BP912321 |
Clone id |
YMU001_000017_G02 |
Library |
YMU01 |
Length |
567 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000017_G02. |
Accession |
BP912321 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL4200Contig1 |
Sequence |
AGGATGGTTATGATTGAGTCGCACTGCGCCGCCCACAGAGCCGTCCGCATAAGTTTGACA GAACGAGTAAAGACCATCAAAAACCGGGCAGTCTTCACCAACATTAAACCTTTTTAGTTG TCTCGTCTGCTCATGTTGAGTCTCTGGAGTGACCGACTTTAAGAATGAAATGTAATCATC CGCATGAAAACGGCAGAGGTCGCTAATACGAGCAGGAAGAGGCTTCAGCATTTCCATCTT CCGATCAAGCCCATATTGCACCAGGAGTGAATGTGTCATGCGAATGCGATGGGGTTTCAT AGGATGCCCCTGCCCATAGTAATAATTGCCAACATCTGGGTCGTAGAAATAAGCAACTTT CTTCTTTCTGCTTTCCGGCCCACCTGTTAAGGCATTGCCTCCATCCATGTAGAAGCCCCC AATGGCAAAAAATCTGGCTAAGAGTGCCCTATGACAATGTATGTAGGTGTTCAGATGCTT AAAGACCTGCAATAGTAAGTATTTTACGTCCCATGGCATCCTTAACATCTGCTCTGCTAT GTATCTTCCGCGCAAGGTGACTTTGCT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O22446 |
Definition |
sp|O22446|HDA19_ARATH Histone deacetylase 19 OS=Arabidopsis thaliana |
Align length |
131 |
Score (bit) |
230.0 |
E-value |
4.0e-60 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9TWS2 |
Definition |
tr|A9TWS2|A9TWS2_PHYPA Class I RPD3 type histone deacetylase protein OS=Physcomitrella patens subsp. patens |
Align length |
135 |
Score (bit) |
243.0 |
E-value |
4.0e-63 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP912321|Adiantum capillus-veneris mRNA, clone: YMU001_000017_G02. (567 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9TWS2|A9TWS2_PHYPA Class I RPD3 type histone deacetylase pro... 243 4e-63 tr|A9TG19|A9TG19_PHYPA Class I RPD3 type histone deacetylase pro... 243 4e-63 tr|A8MSD0|A8MSD0_ARATH Uncharacterized protein At4g38130.2 OS=Ar... 230 5e-59 tr|Q9LKG1|Q9LKG1_MESCR Histone deacetylase OS=Mesembryanthemum c... 228 2e-58 tr|A9PFZ1|A9PFZ1_POPTR Putative uncharacterized protein OS=Popul... 227 4e-58 tr|A7P8U9|A7P8U9_VITVI Chromosome chr3 scaffold_8, whole genome ... 226 5e-58 tr|A7PR61|A7PR61_VITVI Chromosome chr14 scaffold_26, whole genom... 226 7e-58 tr|Q94F82|Q94F82_MAIZE Histone deacetylase HDA101 (Putative unch... 223 4e-57 tr|Q7Y0Y8|Q7Y0Y8_ORYSJ Os06g0583400 protein OS=Oryza sativa subs... 220 4e-56 tr|Q5VP94|Q5VP94_ORYSJ cDNA clone:J013135B02, full insert sequen... 