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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912312
Clone id YMU001_000017_F01
Library
Length 489
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000017_F01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GTAACAAGATTGCTGAGACTGATGTGGAGTATGAACAAGAAAACCTCAACACATATACTG
GAGAGGGGACACACTACAAAAAAAAAGTTGATGCTTTATGGGCATGTGGGCCTAACTCTG
CCAAGCCGGAGTTCGAGCAACCTATGAGGGAAAAGTTCTTCAGCAGGATGCGGCACGCTA
ATAGATTGGATTCTTTTGGATTGACAGAAATAGCCAAAAATAACAACGCGTTAGAGAGGA
GAAAAAATCTCTCCCGGCGCTTCGCCTGTCCAGTAATACTATTGAAGCATGAACATGAGG
AGGCATCAGCGTGTTGGTAAGTCAGACTTTAAAGGAAACATTTTCTGAGGCTGGAGATGA
TTGTCTGGATGTAATCTGGGTATATCCTTTGTATGCAGTTGGTCACTTATCCTACCTATA
AACTGGATTTCGGCATTTTGGGTGCCTCTTGTATTTGCAGGAGGCCATGTGACTGGCACA
CGATATCCC
■■Homology search results ■■ -
sp_hit_id Q99575
Definition sp|Q99575|POP1_HUMAN Ribonucleases P/MRP protein subunit POP1 OS=Homo sapiens
Align length 28
Score (bit) 33.9
E-value 0.41
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912312|Adiantum capillus-veneris mRNA, clone:
YMU001_000017_F01.
         (489 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q99575|POP1_HUMAN Ribonucleases P/MRP protein subunit POP1 OS...    34   0.41 
sp|Q8TC20|CAGE1_HUMAN Cancer-associated gene 1 protein OS=Homo s...    30   5.8  

>sp|Q99575|POP1_HUMAN Ribonucleases P/MRP protein subunit POP1
           OS=Homo sapiens GN=POP1 PE=1 SV=2
          Length = 1024

 Score = 33.9 bits (76), Expect = 0.41
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 400 WSLILPINWISAFWVPLVFAGGHVTGTR 483
           W ++LP  W  AFW+P ++ G  V G +
Sbjct: 618 WDVLLPKGWGMAFWIPFIYRGVRVGGLK 645


>sp|Q8TC20|CAGE1_HUMAN Cancer-associated gene 1 protein OS=Homo
           sapiens GN=CAGE1 PE=2 SV=2
          Length = 777

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 21/100 (21%)
 Frame = +3

Query: 6   KIAETDVEYEQENLNTYTGEGTHYKKKVDALW----------ACGPNSAKPEFEQ----- 140
           +I E  V YE+E     T EG   + ++ + W          AC  N   P++EQ     
Sbjct: 242 EIPEMSVSYEKE----VTAEGVE-RPEIVSTWSSAGISWRSEACRENCEMPDWEQSAESL 296

