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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912332
Clone id YMU001_000017_H04
Library
Length 392
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000017_H04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTTGGGTGCTCAAAGAAATCCAAGATGGTGACTTGGAATTTTGCTGAAAGTGAGGCTTGT
TTGGGCGTAGCCAACAAAACAAGCTCTCTTCTTCATTGCATCAACGATGACATTTTTGGC
TTTCTTTTTCCCTTGGGTGTCCAAAGAAATCCAAGATGGTGACTTGGAATTTTGCTGAAA
GTGAGGCTACTTTGAAGTTCCCTAATTGGTGATCAAAATCTCTTTTTTCTCATAAACTTC
TCCATTTTTTAAATGGAATGTTTTGTCCATAGCATCCTCGACATTAGTCGAGGCATATCT
TTAATCAAGGCCCATTGATAGATGCATATCTACATCTTGCGTAGAATCCACCTTATAATA
GGTGACCCTCCTTGAAAACCGTAGCATTCTTG
■■Homology search results ■■ -
sp_hit_id Q8NUI7
Definition sp|Q8NUI7|ICAA_STAAW Biofilm PIA synthesis N-glycosyltransferase icaA OS=Staphylococcus aureus (strain MW2)
Align length 62
Score (bit) 29.6
E-value 4.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912332|Adiantum capillus-veneris mRNA, clone:
YMU001_000017_H04.
         (392 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8NUI7|ICAA_STAAW Biofilm PIA synthesis N-glycosyltransferase...    30   4.9  
sp|Q6G608|ICAA_STAAS Biofilm PIA synthesis N-glycosyltransferase...    30   4.9  
sp|Q5H6Q4|GLGA_XANOR Glycogen synthase OS=Xanthomonas oryzae pv....    29   6.4  
sp|Q2P9F6|GLGA_XANOM Glycogen synthase OS=Xanthomonas oryzae pv....    29   6.4  
sp|Q8PDD2|GLGA_XANCP Glycogen synthase OS=Xanthomonas campestris...    29   6.4  
sp|Q4UZL8|GLGA_XANC8 Glycogen synthase OS=Xanthomonas campestris...    29   6.4  
sp|Q3BYI1|GLGA_XANC5 Glycogen synthase OS=Xanthomonas campestris...    29   6.4  
sp|Q8PQA3|GLGA_XANAC Glycogen synthase OS=Xanthomonas axonopodis...    29   6.4  
sp|Q21SF8|RPOC_RHOFD DNA-directed RNA polymerase subunit beta' O...    29   8.4  
sp|Q894H0|DXS_CLOTE 1-deoxy-D-xylulose-5-phosphate synthase OS=C...    29   8.4  

>sp|Q8NUI7|ICAA_STAAW Biofilm PIA synthesis N-glycosyltransferase
           icaA OS=Staphylococcus aureus (strain MW2) GN=icaA PE=3
           SV=1
          Length = 412

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 19/62 (30%), Positives = 31/62 (50%)
 Frame = -3

Query: 378 FSRRVTYYKVDSTQDVDMHLSMGLD*RYASTNVEDAMDKTFHLKNGEVYEKKEILITN*G 199
           F+R + Y  ++   D+++    G+    A  N  D ++ T        YEKKEI+I N G
Sbjct: 27  FTREIRY-SLNKKPDINVDELEGITFLLACYNESDTIEDTLSNVLALKYEKKEIIIINDG 85

Query: 198 TS 193
           +S
Sbjct: 86  SS 87


>sp|Q6G608|ICAA_STAAS Biofilm PIA synthesis N-glycosyltransferase
           icaA OS=Staphylococcus aureus (strain MSSA476) GN=icaA
           PE=3 SV=1
          Length = 412

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 19/62 (30%), Positives = 31/62 (50%)
 Frame = -3

Query: 378 FSRRVTYYKVDSTQDVDMHLSMGLD*RYASTNVEDAMDKTFHLKNGEVYEKKEILITN*G 199
           F+R + Y  ++   D+++    G+    A  N  D ++ T        YEKKEI+I N G
Sbjct: 27  FTREIRY-SLNKKPDINVDELEGITFLLACYNESDTIEDTLSNVLALKYEKKEIIIINDG 85

Query: 198 TS 193
           +S
Sbjct: 86  SS 87


>sp|Q5H6Q4|GLGA_XANOR Glycogen synthase OS=Xanthomonas oryzae pv.
           oryzae GN=glgA PE=3 SV=2
          Length = 509

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 40  FAESEACLGVANKTSSLLHCINDDIFGFLF 129
           +A+   CL +A+ T  L+  ++D + GFLF
Sbjct: 416 YAQRFGCLPIAHATGGLIDTVDDGVTGFLF 445


>sp|Q2P9F6|GLGA_XANOM Glycogen synthase OS=Xanthomonas oryzae pv.
           oryzae (strain MAFF 311018) GN=glgA PE=3 SV=1
          Length = 509

