFDMSDTILAELMEDTILSLVSQ 908


>tr|A7PNM3|A7PNM3_VITVI Chromosome chr8 scaffold_23, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00021316001
           PE=4 SV=1
          Length = 725

 Score = 60.1 bits (144), Expect = 9e-08
 Identities = 36/104 (34%), Positives = 56/104 (53%), Gaps = 3/104 (2%)
 Frame = +1

Query: 10  LLFDCANEVLLDILG---PYMNRRVWLSSKVAASMPTGKDLVNLLWTHISCSLCFHSGSQ 180
           LLFD  NEVL++I      Y  R +   S +   MP G  ++  +W +IS    +     
Sbjct: 621 LLFDLINEVLMEIYERSLTYCPRHLSSLSHIRP-MPVGYHVLEEVWANISWYFSWEPDPD 679

Query: 181 ETLENLVTKDLGKGSRWLDTGVEIEAAGLDVERANLDDLIEETL 312
           +TL+ +V++DL KG  W++   E E  GL++E    DDL++E L
Sbjct: 680 QTLDYVVSRDLAKGDGWMNLQFEAECLGLELEDWIFDDLLDELL 723


>tr|A5AF56|A5AF56_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_007129 PE=4 SV=1
          Length = 735

 Score = 60.1 bits (144), Expect = 9e-08
 Identities = 36/104 (34%), Positives = 56/104 (53%), Gaps = 3/104 (2%)
 Frame = +1

Query: 10  LLFDCANEVLLDILG---PYMNRRVWLSSKVAASMPTGKDLVNLLWTHISCSLCFHSGSQ 180
           LLFD  NEVL++I      Y  R +   S +   MP G  ++  +W +IS    +     
Sbjct: 631 LLFDLINEVLMEIYERSLTYCPRHLSSLSHIRP-MPVGYHVLEEVWANISWYFSWEPDPD 689

Query: 181 ETLENLVTKDLGKGSRWLDTGVEIEAAGLDVERANLDDLIEETL 312
           +TL+ +V++DL KG  W++   E E  GL++E    DDL++E L
Sbjct: 690 QTLDYVVSRDLAKGDGWMNLQFEAECLGLELEDWIFDDLLDELL 733


>tr|A9TZC3|A9TZC3_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_172829 PE=4 SV=1
          Length = 1957

 Score = 58.5 bits (140), Expect = 3e-07
 Identities = 38/120 (31%), Positives = 65/120 (54%), Gaps = 2/120 (1%)
 Frame = +1

Query: 4    RHLLFDCANEVLLDILGPYMNRRVWLSSKVAASMPTGKDLVNLLWTHISCSLCFHSGSQE 183
            R L+FDC NE+L   + PY+N + W    V    P+G+ L++ +W  +       +   +
Sbjct: 1749 RRLIFDCMNEILERKMKPYLNPQPW-GIPVVRRKPSGQRLIDEVWDELKDLHWPTTADYD 1807

Query: 184  TLENLVTKD-LGKGSRWLDTGVEIEAAGLDVERANLDDLIEETLLVL*S-QQKRGRMVCE 357
            TL  ++ KD + KG + L+  VE+   G ++ER  L +L+EE +  L S + K  + +CE
Sbjct: 1808 TLYAVLQKDFMRKGFQCLEFSVEVVDVGCELERIVLQELVEEVVQDLISLETKPVKELCE 1867


>tr|Q2QNC7|Q2QNC7_ORYSJ Os12g0570500 protein OS=Oryza sativa subsp.
            japonica GN=Os12g0570500 PE=4 SV=1
          Length = 858

 Score = 55.8 bits (133), Expect = 2e-06
 Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 2/107 (1%)
 Frame = +1

Query: 1    RRHLLFDCANEVLLDILGPYMNRRVWLS--SKVAASMPTGKDLVNLLWTHISCSLCFHSG 174
            RR LLFD  NEVL+DI    +    W S        +P G  ++  +W  +S +L     
Sbjct: 743  RRMLLFDLINEVLMDIYDSSLVTGPWHSRFDSRTRPIPMGSHVLGEVWGKVSYNLSLQWK 802

Query: 175  SQETLENLVTKDLGKGSRWLDTGVEIEAAGLDVERANLDDLIEETLL 315
               T+E++V  D+    RW++   + E   LD+E   +DDL+++ +L
Sbjct: 803  PDLTVEDVVAHDVMMKDRWMNLVYDAECLALDLEDMVVDDLLDDIVL 849


>tr|B8BML0|B8BML0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_38803 PE=4 SV=1
          Length = 487

 Score = 55.8 bits (133), Expect = 2e-06
 Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 2/107 (1%)
 Frame = +1