220 4e-56 tr|B8AKR4|B8AKR4_ORYSI Putative uncharacterized protein OS=Oryza... 220 4e-56 tr|Q0Z9W2|Q0Z9W2_WHEAT Histone deacetylase HDAC3 OS=Triticum aes... 218 2e-55 tr|B4FE74|B4FE74_MAIZE Putative uncharacterized protein OS=Zea m... 217 4e-55 tr|B6TFF4|B6TFF4_MAIZE Putative uncharacterized protein OS=Zea m... 216 5e-55 tr|Q9AXF0|Q9AXF0_ORYSA Histone deacetylase HD1 OS=Oryza sativa P... 215 2e-54 tr|A3A4J0|A3A4J0_ORYSJ Putative uncharacterized protein OS=Oryza... 207 4e-52 tr|Q7Y0Y7|Q7Y0Y7_ORYSJ Histone deacetylase HDAC2 OS=Oryza sativa... 206 1e-51 tr|Q6YV04|Q6YV04_ORYSJ cDNA clone:J033118M13, full insert sequen... 206 1e-51 tr|Q6YV03|Q6YV03_ORYSJ Histone deacetylase HDAC2-like protein OS... 206 1e-51 tr|B8AE72|B8AE72_ORYSI Putative uncharacterized protein OS=Oryza... 205 2e-51 tr|Q7Y0Y6|Q7Y0Y6_ORYSJ Os02g0214900 protein OS=Oryza sativa subs... 201 2e-50 tr|Q69VQ0|Q69VQ0_ORYSJ Histone deacetylase HDAC3-like OS=Oryza s... 201 2e-50 tr|B8AE69|B8AE69_ORYSI Putative uncharacterized protein OS=Oryza... 201 2e-50 tr|Q01EA7|Q01EA7_OSTTA Hda2 histone deacetylase (IC) OS=Ostreoco... 189 7e-47 tr|A4RSX7|A4RSX7_OSTLU Histone deacetylase OS=Ostreococcus lucim... 189 1e-46 tr|A7PCT8|A7PCT8_VITVI Chromosome chr17 scaffold_12, whole genom... 185 2e-45 tr|A7RFA3|A7RFA3_NEMVE Predicted protein (Fragment) OS=Nematoste... 182 1e-44 tr|Q5RKQ4|Q5RKQ4_DANRE Histone deacetylase 1 OS=Danio rerio GN=h... 177 4e-43 tr|B6RB85|B6RB85_HALDI Histone deacetylase 2 (Fragment) OS=Halio... 176 6e-43 tr|B8C5S2|B8C5S2_THAPS Histone deacetylase 1p OS=Thalassiosira p... 176 8e-43
>tr|A9TWS2|A9TWS2_PHYPA Class I RPD3 type histone deacetylase protein OS=Physcomitrella patens subsp. patens GN=HDA1504 PE=4 SV=1 Length = 404
Score = 243 bits (621), Expect = 4e-63 Identities = 108/135 (80%), Positives = 120/135 (88%) Frame = -1
Query: 408 MDGGNALTGGPESRKKKVAYFYDPDVGNYYYGQGHPMKPHRIRMTHSLLVQYGLDRKMEM 229 M+GGN+L GPE RK++V+YFYDPDVGNYYYGQGHPMKPHRIRM HSLLV Y L +ME+ Sbjct: 1 MEGGNSLVAGPEGRKRRVSYFYDPDVGNYYYGQGHPMKPHRIRMAHSLLVHYNLHTRMEV 60
Query: 228 LKPLPARISDLCRFHADDYISFLKSVTPETQHEQTRQLKRFNVGEDCPVFDGLYSFCQTY 49 L+P PAR DLCRFHADDY+SFLK VTPETQH+Q RQLKRFNVGEDCPVFDGLY+FCQTY Sbjct: 61 LRPYPARDRDLCRFHADDYVSFLKEVTPETQHDQMRQLKRFNVGEDCPVFDGLYNFCQTY 120
