BP912334 |
Clone id |
YMU001_000017_H06 |
Library |
YMU01 |
Length |
455 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000017_H06. |
Accession |
BP912334 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL1480Contig1 |
Sequence |
CGCGGCCGCAGGAATTTTTGTCTTGACTGGGAAAATCCTGACTGTCAAATAGAAACTGAT TGAACTGTTGACCCACCCTATCAAACTGCTAATTTTGCCACAAGGACATTGATAGCTTCC ATCGAGTATGATATTTTCTCCATTGGCCACTACCCCAGCCATGTCCTTGTTGAGAGCACA CTCAATATGACAAGATAATCTGCAATCCACTTCCACATTGAGTGGCTCTGGTGTGCAGAA TATCCAGAGACTTGGATCTTTGTTATCATCAAAATTCTTGCAAATACAGCAGGAACATCG CTGACAGAAACTTGCACCGTGCAGTAGATGAGCTTTGCAGGCTGTGTTTCTGCACACCCA TGAAAGCTGTGTCTTCTGGGTGCCTACATCCACAGGTGTAGGAACAGCTGATGGAATTCG AGCAGGCCTCCCTGCTTTTCGTTGCCGTCTCAATA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9FIE3 |
Definition |
sp|Q9FIE3|VIN3_ARATH Protein VERNALIZATION INSENSITIVE 3 OS=Arabidopsis thaliana |
Align length |
94 |
Score (bit) |
91.7 |
E-value |
1.0e-18 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7PET2 |
Definition |
tr|A7PET2|A7PET2_VITVI Chromosome chr11 scaffold_13, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
126 |
Score (bit) |
127.0 |
E-value |
4.0e-28 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP912334|Adiantum capillus-veneris mRNA, clone: YMU001_000017_H06. (436 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7PET2|A7PET2_VITVI Chromosome chr11 scaffold_13, whole genom... 127 4e-28 tr|A5BJM1|A5BJM1_VITVI Putative uncharacterized protein OS=Vitis... 127 4e-28 tr|A7Q6D8|A7Q6D8_VITVI Chromosome chr11 scaffold_56, whole genom... 124 2e-27 tr|A7P5H9|A7P5H9_VITVI Chromosome chr4 scaffold_6, whole genome ... 124 3e-27 tr|Q9LHF5|Q9LHF5_ARATH Emb|CAB52464.1 (VIN3-like 1 protein) OS=A... 120 3e-26 tr|Q2QPD5|Q2QPD5_ORYSJ cDNA clone:J013158L10, full insert sequen... 115 1e-24 tr|B8BM95|B8BM95_ORYSI Putative uncharacterized protein OS=Oryza... 115 1e-24 tr|A8BCW8|A8BCW8_WHEAT Vernalization insensitive 3 OS=Triticum a... 115 1e-24 tr|A3CI12|A3CI12_ORYSJ Putative uncharacterized protein OS=Oryza... 115 1e-24 tr|A0SQ43|A0SQ43_TRIMO VIL1 protein OS=Triticum monococcum subsp... 115 1e-24 tr|A0SQ40|A0SQ40_TRIMO VIL1 protein OS=Triticum monococcum subsp... 115 1e-24 tr|Q67IU4|Q67IU4_ORYSJ Os02g0152500 protein OS=Oryza sativa subs... 114 2e-24 tr|A2X0Z8|A2X0Z8_ORYSI Putative uncharacterized protein OS=Oryza... 114 2e-24 tr|A0SQ41|A0SQ41_TRIMO VIL2 protein OS=Triticum monococcum subsp... 114 3e-24 tr|A0SQ38|A0SQ38_TRIMO VIL2 protein OS=Triticum monococcum subsp... 114 3e-24 tr|A0SQ42|A0SQ42_TRIMO VIL3 protein OS=Triticum monococcum subsp... 113 4e-24 tr|A0SQ39|A0SQ39_TRIMO VIL3 protein OS=Triticum monococcum subsp... 