BP912314 |
Clone id |
YMU001_000017_F04 |
Library |
YMU01 |
Length |
342 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000017_F04. |
Accession |
BP912314 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL3879Contig1 |
Sequence |
TTTTTTTATTGTTTATTTTTTTAATTTCAACCCTGNAACTTCACTGGGAATTAACTCAGT TATGTGAAGGGAGGAAATCCGATATTAACAAATTCTTTTGAAGGCAGACCACACTAAACC CACCTGGGAATTGTACATTTTCTTCATTACAGCAGTTCTCTTTCACTTTTCTTCCTATTT GAAAAGTATCTTCTCACTGAGAACATGAAGACGCCTTCACCTGCAGCATAGTTTCGACCT TGCATGCAAACAGATAGGAGTATTGTCAGACTTACCCATTCAATTTCTCTTCTATAAAAC TGCCAAGTCCATTATGTGCAGCTGACCGAGATCCAGGAACGC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q6D974 |
Definition |
sp|Q6D974|GCSP_ERWCT Glycine dehydrogenase [decarboxylating] OS=Erwinia carotovora subsp. atroseptica |
Align length |
62 |
Score (bit) |
33.9 |
E-value |
0.26 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP912314|Adiantum capillus-veneris mRNA, clone: YMU001_000017_F04. (342 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q6D974|GCSP_ERWCT Glycine dehydrogenase [decarboxylating] OS=... 34 0.26 sp|Q9HTX7|GCSP2_PSEAE Glycine dehydrogenase [decarboxylating] 2 ... 34 0.26 sp|Q666R7|GCSP_YERPS Glycine dehydrogenase [decarboxylating] OS=... 33 0.58 sp|A4TIA7|GCSP_YERPP Glycine dehydrogenase [decarboxylating] OS=... 33 0.58 sp|Q1CEZ9|GCSP_YERPN Glycine dehydrogenase [decarboxylating] OS=... 33 0.58 sp|Q8ZHI8|GCSP_YERPE Glycine dehydrogenase [decarboxylating] OS=... 33 0.58 sp|Q1CB42|GCSP_YERPA Glycine dehydrogenase [decarboxylating] OS=... 33 0.58 sp|A7FF21|GCSP_YERP3 Glycine dehydrogenase [decarboxylating] OS=... 33 0.58 sp|A1JPN3|GCSP_YERE8 Glycine dehydrogenase [decarboxylating] OS=... 33 0.58 sp|Q2NRF0|GCSP_SODGM Glycine dehydrogenase [decarboxylating] OS=... 32 0.75 sp|Q3YXW7|GCSP_SHISS Glycine dehydrogenase [decarboxylating] OS=... 31 1.7 sp|Q83QA2|GCSP_SHIFL Glycine dehydrogenase [decarboxylating] OS=... 31 1.7 sp|Q0T0Z5|GCSP_SHIF8 Glycine dehydrogenase [decarboxylating] OS=... 31 1.7 sp|Q32BW5|GCSP_SHIDS Glycine dehydrogenase [decarboxylating] OS=... 31 1.7 sp|Q31WG4|GCSP_SHIBS Glycine dehydrogenase [decarboxylating] OS=... 31 1.7 sp|A8GIR9|GCSP_SERP5 Glycine dehydrogenase [decarboxylating] OS=... 31 1.7 sp|Q8ZM76|GCSP_SALTY Glycine dehydrogenase [decarboxylating] OS=... 31 1.7 sp|Q8Z3X0|GCSP_SALTI Glycine dehydrogenase [decarboxylating] OS=... 31 1.7 sp|A9N3N1|GCSP_SALPB Glycine dehydrogenase [decarboxylating] OS=... 31 1.7 sp|A9MRH2|GCSP_SALAR Glycine dehydrogenase [decarboxylating] OS=... 31 1.7 sp|A6TDR5|GCSP_KLEP7 Glycine dehydrogenase [decarboxylating] OS=... 31 1.7 sp|Q1R7C8|GCSP_ECOUT Glycine dehydrogenase [decarboxylating] OS=... 31 1.7 sp|P33195|GCSP_ECOLI Glycine dehydrogenase [decarboxylating] OS=... 31 1.7 sp|Q8FE67|GCSP_ECOL6 Glycine dehydrogenase [decarboxylating] OS=... 