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 40  FAESEACLGVANKTSSLLHCINDDIFGFLF 129
           +A+   CL +A+ T  L+  ++D + GFLF
Sbjct: 416 YAQRFGCLPIAHATGGLIDTVDDGVTGFLF 445


>sp|Q8PDD2|GLGA_XANCP Glycogen synthase OS=Xanthomonas campestris
           pv. campestris GN=glgA PE=3 SV=1
          Length = 474

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 40  FAESEACLGVANKTSSLLHCINDDIFGFLF 129
           +A+   CL +A+ T  L+  ++D + GFLF
Sbjct: 381 YAQRFGCLPIAHATGGLIDTVDDGVTGFLF 410


>sp|Q4UZL8|GLGA_XANC8 Glycogen synthase OS=Xanthomonas campestris
           pv. campestris (strain 8004) GN=glgA PE=3 SV=1
          Length = 474

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 40  FAESEACLGVANKTSSLLHCINDDIFGFLF 129
           +A+   CL +A+ T  L+  ++D + GFLF
Sbjct: 381 YAQRFGCLPIAHATGGLIDTVDDGVTGFLF 410


>sp|Q3BYI1|GLGA_XANC5 Glycogen synthase OS=Xanthomonas campestris
           pv. vesicatoria (strain 85-10) GN=glgA PE=3 SV=2
          Length = 509

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 40  FAESEACLGVANKTSSLLHCINDDIFGFLF 129
           +A+   CL +A+ T  L+  ++D + GFLF
Sbjct: 416 YAQRFGCLPIAHATGGLIDTVDDGVTGFLF 445


>sp|Q8PQA3|GLGA_XANAC Glycogen synthase OS=Xanthomonas axonopodis
           pv. citri GN=glgA PE=3 SV=1
          Length = 474

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 40  FAESEACLGVANKTSSLLHCINDDIFGFLF 129
           +A+   CL +A+ T  L+  ++D + GFLF
Sbjct: 381 YAQRFGCLPIAHATGGLIDTVDDGVTGFLF 410


>sp|Q21SF8|RPOC_RHOFD DNA-directed RNA polymerase subunit beta'
            OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC
            BAA-621 / T118) GN=rpoC PE=3 SV=1
          Length = 1405

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
 Frame = -3

Query: 375  SRRVTYYKVDSTQDV---------DMHLSMGLD*RYASTNVEDAMDKTFHLKNGEVYEKK 223
            S  +  Y VD  QDV         D H+ + +        VE+A D T+   NGE  E+ 
Sbjct: 1224 SEELARYIVDEVQDVYRLQGVKINDKHIEVIVRQMLRRVVVENAGDSTYI--NGEQVERS 1281

Query: 222  EILITN 205
            EIL TN
Sbjct: 1282 EILNTN 1287


>sp|Q894H0|DXS_CLOTE 1-deoxy-D-xylulose-5-phosphate synthase
           OS=Clostridium tetani GN=dxs PE=3 SV=2
          Length = 618

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = +1

Query: 4   GCSKKSKMVTWNFAESEACLGVANK 78
           GCSKKSK VT++ A  +A + +A+K
Sbjct: 307 GCSKKSKGVTYSKAFGKAMVSIASK 331
tr_hit_id Q9VVC7
Definition tr|Q9VVC7|Q9VVC7_DROME CG3764 OS=Drosophila melanogaster
Align length 58
Score (bit) 33.1
E-value 7.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912332|Adiantum capillus-veneris mRNA, clone:
YMU001_000017_H04.
         (392 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9VVC7|Q9VVC7_DROME CG3764 OS=Drosophila melanogaster GN=CG37...    33   7.1  
tr|Q8T0L7|Q8T0L7_DROME GH23617p OS=Drosophila melanogaster GN=CG...    33   7.1  
tr|B4PJZ8|B4PJZ8_DROYA GE22177 OS=Drosophila yakuba GN=GE22177 P...    33   7.1  
tr|B4HK97|B4HK97_DROSE GM24356 OS=Drosophila sechellia GN=GM2435...    33   7.1  
tr|B3NDE7|B3NDE7_DROER GG15838 OS=Drosophila erecta GN=GG15838 P...    33   7.1  
tr|B3M441|B3M441_DROAN GF10491 OS=Drosophila ananassae GN=GF1049...    33   7.1  
tr|Q07YT8|Q07YT8_SHEFN Ribosomal RNA large subunit methyltransfe...    33   9.3  
tr|Q5CQG1|Q5CQG1_CRYPV Large protein with signal peptide OS=Cryp...    33   9.3  

>tr|Q9VVC7|Q9VVC7_DROME CG3764 OS=Drosophila melanogaster
           GN=CG3764-RA PE=2 SV=1
          Length = 1385

