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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912310
Clone id YMU001_000017_E11
Library
Length 535
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000017_E11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GATCAAGTAGGTCCCAAAGCTGGAGCTTTTTATACGGAGGGCGTCTGCTTCATATGCAAG
AAGCCAGTTGTACCAAAATCAGTCTCATTCTGTTTATTTTCACTAATTAAGTCCCATGGC
TCTTTCTACCCCTCTCTCCATACAGTTGCATGTAAGGGGCCTTCAAAACAGCTGATTTTG
GAATAAGGAGATTGGGAATTTTTAACATATGAAATGCACAGAAGGTTGTATTTGCTCCCA
TCTAGCAGGTGATAAAGAATGGTGCCTCAGAAAGAAGAATGTTGTGTTCCCCGCTTGATA
TGGAGTTTTCTTGTAGAATATGAAGCAACATGTGTGAAACGGTTGGTAATCATCTTATCT
ATCCTCTTTTAGGGGAGATGCTTTCTCGGCCACAGGAGAGCAGGGGCTTTCGGCTGTGTC
CTTTGATTTGTGTGGTGGTAGTTTGTGGGTATTTTTATTGTATCTACCTCCAGTTTGAGG
TGCTTAGTGGAATGATAAGCCAGTGTTGTCAAAAAAAACAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q8BMF4
Definition sp|Q8BMF4|ODP2_MOUSE Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial OS=Mus musculus
Align length 61
Score (bit) 26.6
E-value 0.96
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912310|Adiantum capillus-veneris mRNA, clone:
YMU001_000017_E11.
         (510 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8BMF4|ODP2_MOUSE Dihydrolipoyllysine-residue acetyltransfera...    27   0.96 
sp|P08461|ODP2_RAT Dihydrolipoyllysine-residue acetyltransferase...    27   0.96 
sp|P10515|ODP2_HUMAN Dihydrolipoyllysine-residue acetyltransfera...    27   2.0  
sp|Q9WUL6|M3K14_MOUSE Mitogen-activated protein kinase kinase ki...    32   2.3  
sp|Q8BXJ2|TREF1_MOUSE Transcriptional-regulating factor 1 OS=Mus...    30   6.6  
sp|Q3MHP9|TACT_BOVIN T-cell surface protein tactile OS=Bos tauru...    30   8.6  

>sp|Q8BMF4|ODP2_MOUSE Dihydrolipoyllysine-residue acetyltransferase
           component of pyruvate dehydrogenase complex,
           mitochondrial OS=Mus musculus GN=Dlat PE=1 SV=2
          Length = 642

 Score = 26.6 bits (57), Expect(2) = 0.96
 Identities = 19/61 (31%), Positives = 30/61 (49%)
 Frame = +3

Query: 162 FKTADFGIRRLGIFNI*NAQKVVFAPI*QVIKNGASERRMLCSPLDMEFSCRI*SNMCET 341
           F+   F I  LG+F I N   ++  P   ++  GASE +++  P D E    + S M  T
Sbjct: 553 FQGGTFTISNLGMFGIKNFSAIINPPQACILAIGASEDKLI--PADNEKGFDVASVMSVT 610

Query: 342 V 344
           +
Sbjct: 611 L 611



 Score = 25.4 bits (54), Expect(2) = 0.96
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +2

Query: 26  LFIRRASASYARSQLYQNQSHSVYFH*LSPMALSTPLSIQLHVRGLQ 166
           L +  A++S+  + + QN    V     +P  L TP+    H++GL+
Sbjct: 484 LKVPEANSSWMDTVIRQNHVVDVSVAVSTPAGLITPIVFNAHIKGLE 530


>sp|P08461|ODP2_RAT Dihydrolipoyllysine-residue acetyltransferase
           component of pyruvate dehydrogenase complex,
           mitochondrial OS=Rattus norvegicus GN=Dlat PE=1 SV=3
          Length = 632

