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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912331
Clone id YMU001_000017_H03
Library
Length 481
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000017_H03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AATGTGCACTTCGCTTATGTAATCAAACCATTCCTTATTGGGTTAACCCATGAAATAGAG
GAGTGTAAGATACACCGGAGCTGTGAGATGAGTCCCTTAATAAGGGCTTGATACAAGTGC
TTGGTAGTGTTACCTCGTGCGAAGATTCATTGGGTGGAGCCGACCAAGAAAGGCATGGGA
AATTATTACAGTAGCAAGCAGCTCAAGCAAGCCTCAAACAGATTGGGAAGCACGATGCAG
TACAATGCCAAAAGGGTAGCCACTTGGTGGAGAGTTTTAGTGGAAACTGGGGCTTCGATG
CATGATATTAAGATATGACAAGAAAGCATTAAAACAAAAACGTTGCAGGTCGTTTGAAAA
ATTCTGCAGAGCGAGCATGCGGTTGACTAGGGAAAGAGAAGACAAGCCGTAGATGAAGCA
AGGTTGTAGGTGTAGAAGCCCTCGTAATGATTCCTTCTACAACACGGGTTGGGCAGGACT
G
■■Homology search results ■■ -
sp_hit_id Q5UQK5
Definition sp|Q5UQK5|YR403_MIMIV Uncharacterized protein R403 OS=Acanthamoeba polyphaga mimivirus
Align length 37
Score (bit) 32.7
E-value 0.89
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912331|Adiantum capillus-veneris mRNA, clone:
YMU001_000017_H03.
         (481 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5UQK5|YR403_MIMIV Uncharacterized protein R403 OS=Acanthamoe...    33   0.89 
sp|Q95XZ5|NPBL_CAEEL Nipped-B-like protein pqn-85 OS=Caenorhabdi...    32   1.5  
sp|O44757|LIN59_CAEEL Probable histone-lysine N-methyltransferas...    31   2.6  
sp|P23126|SM25_SCHMA Antigenic integral membrane glycoprotein OS...    29   9.8  

>sp|Q5UQK5|YR403_MIMIV Uncharacterized protein R403 OS=Acanthamoeba
           polyphaga mimivirus GN=MIMI_R403 PE=1 SV=1
          Length = 754

 Score = 32.7 bits (73), Expect = 0.89
 Identities = 13/37 (35%), Positives = 26/37 (70%), Gaps = 3/37 (8%)
 Frame = -2

Query: 330 NAFLSYLNIMHRSPSFH---*NSPPSGYPFGIVLHRA 229
           N+ LSY+ +M  +P+F+    N+P  G P+G++++R+
Sbjct: 251 NSLLSYIKLMELNPNFYSTITNNPYKGLPYGLLIYRS 287


>sp|Q95XZ5|NPBL_CAEEL Nipped-B-like protein pqn-85 OS=Caenorhabditis
            elegans GN=pqn-85 PE=2 SV=2
          Length = 2203

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = -2

Query: 429  LQPCFIYGLSSLSLVNRMLALQNFSNDLQRFCFNAFLSYLNIMHRSPSFH*NSPPSGY 256
            L P F+  + SL +   +LA   FS       F+     L+ +HR+P F   +  +GY
Sbjct: 934  LTPFFVANVGSLQITAMLLASNIFSRAEDSLRFSMITDLLSSLHRAPQFTQKNSNNGY 991


>sp|O44757|LIN59_CAEEL Probable histone-lysine N-methyltransferase
           lin-59 OS=Caenorhabditis elegans GN=lin-59 PE=2 SV=1
          Length = 1312

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -1

Query: 190 CNNFPCLSWSAPPNESSHEV-TLPSTCIKPLLRDSSHSSGVS 68
           C + PC S   PPN S+  + T+PS+C  P     S  +G++
Sbjct: 228 CYDVPCTSEGPPPNNSNPAITTIPSSCSTPAPPKESLPTGMN 269


>sp|P23126|SM25_SCHMA Antigenic integral membrane glycoprotein
           OS=Schistosoma mansoni PE=1 SV=1
          Length = 182