Query: 141 -PMRE-----KFFSRMRHANRLDSFGLTEIAKNNNALERR 242
            P++E     +   +++H NR     + E+  +N  LE+R
Sbjct: 297 QPVQEDMALNEVLQKLKHTNRKQEVRIQELQCSNLYLEKR 336
tr_hit_id A9RGC6
Definition tr|A9RGC6|A9RGC6_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 30
Score (bit) 49.7
E-value 7.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912312|Adiantum capillus-veneris mRNA, clone:
YMU001_000017_F01.
         (489 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RGC6|A9RGC6_PHYPA Predicted protein OS=Physcomitrella paten...    50   7e-08
tr|A5BQT6|A5BQT6_VITVI Putative uncharacterized protein OS=Vitis...    46   2e-06
tr|A7PJ62|A7PJ62_VITVI Chromosome chr12 scaffold_18, whole genom...    46   2e-06
tr|Q4PL84|Q4PL84_ARATH Putative uncharacterized protein OS=Arabi...    39   6e-06
tr|Q4PL83|Q4PL83_ARATH Putative uncharacterized protein OS=Arabi...    39   6e-06
tr|A7QUH6|A7QUH6_VITVI Chromosome undetermined scaffold_178, who...    45   4e-05
tr|Q0IR50|Q0IR50_ORYSJ Os11g0677500 protein OS=Oryza sativa subs...    38   3e-04
tr|B8BII2|B8BII2_ORYSI Putative uncharacterized protein OS=Oryza...    38   3e-04
tr|Q2QZQ0|Q2QZQ0_ORYSJ Ribonucleases P/MRP protein subunit POP1 ...    38   3e-04
tr|A3CDW7|A3CDW7_ORYSJ Putative uncharacterized protein OS=Oryza...    38   3e-04
tr|A7SAE7|A7SAE7_NEMVE Predicted protein OS=Nematostella vectens...    40   0.058
tr|Q54EV0|Q54EV0_DICDI RNase P protein subunit OS=Dictyostelium ...    35   2.4  
tr|A9USQ4|A9USQ4_MONBE Predicted protein OS=Monosiga brevicollis...    35   2.4  
tr|Q9D4G5|Q9D4G5_MOUSE Putative uncharacterized protein OS=Mus m...    34   3.2  
tr|Q8K205|Q8K205_MOUSE Processing of 1, ribonuclease P/MRP famil...    34   3.2  
tr|Q82R80|Q82R80_STRAW Putative uncharacterized protein OS=Strep...    34   4.2  
tr|Q96F88|Q96F88_HUMAN Processing of 1, ribonuclease P/MRP subun...    34   4.2  
tr|A8K5W9|A8K5W9_HUMAN cDNA FLJ78653, highly similar to Homo sap...    34   4.2  
tr|B8PJC8|B8PJC8_9APHY Predicted protein OS=Postia placenta Mad-...    34   4.2  
tr|A8NQR7|A8NQR7_COPC7 Putative uncharacterized protein OS=Copri...    33   5.5  
tr|B0CVT5|B0CVT5_LACBS Predicted protein OS=Laccaria bicolor (st...    33   9.3  

>tr|A9RGC6|A9RGC6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_65760 PE=4 SV=1
          Length = 1055

 Score = 49.7 bits (117), Expect(2) = 7e-08
 Identities = 20/30 (66%), Positives = 23/30 (76%)
 Frame = +1

Query: 394 CSWSLILPINWISAFWVPLVFAGGHVTGTR 483
           C +SLI+PI W+ AFWVPLVFAGG   G R
Sbjct: 502 CGFSLIMPIAWVRAFWVPLVFAGGRAIGLR 531



 Score = 30.4 bits (67), Expect(2) = 7e-08
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +3

Query: 138 QPMREKFFSRMRHANRLDSFGLTEIAKNNNALERRKNLS-RRFACPVILLKHEHEEASAC 314
           +P+ EK  S  RH  RL    L + +++   +++   ++     C ++++KH H   SAC
Sbjct: 446 KPLSEKDLSIKRHKRRLSYIRLDDTSED---IQQESTIAGENSKCHILVIKHAHAMPSAC 502


>tr|A5BQT6|A5BQT6_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_012793 PE=4 SV=1
          Length = 743

 Score = 45.8 bits (107), Expect(2) = 2e-06
 Identities = 16/28 (57%), Positives = 21/28 (75%)
 Frame = +1

Query: 400 WSLILPINWISAFWVPLVFAGGHVTGTR 483
           WS+ILP++W+ AFW+PLV  G H  G R
Sbjct: 459 WSIILPLSWVKAFWIPLVSNGAHAIGLR 486



 Score = 29.6 bits (65), Expect(2) = 2e-06
 Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
 Frame = +3

Query: 63  EGTHYKKKVDA-LWACGPNSAKPEFEQPMREKFFSRMRHANRLDSFGLTEIAKNNNALER 239
           E T  K   D  LW      A+  F  P+ E      +H  RL  F L++   + + +  
Sbjct: 382 ENTSLKGNQDLDLW-----DARNGFSPPVEENVLCMEKHHQRLAFFCLSD---SQSGILN 433

Query: 240 RKNLSRRFACPVILLKHEHEEASACW 317
             + ++  +CP++LLK  +++    W
Sbjct: 434 TSSDAQHGSCPILLLKSNNQKGMIGW 459


>tr|A7PJ62|A7PJ62_VITVI Chromosome chr12 scaffold_18, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00018608001
           PE=4 SV=1
          Length = 806