31 1.7 sp|Q0TDU9|GCSP_ECOL5 Glycine dehydrogenase [decarboxylating] OS=... 31 1.7 sp|A1AF92|GCSP_ECOK1 Glycine dehydrogenase [decarboxylating] OS=... 31 1.7 sp|A8A444|GCSP_ECOHS Glycine dehydrogenase [decarboxylating] OS=... 31 1.7 sp|Q8XD33|GCSP_ECO57 Glycine dehydrogenase [decarboxylating] OS=... 31 1.7 sp|A7ZR12|GCSP_ECO24 Glycine dehydrogenase [decarboxylating] OS=... 31 1.7 sp|A1S965|GCSP_SHEAM Glycine dehydrogenase [decarboxylating] OS=... 30 2.9
>sp|Q6D974|GCSP_ERWCT Glycine dehydrogenase [decarboxylating] OS=Erwinia carotovora subsp. atroseptica GN=gcvP PE=3 SV=1 Length = 957
Score = 33.9 bits (76), Expect = 0.26 Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 5/62 (8%) Frame = -2
Query: 296 YRREIE----W-VSLTILLSVCMQGRNYAAGEGVFMFSVRRYFSNRKKSERELL**RKCT 132 YR+ IE W V LT +VCMQ + A GE + ++RRY +R ++ R L C Sbjct: 545 YRQMIEQLSGWLVQLTGYDAVCMQPNSGAQGEYAGLLAIRRYHESRNEAGRHL-----CL 599
Query: 131 IP 126 IP Sbjct: 600 IP 601
>sp|Q9HTX7|GCSP2_PSEAE Glycine dehydrogenase [decarboxylating] 2 OS=Pseudomonas aeruginosa GN=gcvP2 PE=3 SV=1 Length = 958
Score = 33.9 bits (76), Expect = 0.26 Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 5/62 (8%) Frame = -2
Query: 296 YRREIE----WV-SLTILLSVCMQGRNYAAGEGVFMFSVRRYFSNRKKSERELL**RKCT 132 YRR I+ W+ ++T ++CMQ + A GE + ++RRY +R S+R++ C Sbjct: 544 YRRMIDELEAWLRAITGFDAICMQPNSGAQGEYAGLLAIRRYHQSRGDSQRDI-----CL 598
Query: 131 IP 126 IP Sbjct: 599 IP 600
>sp|Q666R7|GCSP_YERPS Glycine dehydrogenase [decarboxylating] OS=Yersinia pseudotuberculosis GN=gcvP PE=3 SV=1 Length = 959
Score = 32.7 bits (73), Expect = 0.58 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Frame = -2
Query: 281 EW-VSLTILLSVCMQGRNYAAGEGVFMFSVRRYFSNRKKSERELL**RKCTIP 126 +W V LT +VCMQ + A GE + ++RRY +R ++ R + C IP Sbjct: 554 QWLVQLTGYDAVCMQPNSGAQGEYAGLLAIRRYHESRNQANRHI-----CLIP 601
>sp|A4TIA7|GCSP_YERPP Glycine dehydrogenase [decarboxylating] OS=Yersinia pestis (strain Pestoides F) GN=gcvP PE=3 SV=1 Length = 959
Score = 32.7 bits (73), Expect = 0.58 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Frame = -2
Query: 281 EW-VSLTILLSVCMQGRNYAAGEGVFMFSVRRYFSNRKKSERELL**RKCTIP 126 +W V LT +VCMQ + A GE + ++RRY +R ++ R + C IP Sbjct: 554 QWLVQLTGYDAVCMQPNSGAQGEYAGLLAIRRYHESRNQANRHI-----CLIP 601
>sp|Q1CEZ9|GCSP_YERPN Glycine dehydrogenase [decarboxylating] OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=gcvP PE=3 SV=1 Length = 959
Score = 32.7 bits (73), Expect = 0.58 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Frame = -2
Query: 281 EW-VSLTILLSVCMQGRNYAAGEGVFMFSVRRYFSNRKKSERELL**RKCTIP 126 +W V LT +VCMQ + A GE + ++RRY +R ++ R + C IP Sbjct: 554 QWLVQLTGYDAVCMQPNSGAQGEYAGLLAIRRYHESRNQANRHI-----CLIP 601
>sp|Q8ZHI8|GCSP_YERPE Glycine dehydrogenase [decarboxylating] OS=Yersinia pestis GN=gcvP PE=3 SV=3 Length = 959
