BP912314
Clone id YMU001_000017_F04
Library
Length 342
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000017_F04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
TTTTTTTATTGTTTATTTTTTTAATTTCAACCCTGNAACTTCACTGGGAATTAACTCAGT
TATGTGAAGGGAGGAAATCCGATATTAACAAATTCTTTTGAAGGCAGACCACACTAAACC
CACCTGGGAATTGTACATTTTCTTCATTACAGCAGTTCTCTTTCACTTTTCTTCCTATTT
GAAAAGTATCTTCTCACTGAGAACATGAAGACGCCTTCACCTGCAGCATAGTTTCGACCT
TGCATGCAAACAGATAGGAGTATTGTCAGACTTACCCATTCAATTTCTCTTCTATAAAAC
TGCCAAGTCCATTATGTGCAGCTGACCGAGATCCAGGAACGC
■■Homology search results ■■ -
sp_hit_id Q6D974
Definition sp|Q6D974|GCSP_ERWCT Glycine dehydrogenase [decarboxylating] OS=Erwinia carotovora subsp. atroseptica
Align length 62
Score (bit) 33.9
E-value 0.26
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912314|Adiantum capillus-veneris mRNA, clone:
YMU001_000017_F04.
(342 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q6D974|GCSP_ERWCT Glycine dehydrogenase [decarboxylating] OS=... 34 0.26
sp|Q9HTX7|GCSP2_PSEAE Glycine dehydrogenase [decarboxylating] 2 ... 34 0.26
sp|Q666R7|GCSP_YERPS Glycine dehydrogenase [decarboxylating] OS=... 33 0.58
sp|A4TIA7|GCSP_YERPP Glycine dehydrogenase [decarboxylating] OS=... 33 0.58
sp|Q1CEZ9|GCSP_YERPN Glycine dehydrogenase [decarboxylating] OS=... 33 0.58
sp|Q8ZHI8|GCSP_YERPE Glycine dehydrogenase [decarboxylating] OS=... 33 0.58
sp|Q1CB42|GCSP_YERPA Glycine dehydrogenase [decarboxylating] OS=... 33 0.58
sp|A7FF21|GCSP_YERP3 Glycine dehydrogenase [decarboxylating] OS=... 33 0.58
sp|A1JPN3|GCSP_YERE8 Glycine dehydrogenase [decarboxylating] OS=... 33 0.58
sp|Q2NRF0|GCSP_SODGM Glycine dehydrogenase [decarboxylating] OS=... 32 0.75
sp|Q3YXW7|GCSP_SHISS Glycine dehydrogenase [decarboxylating] OS=... 31 1.7
sp|Q83QA2|GCSP_SHIFL Glycine dehydrogenase [decarboxylating] OS=... 31 1.7
sp|Q0T0Z5|GCSP_SHIF8 Glycine dehydrogenase [decarboxylating] OS=... 31 1.7
sp|Q32BW5|GCSP_SHIDS Glycine dehydrogenase [decarboxylating] OS=... 31 1.7
sp|Q31WG4|GCSP_SHIBS Glycine dehydrogenase [decarboxylating] OS=... 31 1.7
sp|A8GIR9|GCSP_SERP5 Glycine dehydrogenase [decarboxylating] OS=... 31 1.7
sp|Q8ZM76|GCSP_SALTY Glycine dehydrogenase [decarboxylating] OS=... 31 1.7
sp|Q8Z3X0|GCSP_SALTI Glycine dehydrogenase [decarboxylating] OS=... 31 1.7
sp|A9N3N1|GCSP_SALPB Glycine dehydrogenase [decarboxylating] OS=... 31 1.7
sp|A9MRH2|GCSP_SALAR Glycine dehydrogenase [decarboxylating] OS=... 31 1.7
sp|A6TDR5|GCSP_KLEP7 Glycine dehydrogenase [decarboxylating] OS=... 31 1.7
sp|Q1R7C8|GCSP_ECOUT Glycine dehydrogenase [decarboxylating] OS=... 31 1.7
sp|P33195|GCSP_ECOLI Glycine dehydrogenase [decarboxylating] OS=... 31 1.7
sp|Q8FE67|GCSP_ECOL6 Glycine dehydrogenase [decarboxylating] OS=... 31 1.7
sp|Q0TDU9|GCSP_ECOL5 Glycine dehydrogenase [decarboxylating] OS=... 31 1.7
sp|A1AF92|GCSP_ECOK1 Glycine dehydrogenase [decarboxylating] OS=... 31 1.7
sp|A8A444|GCSP_ECOHS Glycine dehydrogenase [decarboxylating] OS=... 31 1.7
sp|Q8XD33|GCSP_ECO57 Glycine dehydrogenase [decarboxylating] OS=... 31 1.7
sp|A7ZR12|GCSP_ECO24 Glycine dehydrogenase [decarboxylating] OS=... 31 1.7
sp|A1S965|GCSP_SHEAM Glycine dehydrogenase [decarboxylating] OS=... 30 2.9