Query: 48 ADGSVGGAVRLNHNH 4 A GSVGGAV+LNH H Sbjct: 121 AGGSVGGAVKLNHGH 135
>tr|A9TG19|A9TG19_PHYPA Class I RPD3 type histone deacetylase protein OS=Physcomitrella patens subsp. patens GN=HDA1505 PE=4 SV=1 Length = 466
Score = 243 bits (621), Expect = 4e-63 Identities = 108/135 (80%), Positives = 120/135 (88%) Frame = -1
Query: 408 MDGGNALTGGPESRKKKVAYFYDPDVGNYYYGQGHPMKPHRIRMTHSLLVQYGLDRKMEM 229 M+GGN+L GPE RK++V+YFYDPDVGNYYYGQGHPMKPHRIRM HSLLV Y L +ME+ Sbjct: 1 MEGGNSLVAGPEGRKRRVSYFYDPDVGNYYYGQGHPMKPHRIRMAHSLLVHYNLHTRMEV 60
Query: 228 LKPLPARISDLCRFHADDYISFLKSVTPETQHEQTRQLKRFNVGEDCPVFDGLYSFCQTY 49 L+P PAR DLCRFHADDY+SFLK VTPETQH+Q RQLKRFNVGEDCPVFDGLY+FCQTY Sbjct: 61 LRPYPARDRDLCRFHADDYVSFLKEVTPETQHDQMRQLKRFNVGEDCPVFDGLYNFCQTY 120
Query: 48 ADGSVGGAVRLNHNH 4 A GSVGGAV+LNH H Sbjct: 121 AGGSVGGAVKLNHGH 135
>tr|A8MSD0|A8MSD0_ARATH Uncharacterized protein At4g38130.2 OS=Arabidopsis thaliana GN=At4g38130 PE=4 SV=1 Length = 469
Score = 230 bits (586), Expect = 5e-59 Identities = 102/131 (77%), Positives = 116/131 (88%) Frame = -1
Query: 402 GGNALTGGPESRKKKVAYFYDPDVGNYYYGQGHPMKPHRIRMTHSLLVQYGLDRKMEMLK 223 GGN+L GP+ K+KV YFYDP+VGNYYYGQGHPMKPHRIRMTH+LL YGL + M++LK Sbjct: 4 GGNSLASGPDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVLK 63
Query: 222 PLPARISDLCRFHADDYISFLKSVTPETQHEQTRQLKRFNVGEDCPVFDGLYSFCQTYAD 43 P PAR DLCRFHADDY+SFL+S+TPETQ +Q RQLKRFNVGEDCPVFDGLYSFCQTYA Sbjct: 64 PFPARDRDLCRFHADDYVSFLRSITPETQQDQIRQLKRFNVGEDCPVFDGLYSFCQTYAG 123
Query: 42 GSVGGAVRLNH 10 GSVGG+V+LNH Sbjct: 124 GSVGGSVKLNH 134
>tr|Q9LKG1|Q9LKG1_MESCR Histone deacetylase OS=Mesembryanthemum crystallinum GN=Hdeac1 PE=2 SV=1 Length = 500
Score = 228 bits (580), Expect = 2e-58 Identities = 101/131 (77%), Positives = 116/131 (88%) Frame = -1
Query: 402 GGNALTGGPESRKKKVAYFYDPDVGNYYYGQGHPMKPHRIRMTHSLLVQYGLDRKMEMLK 223 GGN+L GP+ K+KV+YFYDP+VGNYYYGQGHPMKPHRIRMTH+LL YGL + M++LK Sbjct: 4 GGNSLPSGPDGVKRKVSYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVLK 63
Query: 222 PLPARISDLCRFHADDYISFLKSVTPETQHEQTRQLKRFNVGEDCPVFDGLYSFCQTYAD 43 P+PAR DLCRFHADDY+SFL+ +TPE Q +Q RQLKRFNVGEDCPVFDGLYSFCQTYA Sbjct: 64 PVPARDRDLCRFHADDYVSFLRGITPEMQQDQLRQLKRFNVGEDCPVFDGLYSFCQTYAG 123
Query: 42 GSVGGAVRLNH 10 GSVGGAV+LNH Sbjct: 124 GSVGGAVKLNH 134