Score = 32.7 bits (73), Expect = 0.58 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Frame = -2
Query: 281 EW-VSLTILLSVCMQGRNYAAGEGVFMFSVRRYFSNRKKSERELL**RKCTIP 126 +W V LT +VCMQ + A GE + ++RRY +R ++ R + C IP Sbjct: 554 QWLVQLTGYDAVCMQPNSGAQGEYAGLLAIRRYHESRNQANRHI-----CLIP 601
>sp|Q1CB42|GCSP_YERPA Glycine dehydrogenase [decarboxylating] OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=gcvP PE=3 SV=1 Length = 959
Score = 32.7 bits (73), Expect = 0.58 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Frame = -2
Query: 281 EW-VSLTILLSVCMQGRNYAAGEGVFMFSVRRYFSNRKKSERELL**RKCTIP 126 +W V LT +VCMQ + A GE + ++RRY +R ++ R + C IP Sbjct: 554 QWLVQLTGYDAVCMQPNSGAQGEYAGLLAIRRYHESRNQANRHI-----CLIP 601
>sp|A7FF21|GCSP_YERP3 Glycine dehydrogenase [decarboxylating] OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=gcvP PE=3 SV=1 Length = 959
Score = 32.7 bits (73), Expect = 0.58 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Frame = -2
Query: 281 EW-VSLTILLSVCMQGRNYAAGEGVFMFSVRRYFSNRKKSERELL**RKCTIP 126 +W V LT +VCMQ + A GE + ++RRY +R ++ R + C IP Sbjct: 554 QWLVQLTGYDAVCMQPNSGAQGEYAGLLAIRRYHESRNQANRHI-----CLIP 601
>sp|A1JPN3|GCSP_YERE8 Glycine dehydrogenase [decarboxylating] OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=gcvP PE=3 SV=1 Length = 959
Score = 32.7 bits (73), Expect = 0.58 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Frame = -2
Query: 281 EW-VSLTILLSVCMQGRNYAAGEGVFMFSVRRYFSNRKKSERELL**RKCTIP 126 +W V LT +VCMQ + A GE + ++RRY +R ++ R + C IP Sbjct: 554 QWLVQLTGYDAVCMQPNSGAQGEYAGLLAIRRYHESRNQASRHI-----CLIP 601
>sp|Q2NRF0|GCSP_SODGM Glycine dehydrogenase [decarboxylating] OS=Sodalis glossinidius (strain morsitans) GN=gcvP PE=3 SV=1 Length = 953
Score = 32.3 bits (72), Expect = 0.75 Identities = 17/50 (34%), Positives = 27/50 (54%) Frame = -2
Query: 275 VSLTILLSVCMQGRNYAAGEGVFMFSVRRYFSNRKKSERELL**RKCTIP 126 + LT ++CMQ + A GE + ++RRY +R + ER + C IP Sbjct: 554 IQLTGYDALCMQPNSGAQGEYAGLLAIRRYHESRNQGERHI-----CLIP 598
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q02EF1 |
Definition |
tr|Q02EF1|Q02EF1_PSEAB Glycine cleavage system protein P1 OS=Pseudomonas aeruginosa (strain UCBPP-PA14) |
Align length |
62 |
Score (bit) |
33.9 |
E-value |
4.2 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP912314|Adiantum capillus-veneris mRNA, clone: YMU001_000017_F04. (342 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q02EF1|Q02EF1_PSEAB Glycine cleavage system protein P1 OS=Pse... 34 4.2 tr|A6VDY9|A6VDY9_PSEA7 Glycine dehydrogenase OS=Pseudomonas aeru... 34 4.2 tr|B7V5A3|B7V5A3_PSEAE Glycine cleavage system protein P1 OS=Pse... 34 4.2 tr|A3LIR5|A3LIR5_PSEAE Glycine cleavage system protein P1 OS=Pse... 34 4.2 tr|A3L251|A3L251_PSEAE Glycine cleavage system protein P1 OS=Pse... 34 4.2 tr|B6X417|B6X417_9ENTR Putative uncharacterized protein OS=Provi... 