 Score = 26.6 bits (57), Expect(2) = 0.96
 Identities = 19/61 (31%), Positives = 30/61 (49%)
 Frame = +3

Query: 162 FKTADFGIRRLGIFNI*NAQKVVFAPI*QVIKNGASERRMLCSPLDMEFSCRI*SNMCET 341
           F+   F I  LG+F I N   ++  P   ++  GASE +++  P D E    + S M  T
Sbjct: 543 FQGGTFTISNLGMFGIKNFSAIINPPQACILAIGASEDKLI--PADNEKGFDVASVMSVT 600

Query: 342 V 344
           +
Sbjct: 601 L 601



 Score = 25.4 bits (54), Expect(2) = 0.96
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +2

Query: 26  LFIRRASASYARSQLYQNQSHSVYFH*LSPMALSTPLSIQLHVRGLQ 166
           L +  A++S+  + + QN    V     +P  L TP+    H++GL+
Sbjct: 474 LKVPEANSSWMDTVIRQNHVVDVSVAVSTPAGLITPIVFNAHIKGLE 520


>sp|P10515|ODP2_HUMAN Dihydrolipoyllysine-residue acetyltransferase
           component of pyruvate dehydrogenase complex,
           mitochondrial OS=Homo sapiens GN=DLAT PE=1 SV=3
          Length = 647

 Score = 26.6 bits (57), Expect(2) = 2.0
 Identities = 19/61 (31%), Positives = 30/61 (49%)
 Frame = +3

Query: 162 FKTADFGIRRLGIFNI*NAQKVVFAPI*QVIKNGASERRMLCSPLDMEFSCRI*SNMCET 341
           F+   F I  LG+F I N   ++  P   ++  GASE +++  P D E    + S M  T
Sbjct: 558 FQGGTFTISNLGMFGIKNFSAIINPPQACILAIGASEDKLV--PADNEKGFDVASMMSVT 615

Query: 342 V 344
           +
Sbjct: 616 L 616



 Score = 24.3 bits (51), Expect(2) = 2.0
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +2

Query: 26  LFIRRASASYARSQLYQNQSHSVYFH*LSPMALSTPLSIQLHVRGLQ 166
           L +  A++S+  + + QN    V     +P  L TP+    H++G++
Sbjct: 489 LKVPEANSSWMDTVIRQNHVVDVSVAVSTPAGLITPIVFNAHIKGVE 535


>sp|Q9WUL6|M3K14_MOUSE Mitogen-activated protein kinase kinase
           kinase 14 OS=Mus musculus GN=Map3k14 PE=1 SV=1
          Length = 942

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 23/53 (43%), Positives = 30/53 (56%)
 Frame = -3

Query: 421 GHSRKPLLSCGRESISPKRG*IR*LPTVSHMLLHILQENSISSGEHNILLSEA 263
           G S+KPL     ES  P RG +  +P V   L+H LQ  S+SSG+ + L S A
Sbjct: 309 GDSQKPLPGPHLESSCPSRGALEKVP-VEEYLVHALQ-GSVSSGQAHSLASLA 359


>sp|Q8BXJ2|TREF1_MOUSE Transcriptional-regulating factor 1 OS=Mus
           musculus GN=Trerf1 PE=2 SV=1
          Length = 1205

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
 Frame = -2

Query: 449 PTNYHHTN---QRTQPKAPALLWPRKHLP 372
           P+  H  N   Q  QP +P+ +WP+ HLP
Sbjct: 454 PSGIHLNNMGSQHQQPPSPSAMWPQMHLP 482


>sp|Q3MHP9|TACT_BOVIN T-cell surface protein tactile OS=Bos taurus
           GN=CD96 PE=2 SV=1
          Length = 570