Query: 1   RRHLLFDCANEVLLDILGPYMNRRVWLS--SKVAASMPTGKDLVNLLWTHISCSLCFHSG 174
           RR LLFD  NEVL+DI    +    W S        +P G  ++  +W  +S +L     
Sbjct: 372 RRMLLFDLINEVLMDIYDSSLVTGPWHSRFDSRTRPIPMGSHVLGEVWGKVSYNLSLQWK 431

Query: 175 SQETLENLVTKDLGKGSRWLDTGVEIEAAGLDVERANLDDLIEETLL 315
              T+E++V  D+    RW++   + E   LD+E   +DDL+++ +L
Sbjct: 432 PDLTVEDVVAHDVMMKDRWMNLVYDAECLALDLEDMVVDDLLDDIVL 478


>tr|A3CIL5|A3CIL5_ORYSJ Putative uncharacterized protein OS=Oryza
            sativa subsp. japonica GN=OsJ_035137 PE=4 SV=1
          Length = 857

 Score = 55.8 bits (133), Expect = 2e-06
 Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 2/107 (1%)
 Frame = +1

Query: 1    RRHLLFDCANEVLLDILGPYMNRRVWLS--SKVAASMPTGKDLVNLLWTHISCSLCFHSG 174
            RR LLFD  NEVL+DI    +    W S        +P G  ++  +W  +S +L     
Sbjct: 742  RRMLLFDLINEVLMDIYDSSLVTGPWHSRFDSRTRPIPMGSHVLGEVWGKVSYNLSLQWK 801

Query: 175  SQETLENLVTKDLGKGSRWLDTGVEIEAAGLDVERANLDDLIEETLL 315
               T+E++V  D+    RW++   + E   LD+E   +DDL+++ +L
Sbjct: 802  PDLTVEDVVAHDVMMKDRWMNLVYDAECLALDLEDMVVDDLLDDIVL 848


>tr|Q9LZ87|Q9LZ87_ARATH Putative uncharacterized protein T1E22_150
            OS=Arabidopsis thaliana GN=T1E22_150 PE=4 SV=1
          Length = 835

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 4/106 (3%)
 Frame = +1

Query: 10   LLFDCANEVLLDILGP---YMNRRVWLSSKVAASMPTGKDLVNLLWTHISCSLCFHS-GS 177
            LLFD  NEVL++I      Y  + +    K+   MP G  ++  +W  ISC L +     
Sbjct: 729  LLFDLINEVLIEIYERSYHYYPKPLSSLCKIHP-MPVGYSVLKEVWVRISCYLRYKPYDE 787

Query: 178  QETLENLVTKDLGKGSRWLDTGVEIEAAGLDVERANLDDLIEETLL 315
            Q++ + ++++DL +   W+D   E E  G++VE    ++L+EE L+
Sbjct: 788  QQSFDKVMSRDLSRDDGWMDLQFESECVGIEVEDLIFEELLEELLI 833


>tr|A9T1B5|A9T1B5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_232164 PE=4 SV=1
          Length = 229

 Score = 54.3 bits (129), Expect = 5e-06
 Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
 Frame = +1

Query: 22  CANEVLLDILGPYMNRRVWLSSKVAASMPTGKDLVNLLWTHISCSLCFHSGSQETLENLV 201
           C NE+L   + PY+N + W  + V   MP G+ L++ +W  +       S + + L  ++
Sbjct: 40  CMNEILERKMSPYLNPQPW-GTPVVRRMPRGQRLIDDVWNELKDMHWPTSAAYDALYAVL 98

Query: 202 TKDLGKGS-RWLDTGVEIEAAGLDVERANLDDLIEE 306
            KD  + S +WLD  VE+   G ++E   L++L+EE
Sbjct: 99  QKDFTRKSFQWLDFSVEVGDVGCELESMPLEELVEE 134


>tr|A7PZG7|A7PZG7_VITVI Chromosome chr15 scaffold_40, whole genome
            shotgun sequence OS=Vitis vinifera GN=GSVIVT00026873001
            PE=4 SV=1
          Length = 896

 Score = 52.4 bits (124), Expect = 2e-05
 Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 2/104 (1%)
 Frame = +1

Query: 10   LLFDCANEVLLDILGPYMNRRVWLSSKVA--ASMPTGKDLVNLLWTHISCSLCFHSGSQE 183
            LLF+C NEVL+++   Y     W S   A    +P  K+ +  +W  +   L        
Sbjct: 761  LLFNCINEVLMEVCERYFGCFSWASIVKANIRPVPNMKNTIREVWEGVHWHL-LPQPLPH 819

Query: 184  TLENLVTKDLGKGSRWLDTGVEIEAAGLDVERANLDDLIEETLL 315
             L+ +V KD+ K   W+D   E +  G+++    L +L+E+T+L
Sbjct: 820  NLDQIVRKDMVKTGTWMDLRFEAQIIGIEMSEVVLQELVEDTIL 863