>sp|Q6D974|GCSP_ERWCT Glycine dehydrogenase [decarboxylating]
OS=Erwinia carotovora subsp. atroseptica GN=gcvP PE=3
SV=1
Length = 957

Score = 33.9 bits (76), Expect = 0.26
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Frame = -2

Query: 296 YRREIE----W-VSLTILLSVCMQGRNYAAGEGVFMFSVRRYFSNRKKSERELL**RKCT 132
YR+ IE W V LT +VCMQ + A GE + ++RRY +R ++ R L C
Sbjct: 545 YRQMIEQLSGWLVQLTGYDAVCMQPNSGAQGEYAGLLAIRRYHESRNEAGRHL-----CL 599

Query: 131 IP 126
IP
Sbjct: 600 IP 601


>sp|Q9HTX7|GCSP2_PSEAE Glycine dehydrogenase [decarboxylating] 2
OS=Pseudomonas aeruginosa GN=gcvP2 PE=3 SV=1
Length = 958

Score = 33.9 bits (76), Expect = 0.26
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Frame = -2

Query: 296 YRREIE----WV-SLTILLSVCMQGRNYAAGEGVFMFSVRRYFSNRKKSERELL**RKCT 132
YRR I+ W+ ++T ++CMQ + A GE + ++RRY +R S+R++ C
Sbjct: 544 YRRMIDELEAWLRAITGFDAICMQPNSGAQGEYAGLLAIRRYHQSRGDSQRDI-----CL 598

Query: 131 IP 126
IP
Sbjct: 599 IP 600


>sp|Q666R7|GCSP_YERPS Glycine dehydrogenase [decarboxylating]
OS=Yersinia pseudotuberculosis GN=gcvP PE=3 SV=1
Length = 959

Score = 32.7 bits (73), Expect = 0.58
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = -2

Query: 281 EW-VSLTILLSVCMQGRNYAAGEGVFMFSVRRYFSNRKKSERELL**RKCTIP 126
+W V LT +VCMQ + A GE + ++RRY +R ++ R + C IP
Sbjct: 554 QWLVQLTGYDAVCMQPNSGAQGEYAGLLAIRRYHESRNQANRHI-----CLIP 601


>sp|A4TIA7|GCSP_YERPP Glycine dehydrogenase [decarboxylating]
OS=Yersinia pestis (strain Pestoides F) GN=gcvP PE=3
SV=1
Length = 959

Score = 32.7 bits (73), Expect = 0.58
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = -2

Query: 281 EW-VSLTILLSVCMQGRNYAAGEGVFMFSVRRYFSNRKKSERELL**RKCTIP 126
+W V LT +VCMQ + A GE + ++RRY +R ++ R + C IP
Sbjct: 554 QWLVQLTGYDAVCMQPNSGAQGEYAGLLAIRRYHESRNQANRHI-----CLIP 601


>sp|Q1CEZ9|GCSP_YERPN Glycine dehydrogenase [decarboxylating]
OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=gcvP
PE=3 SV=1
Length = 959

Score = 32.7 bits (73), Expect = 0.58
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = -2

Query: 281 EW-VSLTILLSVCMQGRNYAAGEGVFMFSVRRYFSNRKKSERELL**RKCTIP 126
+W V LT +VCMQ + A GE + ++RRY +R ++ R + C IP
Sbjct: 554 QWLVQLTGYDAVCMQPNSGAQGEYAGLLAIRRYHESRNQANRHI-----CLIP 601


>sp|Q8ZHI8|GCSP_YERPE Glycine dehydrogenase [decarboxylating]
OS=Yersinia pestis GN=gcvP PE=3 SV=3
Length = 959