33 7.1 tr|B2K0Q3|B2K0Q3_YERPB Glycine dehydrogenase OS=Yersinia pseudot... 33 9.3 tr|B1JNS8|B1JNS8_YERPY Glycine dehydrogenase OS=Yersinia pseudot... 33 9.3 tr|A9R4K8|A9R4K8_YERPG Glycine dehydrogenase OS=Yersinia pestis ... 33 9.3 tr|B0HVQ3|B0HVQ3_YERPE Glycine dehydrogenase OS=Yersinia pestis ... 33 9.3 tr|B0HIP9|B0HIP9_YERPE Glycine dehydrogenase OS=Yersinia pestis ... 33 9.3 tr|B0H6K8|B0H6K8_YERPE Glycine dehydrogenase OS=Yersinia pestis ... 33 9.3 tr|B0GNC0|B0GNC0_YERPE Glycine dehydrogenase OS=Yersinia pestis ... 33 9.3 tr|B0GFK8|B0GFK8_YERPE Glycine dehydrogenase OS=Yersinia pestis ... 33 9.3 tr|A9ZVX0|A9ZVX0_YERPE Glycine dehydrogenase OS=Yersinia pestis ... 33 9.3 tr|A9Z733|A9Z733_YERPE Glycine dehydrogenase OS=Yersinia pestis ... 33 9.3 tr|A6BTX6|A6BTX6_YERPE Glycine dehydrogenase OS=Yersinia pestis ... 33 9.3
>tr|Q02EF1|Q02EF1_PSEAB Glycine cleavage system protein P1 OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=gcvP1 PE=4 SV=1 Length = 958
Score = 33.9 bits (76), Expect = 4.2 Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 5/62 (8%) Frame = -2
Query: 296 YRREIE----WV-SLTILLSVCMQGRNYAAGEGVFMFSVRRYFSNRKKSERELL**RKCT 132 YRR I+ W+ ++T ++CMQ + A GE + ++RRY +R S+R++ C Sbjct: 544 YRRMIDELEAWLRAITGFDAICMQPNSGAQGEYAGLLAIRRYHQSRGDSQRDI-----CL 598
Query: 131 IP 126 IP Sbjct: 599 IP 600
>tr|A6VDY9|A6VDY9_PSEA7 Glycine dehydrogenase OS=Pseudomonas aeruginosa (strain PA7) GN=gcvP1 PE=4 SV=1 Length = 1000
Score = 33.9 bits (76), Expect = 4.2 Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 5/62 (8%) Frame = -2
Query: 296 YRREIE----WV-SLTILLSVCMQGRNYAAGEGVFMFSVRRYFSNRKKSERELL**RKCT 132 YRR I+ W+ ++T ++CMQ + A GE + ++RRY +R S+R++ C Sbjct: 586 YRRMIDELEAWLRAITGFDAICMQPNSGAQGEYAGLLAIRRYHQSRGDSQRDI-----CL 640
Query: 131 IP 126 IP Sbjct: 641 IP 642
>tr|B7V5A3|B7V5A3_PSEAE Glycine cleavage system protein P1 OS=Pseudomonas aeruginosa LESB58 GN=gcvP1 PE=4 SV=1 Length = 958
Score = 33.9 bits (76), Expect = 4.2 Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 5/62 (8%) Frame = -2
Query: 296 YRREIE----WV-SLTILLSVCMQGRNYAAGEGVFMFSVRRYFSNRKKSERELL**RKCT 132 YRR I+ W+ ++T ++CMQ + A GE + ++RRY +R S+R++ C Sbjct: 544 YRRMIDELEAWLRAITGFDAICMQPNSGAQGEYAGLLAIRRYHQSRGDSQRDI-----CL 598
Query: 131 IP 126 IP Sbjct: 599 IP 600
>tr|A3LIR5|A3LIR5_PSEAE Glycine cleavage system protein P1 OS=Pseudomonas aeruginosa 2192 GN=PA2G_04734 PE=4 SV=1 Length = 958
Score = 33.9 bits (76), Expect = 4.2 Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 5/62 (8%) Frame = -2
Query: 296 YRREIE----WV-SLTILLSVCMQGRNYAAGEGVFMFSVRRYFSNRKKSERELL**RKCT 132 YRR I+ W+ ++T ++CMQ + A GE + ++RRY +R S+R++ C Sbjct: 544 YRRMIDELEAWLRAITGFDAICMQPNSGAQGEYAGLLAIRRYHQSRGDSQRDI-----CL 598