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
 Frame = -3

Query: 165 KSPSWISLDTQGKKKAKNVIVDAMKKRACFVGYAQT-------SLTFSKIPSHHLGFL 13
           K+P W+S+ T G K +K V    +K+    + +A T       S   + I +HHLG++
Sbjct: 464 KTPVWLSITTSGSKYSKTVAERFIKELCDLLSFADTKDSNFFISTMLTGILTHHLGWV 521


>tr|Q8T0L7|Q8T0L7_DROME GH23617p OS=Drosophila melanogaster
           GN=CG3764 PE=1 SV=1
          Length = 1385

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
 Frame = -3

Query: 165 KSPSWISLDTQGKKKAKNVIVDAMKKRACFVGYAQT-------SLTFSKIPSHHLGFL 13
           K+P W+S+ T G K +K V    +K+    + +A T       S   + I +HHLG++
Sbjct: 464 KTPVWLSITTSGSKYSKTVAERFIKELCDLLSFADTKDSNFFISTMLTGILTHHLGWV 521


>tr|B4PJZ8|B4PJZ8_DROYA GE22177 OS=Drosophila yakuba GN=GE22177 PE=4
           SV=1
          Length = 1383

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
 Frame = -3

Query: 165 KSPSWISLDTQGKKKAKNVIVDAMKKRACFVGYAQT-------SLTFSKIPSHHLGFL 13
           K+P W+S+ T G K +K V    +K+    + +A T       S   + I +HHLG++
Sbjct: 465 KTPVWLSITTSGSKYSKTVAERFIKELCDLLSFADTKDSNFFISTMLTGILTHHLGWV 522


>tr|B4HK97|B4HK97_DROSE GM24356 OS=Drosophila sechellia GN=GM24356
           PE=4 SV=1
          Length = 1385

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
 Frame = -3

Query: 165 KSPSWISLDTQGKKKAKNVIVDAMKKRACFVGYAQT-------SLTFSKIPSHHLGFL 13
           K+P W+S+ T G K +K V    +K+    + +A T       S   + I +HHLG++
Sbjct: 464 KTPVWLSITTSGSKYSKTVAERFIKELCDLLSFADTKDSNFFISTMLTGILTHHLGWV 521


>tr|B3NDE7|B3NDE7_DROER GG15838 OS=Drosophila erecta GN=GG15838 PE=4
           SV=1
          Length = 1386

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
 Frame = -3

Query: 165 KSPSWISLDTQGKKKAKNVIVDAMKKRACFVGYAQT-------SLTFSKIPSHHLGFL 13
           K+P W+S+ T G K +K V    +K+    + +A T       S   + I +HHLG++
Sbjct: 465 KTPVWLSITTSGSKYSKTVAERFIKELCDLLSFADTKDSNFFISTMLTGILTHHLGWV 522


>tr|B3M441|B3M441_DROAN GF10491 OS=Drosophila ananassae GN=GF10491
           PE=4 SV=1
          Length = 1376

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
 Frame = -3

Query: 165 KSPSWISLDTQGKKKAKNVIVDAMKKRACFVGYAQT-------SLTFSKIPSHHLGFL 13
           K+P W+S+ T G K +K V    +K+    + +A T       S   + I +HHLG++
Sbjct: 471 KTPVWLSITTSGSKYSKTVAERFIKELCDLLSFADTKDSNFFISTMLTGILTHHLGWV 528


>tr|Q07YT8|Q07YT8_SHEFN Ribosomal RNA large subunit
           methyltransferase A, putative OS=Shewanella
           frigidimarina (strain NCIMB 400) GN=Sfri_2987 PE=4 SV=1
          Length = 280

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 21/54 (38%), Positives = 26/54 (48%)
 Frame = -1

Query: 179 FSKIPSHHLGFLWTPKGKRKPKMSSLMQ*RRELVLLATPKQASLSAKFQVTILD 18
           F K P+ +   L   KGK KPK+ S  Q R    LL T   A L  + Q  +LD
Sbjct: 31  FDKHPNGYWPLLSNVKGKSKPKVESRQQMRGRHFLLETGLFAPLIKQLQAVLLD 84


>tr|Q5CQG1|Q5CQG1_CRYPV Large protein with signal peptide
           OS=Cryptosporidium parvum Iowa II GN=cgd4_850 PE=4 SV=1
          Length = 2091

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 20/60 (33%), Positives = 32/60 (53%)
 Frame = -2

Query: 244 WRSL*EKRDFDHQLGNFKVASLSAKFQVTILDFFGHPREKESQKCHR*CNEEESLFCWLR 65
           WRSL ++   D  +GN ++  LS  F + + DF  +P+     K  R CN  ++LF  L+
Sbjct: 293 WRSLLQQESRDQSIGNRRLTILSQSFPIELSDFTYNPK-----KLLRLCN--QTLFSLLK 345