Score = 32.7 bits (73), Expect = 0.58
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = -2

Query: 281 EW-VSLTILLSVCMQGRNYAAGEGVFMFSVRRYFSNRKKSERELL**RKCTIP 126
+W V LT +VCMQ + A GE + ++RRY +R ++ R + C IP
Sbjct: 554 QWLVQLTGYDAVCMQPNSGAQGEYAGLLAIRRYHESRNQANRHI-----CLIP 601


>sp|Q1CB42|GCSP_YERPA Glycine dehydrogenase [decarboxylating]
OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=gcvP
PE=3 SV=1
Length = 959

Score = 32.7 bits (73), Expect = 0.58
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = -2

Query: 281 EW-VSLTILLSVCMQGRNYAAGEGVFMFSVRRYFSNRKKSERELL**RKCTIP 126
+W V LT +VCMQ + A GE + ++RRY +R ++ R + C IP
Sbjct: 554 QWLVQLTGYDAVCMQPNSGAQGEYAGLLAIRRYHESRNQANRHI-----CLIP 601


>sp|A7FF21|GCSP_YERP3 Glycine dehydrogenase [decarboxylating]
OS=Yersinia pseudotuberculosis serotype O:1b (strain IP
31758) GN=gcvP PE=3 SV=1
Length = 959

Score = 32.7 bits (73), Expect = 0.58
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = -2

Query: 281 EW-VSLTILLSVCMQGRNYAAGEGVFMFSVRRYFSNRKKSERELL**RKCTIP 126
+W V LT +VCMQ + A GE + ++RRY +R ++ R + C IP
Sbjct: 554 QWLVQLTGYDAVCMQPNSGAQGEYAGLLAIRRYHESRNQANRHI-----CLIP 601


>sp|A1JPN3|GCSP_YERE8 Glycine dehydrogenase [decarboxylating]
OS=Yersinia enterocolitica serotype O:8 / biotype 1B
(strain 8081) GN=gcvP PE=3 SV=1
Length = 959

Score = 32.7 bits (73), Expect = 0.58
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = -2

Query: 281 EW-VSLTILLSVCMQGRNYAAGEGVFMFSVRRYFSNRKKSERELL**RKCTIP 126
+W V LT +VCMQ + A GE + ++RRY +R ++ R + C IP
Sbjct: 554 QWLVQLTGYDAVCMQPNSGAQGEYAGLLAIRRYHESRNQASRHI-----CLIP 601


>sp|Q2NRF0|GCSP_SODGM Glycine dehydrogenase [decarboxylating]
OS=Sodalis glossinidius (strain morsitans) GN=gcvP PE=3
SV=1
Length = 953

Score = 32.3 bits (72), Expect = 0.75
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = -2

Query: 275 VSLTILLSVCMQGRNYAAGEGVFMFSVRRYFSNRKKSERELL**RKCTIP 126
+ LT ++CMQ + A GE + ++RRY +R + ER + C IP
Sbjct: 554 IQLTGYDALCMQPNSGAQGEYAGLLAIRRYHESRNQGERHI-----CLIP 598