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = -2

Query: 341 RFTHVASYSTRKLHIKRGTQHSSF*GTILYHLLDGSKYNLLCISYVKN--SQSPYSKIS 171
           ++T+ A YS  ++H+ RG    +F      + L GS  NL C +  K    Q  +SK++
Sbjct: 4   KWTYCAVYSIIQMHLVRGIVEETFGAEEHIYALPGSDVNLTCQTQKKGILVQMQWSKVT 62
tr_hit_id Q2HHG4
Definition tr|Q2HHG4|Q2HHG4_CHAGB Predicted protein OS=Chaetomium globosum
Align length 74
Score (bit) 37.0
E-value 0.56
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912310|Adiantum capillus-veneris mRNA, clone:
YMU001_000017_E11.
         (510 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q2HHG4|Q2HHG4_CHAGB Predicted protein OS=Chaetomium globosum ...    37   0.56 
tr|B3P4C5|B3P4C5_DROER GG18883 OS=Drosophila erecta GN=GG18883 P...    36   1.3  
tr|A7Q7N0|A7Q7N0_VITVI Chromosome undetermined scaffold_60, whol...    35   2.7  
tr|A5B8D3|A5B8D3_VITVI Putative uncharacterized protein OS=Vitis...    35   2.7  

>tr|Q2HHG4|Q2HHG4_CHAGB Predicted protein OS=Chaetomium globosum
           GN=CHGG_00340 PE=4 SV=1
          Length = 314

 Score = 37.0 bits (84), Expect = 0.56
 Identities = 24/74 (32%), Positives = 32/74 (43%)
 Frame = -1

Query: 450 THKLPPHKSKDTAESPCSPVAEKASPLKEDR*DDYQPFHTCCFIFYKKTPYQAGNTTFFF 271
           TH LP H + D   S  SP+  K   L  D     Q F  C +I Y++  Y+A  T  + 
Sbjct: 72  THTLP-HTTTDPGSSSSSPIT-KLDALDPDVATHIQQFGGCMYIAYQEEYYEAARTATYM 129

Query: 270 LRHHSLSPARWEQI 229
             H    P   EQ+
Sbjct: 130 QLHGGALPPGVEQV 143


>tr|B3P4C5|B3P4C5_DROER GG18883 OS=Drosophila erecta GN=GG18883 PE=4
            SV=1
          Length = 2004

 Score = 35.8 bits (81), Expect = 1.3
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +1

Query: 4    QVGPKAGAFYTEGVCFICKKPVVPKSVSFCLFSLIKSHGSFYPSLHT-VACKGPSKQL 174
            ++GP  G    E +C +CK+P  P SV +C    I+ +     ++HT  A KGP   L
Sbjct: 1050 RLGPSPGNRIAESLCVVCKRPASPSSV-YCGEECIRKYAQ--SAIHTHAATKGPDSPL 1104


>tr|A7Q7N0|A7Q7N0_VITVI Chromosome undetermined scaffold_60, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00031924001 PE=4 SV=1
          Length = 858

 Score = 34.7 bits (78), Expect = 2.7
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
 Frame = +3

Query: 333 CETVGNHL--IYPLLGEMLSRPQESRGFRLCPLICVVV--VCGYFYCIYLQFEVLSGMIS 500
           CET   H   ++P+L E+L +  +    +L  L+CV+     GY Y  +   E   GM++
Sbjct: 484 CETASMHAFRVFPVLRELLDKVYKKARCQLQILVCVMARKDAGYGYLKWFA-ETKLGMVT 542

Query: 501 QCC 509
           QCC
Sbjct: 543 QCC 545


>tr|A5B8D3|A5B8D3_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_026177 PE=4 SV=1
          Length = 969

 Score = 34.7 bits (78), Expect = 2.7
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
 Frame = +3

Query: 333 CETVGNHL--IYPLLGEMLSRPQESRGFRLCPLICVVV--VCGYFYCIYLQFEVLSGMIS 500
           CET   H   ++P+L E+L +  +    +L  L+CV+     GY Y  +   E   GM++
Sbjct: 595 CETASMHAFRVFPVLRELLDKVYKKARCQLQILVCVMARKDAGYGYLKWFA-ETKLGMVT 653

Query: 501 QCC 509
           QCC
Sbjct: 654 QCC 656