113 4e-24 tr|Q6AUH8|Q6AUH8_ORYSJ Os05g0145400 protein OS=Oryza sativa subs... 113 5e-24 tr|A2Y0C2|A2Y0C2_ORYSI Putative uncharacterized protein OS=Oryza... 113 5e-24 tr|B8A1M9|B8A1M9_MAIZE Putative uncharacterized protein OS=Zea m... 107 2e-22 tr|A7NUL4|A7NUL4_VITVI Chromosome chr18 scaffold_1, whole genome... 106 7e-22 tr|B8BBY4|B8BBY4_ORYSI Putative uncharacterized protein OS=Oryza... 105 1e-21 tr|Q6Z2D6|Q6Z2D6_ORYSJ Os08g0220600 protein OS=Oryza sativa subs... 104 2e-21 tr|A3BQR4|A3BQR4_ORYSJ Putative uncharacterized protein OS=Oryza... 104 2e-21 tr|Q9SUM4|Q9SUM4_ARATH Putative uncharacterized protein AT4g3020... 101 2e-20 tr|Q8GUH6|Q8GUH6_ARATH Putative uncharacterized protein At4g3020... 101 2e-20 tr|Q3E9U4|Q3E9U4_ARATH Uncharacterized protein At4g30200.3 OS=Ar... 101 2e-20 tr|B6SH64|B6SH64_MAIZE Putative uncharacterized protein OS=Zea m... 100 3e-20 tr|Q5BPT4|Q5BPT4_ARATH Putative uncharacterized protein OS=Arabi... 95 2e-18 tr|A1DW35|A1DW35_ARATH VIN3-like 3 protein OS=Arabidopsis thalia... 95 2e-18
>tr|A7PET2|A7PET2_VITVI Chromosome chr11 scaffold_13, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00016778001 PE=4 SV=1 Length = 619
Score = 127 bits (318), Expect = 4e-28 Identities = 63/126 (50%), Positives = 80/126 (63%), Gaps = 1/126 (0%) Frame = -3
Query: 431 RRQRKAGRPARIPSAVPTPVDVGTQKTQLSWVCRNTACKAHLLHGASFCQRCSCCICKNF 252 + RK P R+P A D SWVC+N+AC+A L +FC+RCSCCIC F Sbjct: 33 KHHRKGENPIRLPLATEQSPDFVCSN---SWVCKNSACRAVLSIEDTFCKRCSCCICHRF 89
Query: 251 DDNKDPSLWIFCTPEPLNVEVDCRLSCHIECALNKDMAGVVANGENIILDGSYQC-PCGK 75 DDNKDPSLW+ CT E + E C LSCHI+CAL ++ GVV G+ + LDGSY C CGK Sbjct: 90 DDNKDPSLWLVCTSESSH-EDSCGLSCHIDCALLRNKVGVVDLGQLMQLDGSYCCATCGK 148
Query: 74 ISSLIG 57 +S ++G Sbjct: 149 VSGILG 154
>tr|A5BJM1|A5BJM1_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003834 PE=4 SV=1 Length = 707
Score = 127 bits (318), Expect = 4e-28 Identities = 63/126 (50%), Positives = 80/126 (63%), Gaps = 1/126 (0%) Frame = -3
Query: 431 RRQRKAGRPARIPSAVPTPVDVGTQKTQLSWVCRNTACKAHLLHGASFCQRCSCCICKNF 252 + RK P R+P A D SWVC+N+AC+A L +FC+RCSCCIC F Sbjct: 103 KHHRKGENPIRLPLATEQSPDFVCSN---SWVCKNSACRAVLSIEDTFCKRCSCCICHRF 159
Query: 251 DDNKDPSLWIFCTPEPLNVEVDCRLSCHIECALNKDMAGVVANGENIILDGSYQC-PCGK 75 DDNKDPSLW+ CT E + E C LSCHI+CAL ++ GVV G+ + LDGSY C CGK Sbjct: 160 DDNKDPSLWLVCTSESSH-EDSCGLSCHIDCALLRNKVGVVDLGQLMQLDGSYCCATCGK 218
Query: 74 ISSLIG 57 +S ++G Sbjct: 219 VSGILG 224
>tr|A7Q6D8|A7Q6D8_VITVI Chromosome chr11 scaffold_56, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00031355001 PE=4 SV=1 Length = 639