Query: 131 IP 126 IP Sbjct: 599 IP 600
>tr|A3L251|A3L251_PSEAE Glycine cleavage system protein P1 OS=Pseudomonas aeruginosa C3719 GN=PACG_04206 PE=4 SV=1 Length = 960
Score = 33.9 bits (76), Expect = 4.2 Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 5/62 (8%) Frame = -2
Query: 296 YRREIE----WV-SLTILLSVCMQGRNYAAGEGVFMFSVRRYFSNRKKSERELL**RKCT 132 YRR I+ W+ ++T ++CMQ + A GE + ++RRY +R S+R++ C Sbjct: 546 YRRMIDELEAWLRAITGFDAICMQPNSGAQGEYAGLLAIRRYHQSRGDSQRDI-----CL 600
Query: 131 IP 126 IP Sbjct: 601 IP 602
>tr|B6X417|B6X417_9ENTR Putative uncharacterized protein OS=Providencia rustigianii DSM 4541 GN=PROVRUST_01959 PE=4 SV=1 Length = 968
Score = 33.1 bits (74), Expect = 7.1 Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 5/64 (7%) Frame = -2
Query: 302 QFYRREIE----W-VSLTILLSVCMQGRNYAAGEGVFMFSVRRYFSNRKKSERELL**RK 138 Q Y + IE W V LT +VCMQ + A GE + ++RRY +R + +R + Sbjct: 553 QGYHQMIEQLSHWLVQLTGYDAVCMQPNSGAQGEYAGLLAIRRYHESRNEGDRNI----- 607
Query: 137 CTIP 126 C IP Sbjct: 608 CLIP 611
>tr|B2K0Q3|B2K0Q3_YERPB Glycine dehydrogenase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=YPTS_3311 PE=4 SV=1 Length = 959
Score = 32.7 bits (73), Expect = 9.3 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Frame = -2
Query: 281 EW-VSLTILLSVCMQGRNYAAGEGVFMFSVRRYFSNRKKSERELL**RKCTIP 126 +W V LT +VCMQ + A GE + ++RRY +R ++ R + C IP Sbjct: 554 QWLVQLTGYDAVCMQPNSGAQGEYAGLLAIRRYHESRNQANRHI-----CLIP 601
>tr|B1JNS8|B1JNS8_YERPY Glycine dehydrogenase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=YPK_0869 PE=4 SV=1 Length = 959
Score = 32.7 bits (73), Expect = 9.3 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Frame = -2
Query: 281 EW-VSLTILLSVCMQGRNYAAGEGVFMFSVRRYFSNRKKSERELL**RKCTIP 126 +W V LT +VCMQ + A GE + ++RRY +R ++ R + C IP Sbjct: 554 QWLVQLTGYDAVCMQPNSGAQGEYAGLLAIRRYHESRNQANRHI-----CLIP 601
>tr|A9R4K8|A9R4K8_YERPG Glycine dehydrogenase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=gcvP PE=4 SV=1 Length = 959
Score = 32.7 bits (73), Expect = 9.3 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Frame = -2
Query: 281 EW-VSLTILLSVCMQGRNYAAGEGVFMFSVRRYFSNRKKSERELL**RKCTIP 126 +W V LT +VCMQ + A GE + ++RRY +R ++ R + C IP Sbjct: 554 QWLVQLTGYDAVCMQPNSGAQGEYAGLLAIRRYHESRNQANRHI-----CLIP 601
>tr|B0HVQ3|B0HVQ3_YERPE Glycine dehydrogenase OS=Yersinia pestis biovar Antiqua str. E1979001 GN=gcvP PE=4 SV=1 Length = 959
Score = 32.7 bits (73), Expect = 9.3 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Frame = -2
Query: 281 EW-VSLTILLSVCMQGRNYAAGEGVFMFSVRRYFSNRKKSERELL**RKCTIP 126 +W V LT +VCMQ + A GE + ++RRY +R ++ R + C IP Sbjct: 554 QWLVQLTGYDAVCMQPNSGAQGEYAGLLAIRRYHESRNQANRHI-----CLIP 601
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