>tr|A9PFZ1|A9PFZ1_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 499
Score = 227 bits (578), Expect = 4e-58 Identities = 103/133 (77%), Positives = 117/133 (87%), Gaps = 1/133 (0%) Frame = -1
Query: 402 GGNAL-TGGPESRKKKVAYFYDPDVGNYYYGQGHPMKPHRIRMTHSLLVQYGLDRKMEML 226 GGN+L + P+ K+KV YFYDP+VGNYYYGQGHPMKPHRIRMTH+LL YGL + M++L Sbjct: 4 GGNSLPSAAPDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVL 63
Query: 225 KPLPARISDLCRFHADDYISFLKSVTPETQHEQTRQLKRFNVGEDCPVFDGLYSFCQTYA 46 KP PAR DLCRFHADDY+SFL+S+TPETQ +Q RQLKRFNVGEDCPVFDGLYSFCQTYA Sbjct: 64 KPFPARDRDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLYSFCQTYA 123
Query: 45 DGSVGGAVRLNHN 7 GSVGGAV+LNHN Sbjct: 124 GGSVGGAVKLNHN 136
>tr|A7P8U9|A7P8U9_VITVI Chromosome chr3 scaffold_8, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00036316001 PE=4 SV=1 Length = 445
Score = 226 bits (577), Expect = 5e-58 Identities = 101/131 (77%), Positives = 115/131 (87%) Frame = -1
Query: 402 GGNALTGGPESRKKKVAYFYDPDVGNYYYGQGHPMKPHRIRMTHSLLVQYGLDRKMEMLK 223 GGN+L G + K+KV+YFYDP+VGNYYYGQGHPMKPHRIRMTH+LL YGL + M++LK Sbjct: 4 GGNSLPSGADGVKRKVSYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVLK 63
Query: 222 PLPARISDLCRFHADDYISFLKSVTPETQHEQTRQLKRFNVGEDCPVFDGLYSFCQTYAD 43 P PAR DLCRFHADDY+SFL+ +TPETQ +Q RQLKRFNVGEDCPVFDGLYSFCQTYA Sbjct: 64 PFPARDRDLCRFHADDYVSFLRGITPETQQDQLRQLKRFNVGEDCPVFDGLYSFCQTYAG 123
Query: 42 GSVGGAVRLNH 10 GSVGGAV+LNH Sbjct: 124 GSVGGAVKLNH 134
>tr|A7PR61|A7PR61_VITVI Chromosome chr14 scaffold_26, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00022343001 PE=4 SV=1 Length = 394
Score = 226 bits (576), Expect = 7e-58 Identities = 101/131 (77%), Positives = 115/131 (87%) Frame = -1
Query: 402 GGNALTGGPESRKKKVAYFYDPDVGNYYYGQGHPMKPHRIRMTHSLLVQYGLDRKMEMLK 223 GGN+L G + K+KV+YFYDP+VGNYYYGQGHPMKPHRIRMTH+LL YGL + M++LK Sbjct: 4 GGNSLPSGADGVKRKVSYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVLK 63
Query: 222 PLPARISDLCRFHADDYISFLKSVTPETQHEQTRQLKRFNVGEDCPVFDGLYSFCQTYAD 43 P PAR DLCRFHADDY+SFL+ +TPETQ +Q RQLKRFNVGEDCPVFDGLYSFCQTYA Sbjct: 64 PCPARDRDLCRFHADDYVSFLRGITPETQQDQLRQLKRFNVGEDCPVFDGLYSFCQTYAG 123
Query: 42 GSVGGAVRLNH 10 GSVGGAV+LNH Sbjct: 124 GSVGGAVKLNH 134
>tr|Q94F82|Q94F82_MAIZE Histone deacetylase HDA101 (Putative uncharacterized protein) OS=Zea mays GN=hda101 PE=2 SV=1 Length = 517