Score = 124 bits (312), Expect = 2e-27 Identities = 55/126 (43%), Positives = 80/126 (63%), Gaps = 2/126 (1%) Frame = -3
Query: 428 RQRKAGRPARIPSAVPT-PVDVGTQKTQLSWVCRNTACKAHLLHGASFCQRCSCCICKNF 252 RQRKA P+R+P A + G + C+N AC+A+L FC+RCSCCIC + Sbjct: 66 RQRKADHPSRLPVAANNHSISNGDGDLGNAIYCKNLACRANLSREYEFCKRCSCCICHQY 125
Query: 251 DDNKDPSLWIFCTPEPLNVEVDCRLSCHIECALNKDMAGVVANGENIILDGSYQC-PCGK 75 DDNKDPSLW+ C+ +P V C +SCH+ECA + +G+ +G ++ LDGS+ C CGK Sbjct: 126 DDNKDPSLWLTCSSDPPFQGVSCGMSCHLECAFKHEKSGIAKDGRHVRLDGSFYCVSCGK 185
Query: 74 ISSLIG 57 ++ ++G Sbjct: 186 VNDMLG 191
>tr|A7P5H9|A7P5H9_VITVI Chromosome chr4 scaffold_6, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00032539001 PE=4 SV=1 Length = 631
Score = 124 bits (310), Expect = 3e-27 Identities = 60/126 (47%), Positives = 82/126 (65%), Gaps = 1/126 (0%) Frame = -3
Query: 431 RRQRKAGRPARIPSAVPTPVDVGTQKTQLSWVCRNTACKAHLLHGASFCQRCSCCICKNF 252 ++ RK G P R+PSA D + T+ +C+N+AC+A L FC+RCSCCIC +F Sbjct: 30 KQPRKGGNPVRLPSAAGLTQDEESSNTR---ICKNSACRAVLSLDDIFCKRCSCCICHSF 86
Query: 251 DDNKDPSLWIFCTPEPLNVEVDCRLSCHIECALNKDMAGVVANGENIILDGSYQC-PCGK 75 DDNKDPSLW+ CT E + C LSCHIECA+ + GVV G+ + LDG+Y C CGK Sbjct: 87 DDNKDPSLWLVCTSE-FDKGDTCGLSCHIECAILRQKVGVVDLGQLMQLDGTYCCASCGK 145
Query: 74 ISSLIG 57 ++ ++G Sbjct: 146 VTEILG 151
>tr|Q9LHF5|Q9LHF5_ARATH Emb|CAB52464.1 (VIN3-like 1 protein) OS=Arabidopsis thaliana GN=VIL1 PE=2 SV=1 Length = 602
Score = 120 bits (302), Expect = 3e-26 Identities = 53/107 (49%), Positives = 72/107 (67%), Gaps = 1/107 (0%) Frame = -3
Query: 374 VDVGTQKTQLSWVCRNTACKAHLLHGASFCQRCSCCICKNFDDNKDPSLWIFCTPEPLNV 195 VD G + SW+C+N +C+A++ SFC+RCSCC+C NFD+NKDPSLW+ C PE + Sbjct: 36 VDGGGGCLRSSWICKNASCRANVPKEDSFCKRCSCCVCHNFDENKDPSLWLVCEPEKSDD 95
Query: 194 EVDCRLSCHIECALNKDMAGVVANGENIILDGSYQC-PCGKISSLIG 57 C LSCHIECA + GV+A G + LDG + C CGK+S ++G Sbjct: 96 VEFCGLSCHIECAFREVKVGVIALGNLMKLDGCFCCYSCGKVSQILG 142
>tr|Q2QPD5|Q2QPD5_ORYSJ cDNA clone:J013158L10, full insert sequence OS=Oryza sativa subsp. japonica GN=LOC_Os12g34850 PE=2 SV=1 Length = 707
Score = 115 bits (288), Expect = 1e-24 Identities = 56/125 (44%), Positives = 76/125 (60%), Gaps = 7/125 (5%) Frame = -3
Query: 407 PARIPSAVPTPVDVGTQKT------QLSWVCRNTACKAHLLHGASFCQRCSCCICKNFDD 246 P ++P PV + +T +W+C+N ACKA L +FC+RCSCCIC FDD Sbjct: 111 PRKLPRKGDYPVQLRRNETFQDTKPPSTWICKNAACKAVLTADNTFCKRCSCCICHLFDD 170
Query: 245 NKDPSLWIFCTPEPLNVEVDCRLSCHIECALNKDMAGVVANGENIILDGSYQC-PCGKIS 69 NKDPSLW+ C+ E + + C SCHIECAL G V G++I LDG+Y C CGK+ Sbjct: 171 NKDPSLWLVCSSETGDRDC-CESSCHIECALQHQKVGCVDLGQSIQLDGNYCCAACGKVI 229
Query: 68 SLIGW 54 ++G+ Sbjct: 230 GILGF 234