 Score = 45.8 bits (107), Expect(2) = 2e-06
 Identities = 16/28 (57%), Positives = 21/28 (75%)
 Frame = +1

Query: 400 WSLILPINWISAFWVPLVFAGGHVTGTR 483
           WS+ILP++W+ AFW+PLV  G H  G R
Sbjct: 471 WSIILPLSWVKAFWIPLVSNGAHAIGLR 498



 Score = 29.3 bits (64), Expect(2) = 2e-06
 Identities = 15/66 (22%), Positives = 32/66 (48%)
 Frame = +3

Query: 120 AKPEFEQPMREKFFSRMRHANRLDSFGLTEIAKNNNALERRKNLSRRFACPVILLKHEHE 299
           A+  F  P+ E      +H  RL  F L++   + + +    + ++  +CP++LLK  ++
Sbjct: 409 ARNGFSPPVEENVLCMEKHHQRLAFFCLSD---SQSGILNTSSDAQHGSCPILLLKSNNQ 465

Query: 300 EASACW 317
           +    W
Sbjct: 466 KGMIGW 471


>tr|Q4PL84|Q4PL84_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana GN=At2g47290 PE=2 SV=1
          Length = 826

 Score = 38.9 bits (89), Expect(2) = 6e-06
 Identities = 15/28 (53%), Positives = 17/28 (60%)
 Frame = +1

Query: 400 WSLILPINWISAFWVPLVFAGGHVTGTR 483
           WSLILP++WI  FW   V  G H  G R
Sbjct: 490 WSLILPLSWIKVFWNAFVSKGAHAIGQR 517



 Score = 34.7 bits (78), Expect(2) = 6e-06
 Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
 Frame = +3

Query: 39  ENLNTYTG-EGTHYKKKVDALWACGPNSAKPEFEQPMREKFFSRMRHANRLDSFGLTEIA 215
           E++ T T  E   + +  + LW      A  E   P  E      +H +R+DS  L + A
Sbjct: 403 ESVETTTNTEAETFPEVFNCLW-----DANSELTPPEEENMLCWEKHQSRMDSLCLDDPA 457

Query: 216 KNNNALERRKNLSRRFACPVILLKHE 293
                +  R   SR  +CP++LLKH+
Sbjct: 458 AEVPKVSSRPRSSR--SCPLLLLKHK 481


>tr|Q4PL83|Q4PL83_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana GN=At2g47290 PE=2 SV=1
          Length = 659

 Score = 38.9 bits (89), Expect(2) = 6e-06
 Identities = 15/28 (53%), Positives = 17/28 (60%)
 Frame = +1

Query: 400 WSLILPINWISAFWVPLVFAGGHVTGTR 483
           WSLILP++WI  FW   V  G H  G R
Sbjct: 323 WSLILPLSWIKVFWNAFVSKGAHAIGQR 350



 Score = 34.7 bits (78), Expect(2) = 6e-06
 Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
 Frame = +3

Query: 39  ENLNTYTG-EGTHYKKKVDALWACGPNSAKPEFEQPMREKFFSRMRHANRLDSFGLTEIA 215
           E++ T T  E   + +  + LW      A  E   P  E      +H +R+DS  L + A
Sbjct: 236 ESVETTTNTEAETFPEVFNCLW-----DANSELTPPEEENMLCWEKHQSRMDSLCLDDPA 290

Query: 216 KNNNALERRKNLSRRFACPVILLKHE 293
                +  R   SR  +CP++LLKH+
Sbjct: 291 AEVPKVSSRPRSSR--SCPLLLLKHK 314


>tr|A7QUH6|A7QUH6_VITVI Chromosome undetermined scaffold_178, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00006851001 PE=4 SV=1
          Length = 634

 Score = 45.4 bits (106), Expect(2) = 4e-05
 Identities = 16/28 (57%), Positives = 21/28 (75%)
 Frame = +1

Query: 400 WSLILPINWISAFWVPLVFAGGHVTGTR 483
           WS+ILP++W+ AFW+PLV  G H  G R
Sbjct: 371 WSIILPLSWVKAFWIPLVNNGAHAIGLR 398



