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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912329
Clone id YMU001_000017_H01
Library
Length 411
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000017_H01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTTTTTTTGCAAAAAAATATATGAACCTTCAATTGCTTTTTCATCTATACATCTTGCATG
CTAACTTTGATAACAGCTATATATAACCCAGGGATACTCTCTCTCTCTTTGAGAGTCGAT
TCACAGCGATTTCCAGATGTTTACCGCAGTCGTATGAGCAAAAAATAGCAACAAATAAAT
ATGGTCATCCCCTCCCCACTTCACAAAAAGTTGCAGGTTTGATGAGGGTTGATGAGCACT
TTGCAGATTCATGGTATTATAGCTTGAGACCTTTCCGTCGAAAGAGGAAGGAGTCACCTT
GCACATCAGAGCGAATACCGGAAAACCCAATTCTCTCAAACAAACTTTGGTGTTTATCTC
TTCAACCAAGCTGCCTGGCTCGCTTTTCCCACATGGCAGATATCTTCTTTT
■■Homology search results ■■ -
sp_hit_id A6NNW6
Definition sp|A6NNW6|ENOLL_HUMAN Enolase-like protein ENSP00000345555 OS=Homo sapiens
Align length 40
Score (bit) 30.4
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912329|Adiantum capillus-veneris mRNA, clone:
YMU001_000017_H01.
         (411 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A6NNW6|ENOLL_HUMAN Enolase-like protein ENSP00000345555 OS=Ho...    30   2.9  
sp|Q29FF7|MED14_DROPS Mediator of RNA polymerase II transcriptio...    29   8.4  
sp|Q9W0P8|MED14_DROME Mediator of RNA polymerase II transcriptio...    29   8.4  

>sp|A6NNW6|ENOLL_HUMAN Enolase-like protein ENSP00000345555 OS=Homo
           sapiens PE=3 SV=2
          Length = 628

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 7/40 (17%)
 Frame = -3

Query: 253 HESAKCSSTLIKPATFCEV-------GRG*PYLFVAIFCS 155
           H  A C S L KP T C++       G G P L V IFC+
Sbjct: 54  HLKANCFSKLAKPPTICKIVGKDVLDGLGLPTLQVDIFCT 93


>sp|Q29FF7|MED14_DROPS Mediator of RNA polymerase II transcription
           subunit 14 OS=Drosophila pseudoobscura pseudoobscura
           GN=MED14 PE=3 SV=2
          Length = 1546

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -1

Query: 270 VSSYNTMNLQSAHQPSSNLQLFVKWGGDDHIYLLLFFAHTTAVN 139
           V SY+ MNL   + P   +   + W    H + L F    +AVN
Sbjct: 830 VKSYSYMNLLLGYGPKKEVSCNIYWSVQSHGFRLTFVGGMSAVN 873


>sp|Q9W0P8|MED14_DROME Mediator of RNA polymerase II transcription
           subunit 14 OS=Drosophila melanogaster GN=MED14 PE=1 SV=4
          Length = 1553

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -1

Query: 270 VSSYNTMNLQSAHQPSSNLQLFVKWGGDDHIYLLLFFAHTTAVN 139
           V SY+ MNL   + P   +   + W    H + L F    +AVN
Sbjct: 834 VKSYSYMNLLLGYGPKKEVSCNIYWSVQSHGFRLTFVGGMSAVN 877
tr_hit_id B0SIZ6
Definition tr|B0SIZ6|B0SIZ6_LEPBP Putative uncharacterized protein OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris)
Align length 44
Score (bit) 35.8
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912329|Adiantum capillus-veneris mRNA, clone:
YMU001_000017_H01.
         (411 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B0SIZ6|B0SIZ6_LEPBP Putative uncharacterized protein OS=Lepto...    36   1.1  
tr|B0SAY0|B0SAY0_LEPBA Deoxygenase OS=Leptospira biflexa serovar...    36   1.1  
tr|Q011T0|Q011T0_OSTTA Chromosome 09 contig 1, DNA sequence OS=O...    33   7.1  

>tr|B0SIZ6|B0SIZ6_LEPBP Putative uncharacterized protein
           OS=Leptospira biflexa serovar Patoc (strain Patoc 1 /
           ATCC 23582 / Paris) GN=LEPBI_I0372 PE=4 SV=1
          Length = 242

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = +1

Query: 292 SHLAHQSEYRKTQFS----QTNFGVYLFNQAAWLAFPTWQISSF 411
           +HL H++EY K +FS     TNF         W  FP W++SSF
Sbjct: 188 AHLLHKAEYGKNRFSFDVLYTNFPESKHMVEKWNHFPNWEMSSF 231


>tr|B0SAY0|B0SAY0_LEPBA Deoxygenase OS=Leptospira biflexa serovar
           Patoc (strain Patoc 1 / Ames) GN=LBF_0361 PE=4 SV=1
          Length = 252

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = +1

Query: 292 SHLAHQSEYRKTQFS----QTNFGVYLFNQAAWLAFPTWQISSF 411
           +HL H++EY K +FS     TNF         W  FP W++SSF
Sbjct: 198 AHLLHKAEYGKNRFSFDVLYTNFPESKHMVEKWNHFPNWEMSSF 241


>tr|Q011T0|Q011T0_OSTTA Chromosome 09 contig 1, DNA sequence
           OS=Ostreococcus tauri GN=Ot09g01910 PE=4 SV=1
          Length = 431

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
 Frame = +3

Query: 93  DTLSLFESRFTAISRCLP----QSYEQKIA-TNKYGHPLPTSQKVAGLMRVDEHFADSWY 257
           D L L   R T ++   P    ++   K+  T++Y  P PT +++A +      FA +  
Sbjct: 149 DPLPLLNKRSTEVNPSTPAGAIRTRRNKVTFTDEY--PSPTDEEIAVVRDESWRFASTGK 206

Query: 258 YSLRPFRRKRKESPCTSERIPE 323
            S RP      E+P T+E+ PE
Sbjct: 207 KSSRPINPFGSETPATAEKTPE 228