Score = 223 bits (569), Expect = 4e-57 Identities = 102/134 (76%), Positives = 116/134 (86%), Gaps = 1/134 (0%) Frame = -1
Query: 402 GGNALTG-GPESRKKKVAYFYDPDVGNYYYGQGHPMKPHRIRMTHSLLVQYGLDRKMEML 226 GGN+L GP+ +K++V YFYDPDVGNYYYGQGHPMKPHRIRMTHSLL +YGL +M++ Sbjct: 9 GGNSLPSVGPDGQKRRVCYFYDPDVGNYYYGQGHPMKPHRIRMTHSLLARYGLLNQMQVY 68
Query: 225 KPLPARISDLCRFHADDYISFLKSVTPETQHEQTRQLKRFNVGEDCPVFDGLYSFCQTYA 46 +P PAR DLCRFHADDYI+FL+SVTPETQ +Q R LKRFNVGEDCPVFDGLYSFCQTYA Sbjct: 69 RPNPARDRDLCRFHADDYINFLRSVTPETQQDQIRLLKRFNVGEDCPVFDGLYSFCQTYA 128
Query: 45 DGSVGGAVRLNHNH 4 SVGGAV+LNH H Sbjct: 129 GASVGGAVKLNHGH 142
>tr|Q7Y0Y8|Q7Y0Y8_ORYSJ Os06g0583400 protein OS=Oryza sativa subsp. japonica GN=Os06g0583400 PE=2 SV=1 Length = 518
Score = 220 bits (561), Expect = 4e-56 Identities = 101/134 (75%), Positives = 115/134 (85%), Gaps = 1/134 (0%) Frame = -1
Query: 402 GGNAL-TGGPESRKKKVAYFYDPDVGNYYYGQGHPMKPHRIRMTHSLLVQYGLDRKMEML 226 GGN+L T G + K++V YFYD +VGNYYYGQGHPMKPHRIRMTH+LL YGL +M++L Sbjct: 8 GGNSLPTAGADGAKRRVCYFYDAEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLDQMQVL 67
Query: 225 KPLPARISDLCRFHADDYISFLKSVTPETQHEQTRQLKRFNVGEDCPVFDGLYSFCQTYA 46 KP PAR DLCRFHADDY++FL+SVTPETQ +Q R LKRFNVGEDCPVFDGLYSFCQTYA Sbjct: 68 KPHPARDRDLCRFHADDYVAFLRSVTPETQQDQIRALKRFNVGEDCPVFDGLYSFCQTYA 127
Query: 45 DGSVGGAVRLNHNH 4 GSVGGAV+LNH H Sbjct: 128 GGSVGGAVKLNHGH 141
>tr|Q5VP94|Q5VP94_ORYSJ cDNA clone:J013135B02, full insert sequence OS=Oryza sativa subsp. japonica GN=P0498C03.28-2 PE=2 SV=1 Length = 460
Score = 220 bits (561), Expect = 4e-56 Identities = 101/134 (75%), Positives = 115/134 (85%), Gaps = 1/134 (0%) Frame = -1
Query: 402 GGNAL-TGGPESRKKKVAYFYDPDVGNYYYGQGHPMKPHRIRMTHSLLVQYGLDRKMEML 226 GGN+L T G + K++V YFYD +VGNYYYGQGHPMKPHRIRMTH+LL YGL +M++L Sbjct: 8 GGNSLPTAGADGAKRRVCYFYDAEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLDQMQVL 67
Query: 225 KPLPARISDLCRFHADDYISFLKSVTPETQHEQTRQLKRFNVGEDCPVFDGLYSFCQTYA 46 KP PAR DLCRFHADDY++FL+SVTPETQ +Q R LKRFNVGEDCPVFDGLYSFCQTYA Sbjct: 68 KPHPARDRDLCRFHADDYVAFLRSVTPETQQDQIRALKRFNVGEDCPVFDGLYSFCQTYA 127
Query: 45 DGSVGGAVRLNHNH 4 GSVGGAV+LNH H Sbjct: 128 GGSVGGAVKLNHGH 141
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