 Score = 25.4 bits (54), Expect(2) = 4e-05
 Identities = 13/59 (22%), Positives = 28/59 (47%)
 Frame = +3

Query: 141 PMREKFFSRMRHANRLDSFGLTEIAKNNNALERRKNLSRRFACPVILLKHEHEEASACW 317
           P+ E      +H   L  F L+E   + + +    +  +  +CP++LLK+ +++    W
Sbjct: 316 PVEEDVLCMEKHHQHLGFFCLSE---SQSGILNTSSDVQHGSCPILLLKNNNQKGMIGW 371


>tr|Q0IR50|Q0IR50_ORYSJ Os11g0677500 protein OS=Oryza sativa subsp.
           japonica GN=Os11g0677500 PE=4 SV=1
          Length = 2381

 Score = 38.1 bits (87), Expect(2) = 3e-04
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +1

Query: 400 WSLILPINWISAFWVPLVFAGGHVTGTR 483
           WS+ILP++W+  FW  LV  G H  G R
Sbjct: 341 WSVILPLSWVKPFWFYLVSHGAHAIGLR 368



 Score = 29.6 bits (65), Expect(2) = 3e-04
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +3

Query: 141 PMREKFFSRMRHANRLDSFGLTEIAKNNNALERRKNLSRRFACPVILLKH 290
           P+ EK     +H  R+  F L          + + ++ R  +CPVILLKH
Sbjct: 284 PVDEKILCMEKHHRRMKFFCLDSGNDQGQTSQEKDSIGR--SCPVILLKH 331


>tr|B8BII2|B8BII2_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_36989 PE=4 SV=1
          Length = 914

 Score = 38.1 bits (87), Expect(2) = 3e-04
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +1

Query: 400 WSLILPINWISAFWVPLVFAGGHVTGTR 483
           WS+ILP++W+  FW  LV  G H  G R
Sbjct: 503 WSVILPLSWVKPFWFYLVSHGAHAIGLR 530



 Score = 29.6 bits (65), Expect(2) = 3e-04
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +3

Query: 141 PMREKFFSRMRHANRLDSFGLTEIAKNNNALERRKNLSRRFACPVILLKH 290
           P+ EK     +H  R+  F L          + + ++ R  +CPVILLKH
Sbjct: 446 PVDEKILCMEKHHRRMKFFCLDSGNDQGQTSQEKDSIGR--SCPVILLKH 493


>tr|Q2QZQ0|Q2QZQ0_ORYSJ Ribonucleases P/MRP protein subunit POP1
           containing protein, expressed OS=Oryza sativa subsp.
           japonica GN=LOC_Os11g45250 PE=4 SV=1
          Length = 856

 Score = 38.1 bits (87), Expect(2) = 3e-04
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +1

Query: 400 WSLILPINWISAFWVPLVFAGGHVTGTR 483
           WS+ILP++W+  FW  LV  G H  G R
Sbjct: 503 WSVILPLSWVKPFWFYLVSHGAHAIGLR 530



 Score = 29.6 bits (65), Expect(2) = 3e-04
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +3

Query: 141 PMREKFFSRMRHANRLDSFGLTEIAKNNNALERRKNLSRRFACPVILLKH 290
           P+ EK     +H  R+  F L          + + ++ R  +CPVILLKH
Sbjct: 446 PVDEKILCMEKHHRRMKFFCLDSGNDQGQTSQEKDSIGR--SCPVILLKH 493


>tr|A3CDW7|A3CDW7_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_033489 PE=4 SV=1
          Length = 825

 Score = 38.1 bits (87), Expect(2) = 3e-04
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +1

Query: 400 WSLILPINWISAFWVPLVFAGGHVTGTR 483
           WS+ILP++W+  FW  LV  G H  G R
Sbjct: 385 WSVILPLSWVKPFWFYLVSHGAHAIGLR 412



 Score = 29.6 bits (65), Expect(2) = 3e-04
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +3

Query: 141 PMREKFFSRMRHANRLDSFGLTEIAKNNNALERRKNLSRRFACPVILLKH 290
           P+ EK     +H  R+  F L          + + ++ R  +CPVILLKH
Sbjct: 328 PVDEKILCMEKHHRRMKFFCLDSGNDQGQTSQEKDSIGR--SCPVILLKH 375