>tr|B8BM95|B8BM95_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_38576 PE=4 SV=1 Length = 707
Score = 115 bits (288), Expect = 1e-24 Identities = 56/125 (44%), Positives = 76/125 (60%), Gaps = 7/125 (5%) Frame = -3
Query: 407 PARIPSAVPTPVDVGTQKT------QLSWVCRNTACKAHLLHGASFCQRCSCCICKNFDD 246 P ++P PV + +T +W+C+N ACKA L +FC+RCSCCIC FDD Sbjct: 111 PRKLPRKGDYPVQLRRNETFQDTKPPSTWICKNAACKAVLTADNTFCKRCSCCICHLFDD 170
Query: 245 NKDPSLWIFCTPEPLNVEVDCRLSCHIECALNKDMAGVVANGENIILDGSYQC-PCGKIS 69 NKDPSLW+ C+ E + + C SCHIECAL G V G++I LDG+Y C CGK+ Sbjct: 171 NKDPSLWLVCSSETGDRDC-CESSCHIECALQHQKVGCVDLGQSIQLDGNYCCAACGKVI 229
Query: 68 SLIGW 54 ++G+ Sbjct: 230 GILGF 234
>tr|A8BCW8|A8BCW8_WHEAT Vernalization insensitive 3 OS=Triticum aestivum PE=2 SV=1 Length = 697
Score = 115 bits (288), Expect = 1e-24 Identities = 54/124 (43%), Positives = 78/124 (62%), Gaps = 1/124 (0%) Frame = -3
Query: 422 RKAGRPARIPSAVPTPVDVGTQKTQLSWVCRNTACKAHLLHGASFCQRCSCCICKNFDDN 243 RK G P ++ + +K +W+C+N ACKA L +FC+RCSCCIC FDDN Sbjct: 114 RKGGHPIQLRESEMFQ----DKKPPSTWICKNAACKAVLTSENTFCKRCSCCICHLFDDN 169
Query: 242 KDPSLWIFCTPEPLNVEVDCRLSCHIECALNKDMAGVVANGENIILDGSYQC-PCGKISS 66 KDPSLW+ C+ E + + C SCH+ECAL + AG + G+++ LDG+Y C CGK+ Sbjct: 170 KDPSLWLVCSSETGDTDC-CESSCHVECALQRRKAGRIDLGQSMHLDGNYCCAACGKVIG 228
Query: 65 LIGW 54 ++G+ Sbjct: 229 ILGF 232
>tr|A3CI12|A3CI12_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_034934 PE=4 SV=1 Length = 887
Score = 115 bits (288), Expect = 1e-24 Identities = 56/125 (44%), Positives = 76/125 (60%), Gaps = 7/125 (5%) Frame = -3
Query: 407 PARIPSAVPTPVDVGTQKT------QLSWVCRNTACKAHLLHGASFCQRCSCCICKNFDD 246 P ++P PV + +T +W+C+N ACKA L +FC+RCSCCIC FDD Sbjct: 302 PRKLPRKGDYPVQLRRNETFQDTKPPSTWICKNAACKAVLTADNTFCKRCSCCICHLFDD 361
Query: 245 NKDPSLWIFCTPEPLNVEVDCRLSCHIECALNKDMAGVVANGENIILDGSYQC-PCGKIS 69 NKDPSLW+ C+ E + + C SCHIECAL G V G++I LDG+Y C CGK+ Sbjct: 362 NKDPSLWLVCSSETGDRDC-CESSCHIECALQHQKVGCVDLGQSIQLDGNYCCAACGKVI 420
Query: 68 SLIGW 54 ++G+ Sbjct: 421 GILGF 425
>tr|A0SQ43|A0SQ43_TRIMO VIL1 protein OS=Triticum monococcum subsp. monococcum GN=VIL1 PE=4 SV=1 Length = 697
Score = 115 bits (287), Expect = 1e-24 Identities = 50/103 (48%), Positives = 71/103 (68%), Gaps = 1/103 (0%) Frame = -3
Query: 359 QKTQLSWVCRNTACKAHLLHGASFCQRCSCCICKNFDDNKDPSLWIFCTPEPLNVEVDCR 180 +K +W+C+N ACKA L +FC+RCSCCIC FDDNKDPSLW+ C+ E + + C Sbjct: 131 KKPPSTWICKNAACKAVLTSENTFCKRCSCCICHLFDDNKDPSLWLVCSSETGDTDC-CE 189
Query: 179 LSCHIECALNKDMAGVVANGENIILDGSYQC-PCGKISSLIGW 54 SCH+ECAL + AG + G+++ LDG+Y C CGK+ ++G+ Sbjct: 190 SSCHVECALQRRKAGRIDLGQSMHLDGNYCCAACGKVIGILGF 232
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