tr_hit_id Q02EF1
Definition tr|Q02EF1|Q02EF1_PSEAB Glycine cleavage system protein P1 OS=Pseudomonas aeruginosa (strain UCBPP-PA14)
Align length 62
Score (bit) 33.9
E-value 4.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912314|Adiantum capillus-veneris mRNA, clone:
YMU001_000017_F04.
(342 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q02EF1|Q02EF1_PSEAB Glycine cleavage system protein P1 OS=Pse... 34 4.2
tr|A6VDY9|A6VDY9_PSEA7 Glycine dehydrogenase OS=Pseudomonas aeru... 34 4.2
tr|B7V5A3|B7V5A3_PSEAE Glycine cleavage system protein P1 OS=Pse... 34 4.2
tr|A3LIR5|A3LIR5_PSEAE Glycine cleavage system protein P1 OS=Pse... 34 4.2
tr|A3L251|A3L251_PSEAE Glycine cleavage system protein P1 OS=Pse... 34 4.2
tr|B6X417|B6X417_9ENTR Putative uncharacterized protein OS=Provi... 33 7.1
tr|B2K0Q3|B2K0Q3_YERPB Glycine dehydrogenase OS=Yersinia pseudot... 33 9.3
tr|B1JNS8|B1JNS8_YERPY Glycine dehydrogenase OS=Yersinia pseudot... 33 9.3
tr|A9R4K8|A9R4K8_YERPG Glycine dehydrogenase OS=Yersinia pestis ... 33 9.3
tr|B0HVQ3|B0HVQ3_YERPE Glycine dehydrogenase OS=Yersinia pestis ... 33 9.3
tr|B0HIP9|B0HIP9_YERPE Glycine dehydrogenase OS=Yersinia pestis ... 33 9.3
tr|B0H6K8|B0H6K8_YERPE Glycine dehydrogenase OS=Yersinia pestis ... 33 9.3
tr|B0GNC0|B0GNC0_YERPE Glycine dehydrogenase OS=Yersinia pestis ... 33 9.3
tr|B0GFK8|B0GFK8_YERPE Glycine dehydrogenase OS=Yersinia pestis ... 33 9.3
tr|A9ZVX0|A9ZVX0_YERPE Glycine dehydrogenase OS=Yersinia pestis ... 33 9.3
tr|A9Z733|A9Z733_YERPE Glycine dehydrogenase OS=Yersinia pestis ... 33 9.3
tr|A6BTX6|A6BTX6_YERPE Glycine dehydrogenase OS=Yersinia pestis ... 33 9.3

>tr|Q02EF1|Q02EF1_PSEAB Glycine cleavage system protein P1
OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=gcvP1
PE=4 SV=1
Length = 958

Score = 33.9 bits (76), Expect = 4.2
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Frame = -2

Query: 296 YRREIE----WV-SLTILLSVCMQGRNYAAGEGVFMFSVRRYFSNRKKSERELL**RKCT 132
YRR I+ W+ ++T ++CMQ + A GE + ++RRY +R S+R++ C
Sbjct: 544 YRRMIDELEAWLRAITGFDAICMQPNSGAQGEYAGLLAIRRYHQSRGDSQRDI-----CL 598

Query: 131 IP 126
IP
Sbjct: 599 IP 600


>tr|A6VDY9|A6VDY9_PSEA7 Glycine dehydrogenase OS=Pseudomonas
aeruginosa (strain PA7) GN=gcvP1 PE=4 SV=1
Length = 1000

Score = 33.9 bits (76), Expect = 4.2
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Frame = -2

Query: 296 YRREIE----WV-SLTILLSVCMQGRNYAAGEGVFMFSVRRYFSNRKKSERELL**RKCT 132
YRR I+ W+ ++T ++CMQ + A GE + ++RRY +R S+R++ C
Sbjct: 586 YRRMIDELEAWLRAITGFDAICMQPNSGAQGEYAGLLAIRRYHQSRGDSQRDI-----CL 640

Query: 131 IP 126
IP
Sbjct: 641 IP 642


>tr|B7V5A3|B7V5A3_PSEAE Glycine cleavage system protein P1
OS=Pseudomonas aeruginosa LESB58 GN=gcvP1 PE=4 SV=1
Length = 958

Score = 33.9 bits (76), Expect = 4.2
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Frame = -2

Query: 296 YRREIE----WV-SLTILLSVCMQGRNYAAGEGVFMFSVRRYFSNRKKSERELL**RKCT 132
YRR I+ W+ ++T ++CMQ + A GE + ++RRY +R S+R++ C
Sbjct: 544 YRRMIDELEAWLRAITGFDAICMQPNSGAQGEYAGLLAIRRYHQSRGDSQRDI-----CL 598

Query: 131 IP 126
IP
Sbjct: 599 IP 600


>tr|A3LIR5|A3LIR5_PSEAE Glycine cleavage system protein P1
OS=Pseudomonas aeruginosa 2192 GN=PA2G_04734 PE=4 SV=1
Length = 958

Score = 33.9 bits (76), Expect = 4.2
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Frame = -2

Query: 296 YRREIE----WV-SLTILLSVCMQGRNYAAGEGVFMFSVRRYFSNRKKSERELL**RKCT 132
YRR I+ W+ ++T ++CMQ + A GE + ++RRY +R S+R++ C
Sbjct: 544 YRRMIDELEAWLRAITGFDAICMQPNSGAQGEYAGLLAIRRYHQSRGDSQRDI-----CL 598