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -2

Query: 405 LSSLSLVNRMLALQNFSNDLQRFCFNAFL-SYLNIMHRSPSFH*NSPPSGYP 253
           L SL LVN      +   D     +N+ L S  N+ H   +FH NS P G+P
Sbjct: 63  LFSLKLVNSEENSNSIITDEDYDHYNSSLDSSNNVKHSQEAFHRNSDPDGFP 114
tr_hit_id B5FG33
Definition tr|B5FG33|B5FG33_VIBFM DNA polymerase III, delta' subunit OS=Vibrio fischeri (strain MJ11)
Align length 75
Score (bit) 35.0
E-value 1.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912331|Adiantum capillus-veneris mRNA, clone:
YMU001_000017_H03.
         (481 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B5FG33|B5FG33_VIBFM DNA polymerase III, delta' subunit OS=Vib...    35   1.8  
tr|Q01BZ7|Q01BZ7_OSTTA Chromosome 03 contig 1, DNA sequence OS=O...    34   3.1  
tr|B3SEB7|B3SEB7_TRIAD Putative uncharacterized protein (Fragmen...    33   7.0  
tr|A8RL01|A8RL01_9CLOT Putative uncharacterized protein OS=Clost...    33   9.2  
tr|A7CZW4|A7CZW4_9BACT Acriflavin resistance protein OS=Opitutac...    33   9.2  

>tr|B5FG33|B5FG33_VIBFM DNA polymerase III, delta' subunit OS=Vibrio
           fischeri (strain MJ11) GN=VFMJ11_1861 PE=4 SV=1
          Length = 327

 Score = 35.0 bits (79), Expect = 1.8
 Identities = 22/75 (29%), Positives = 36/75 (48%)
 Frame = +1

Query: 34  LIGLTHEIEECKIHRSCEMSPLIRA*YKCLVVLPRAKIHWVEPTKKGMGNYYSSKQLKQA 213
           L+ LT  IE C    SCE+          +       +HW++P  +G     S +Q++Q 
Sbjct: 50  LLCLTQGIEPCGFCHSCEL----------IKSQTHPDLHWIKPETEGKS--ISVEQIRQC 97

Query: 214 SNRLGSTMQYNAKRV 258
           ++    + Q+NAKRV
Sbjct: 98  NSWALESSQFNAKRV 112


>tr|Q01BZ7|Q01BZ7_OSTTA Chromosome 03 contig 1, DNA sequence
           OS=Ostreococcus tauri GN=Ot03g05080 PE=4 SV=1
          Length = 206

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -1

Query: 253 FWHCTASCFPICLRLA*AACYCNNFPCLSWSAPPNESSHE 134
           +W C  SC P  L     A +CN  P  SW   P+  + E
Sbjct: 13  YWSCAFSCMPRALASFFRALFCNGSPSASWVGTPSSPNLE 52


>tr|B3SEB7|B3SEB7_TRIAD Putative uncharacterized protein (Fragment)
           OS=Trichoplax adhaerens GN=TRIADDRAFT_34439 PE=4 SV=1
          Length = 159

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = -3

Query: 434 YTYNLASSTACLLFP*STACSLCRIFQTTCNVFVLMLSCHILISCIEAPVSTKT-LHQVA 258
           Y+ ++  +  C+++  S  C  C +  T CN+F L  S +  +  +E  V   T L+ V 
Sbjct: 13  YSVSVLYTVHCVIY--SVVCRDCTVHCTLCNIFCLQYSMYCRMFHLECTVLYCTVLYTVV 70

Query: 257 TLLALYCIV 231
               LYC V
Sbjct: 71  YCTVLYCTV 79


>tr|A8RL01|A8RL01_9CLOT Putative uncharacterized protein
           OS=Clostridium bolteae ATCC BAA-613 GN=CLOBOL_01463 PE=4
           SV=1
          Length = 771

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 164 PRKAWEIITVASSSSKPQTDWEARCSTMPKG*PLGGEF 277
           P+K WE++   +  + P + WE   ++MP+G   G EF
Sbjct: 110 PKKWWEVMDRTTGQAVPVSQWELTGASMPEGFCSGSEF 147


>tr|A7CZW4|A7CZW4_9BACT Acriflavin resistance protein OS=Opitutaceae
           bacterium TAV2 GN=ObacDRAFT_1077 PE=4 SV=1
          Length = 542

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = +3

Query: 339 NVAGRLKNSAERACG*LGKEKTSRR*SKVVGVEALVMIPSTTRVG 473
           N+  RLK+ +ERA       +  R+ S+VVG+ A   +P T R+G
Sbjct: 127 NMTVRLKDRSERASAFQVVNELRRQLSRVVGIRAYPQVPPTIRIG 171