Query: 131 IP 126
IP
Sbjct: 599 IP 600


>tr|A3L251|A3L251_PSEAE Glycine cleavage system protein P1
OS=Pseudomonas aeruginosa C3719 GN=PACG_04206 PE=4 SV=1
Length = 960

Score = 33.9 bits (76), Expect = 4.2
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Frame = -2

Query: 296 YRREIE----WV-SLTILLSVCMQGRNYAAGEGVFMFSVRRYFSNRKKSERELL**RKCT 132
YRR I+ W+ ++T ++CMQ + A GE + ++RRY +R S+R++ C
Sbjct: 546 YRRMIDELEAWLRAITGFDAICMQPNSGAQGEYAGLLAIRRYHQSRGDSQRDI-----CL 600

Query: 131 IP 126
IP
Sbjct: 601 IP 602


>tr|B6X417|B6X417_9ENTR Putative uncharacterized protein
OS=Providencia rustigianii DSM 4541 GN=PROVRUST_01959
PE=4 SV=1
Length = 968

Score = 33.1 bits (74), Expect = 7.1
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Frame = -2

Query: 302 QFYRREIE----W-VSLTILLSVCMQGRNYAAGEGVFMFSVRRYFSNRKKSERELL**RK 138
Q Y + IE W V LT +VCMQ + A GE + ++RRY +R + +R +
Sbjct: 553 QGYHQMIEQLSHWLVQLTGYDAVCMQPNSGAQGEYAGLLAIRRYHESRNEGDRNI----- 607

Query: 137 CTIP 126
C IP
Sbjct: 608 CLIP 611


>tr|B2K0Q3|B2K0Q3_YERPB Glycine dehydrogenase OS=Yersinia
pseudotuberculosis serotype IB (strain PB1/+)
GN=YPTS_3311 PE=4 SV=1
Length = 959

Score = 32.7 bits (73), Expect = 9.3
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = -2

Query: 281 EW-VSLTILLSVCMQGRNYAAGEGVFMFSVRRYFSNRKKSERELL**RKCTIP 126
+W V LT +VCMQ + A GE + ++RRY +R ++ R + C IP
Sbjct: 554 QWLVQLTGYDAVCMQPNSGAQGEYAGLLAIRRYHESRNQANRHI-----CLIP 601


>tr|B1JNS8|B1JNS8_YERPY Glycine dehydrogenase OS=Yersinia
pseudotuberculosis serotype O:3 (strain YPIII)
GN=YPK_0869 PE=4 SV=1
Length = 959

Score = 32.7 bits (73), Expect = 9.3
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = -2

Query: 281 EW-VSLTILLSVCMQGRNYAAGEGVFMFSVRRYFSNRKKSERELL**RKCTIP 126
+W V LT +VCMQ + A GE + ++RRY +R ++ R + C IP
Sbjct: 554 QWLVQLTGYDAVCMQPNSGAQGEYAGLLAIRRYHESRNQANRHI-----CLIP 601


>tr|A9R4K8|A9R4K8_YERPG Glycine dehydrogenase OS=Yersinia pestis bv.
Antiqua (strain Angola) GN=gcvP PE=4 SV=1
Length = 959

Score = 32.7 bits (73), Expect = 9.3
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = -2

Query: 281 EW-VSLTILLSVCMQGRNYAAGEGVFMFSVRRYFSNRKKSERELL**RKCTIP 126
+W V LT +VCMQ + A GE + ++RRY +R ++ R + C IP
Sbjct: 554 QWLVQLTGYDAVCMQPNSGAQGEYAGLLAIRRYHESRNQANRHI-----CLIP 601


>tr|B0HVQ3|B0HVQ3_YERPE Glycine dehydrogenase OS=Yersinia pestis
biovar Antiqua str. E1979001 GN=gcvP PE=4 SV=1
Length = 959

Score = 32.7 bits (73), Expect = 9.3
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = -2

Query: 281 EW-VSLTILLSVCMQGRNYAAGEGVFMFSVRRYFSNRKKSERELL**RKCTIP 126
+W V LT +VCMQ + A GE + ++RRY +R ++ R + C IP
Sbjct: 554 QWLVQLTGYDAVCMQPNSGAQGEYAGLLAIRRYHESRNQANRHI-----CLIP 601